Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002243

Physical Location & Seq

Genomic Coordinates Forward (+)

14473229 .. 14475059

Gene Structure 1831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATCAGAGCAAGTCCATCTCCACTTCTTTATTTATGCTGCTTCTTCTTCTCCTTCAAATTTTGCACTACTCAACACCCATTACAGCTCAAGAAGTTGAAGAAGAAAGAGAGTTTGATTATCTGAAAGACAGTGAGAAGGGACCAAAGTATTGGGGAGAGCTTAGGGAAGAATGGGCAGCATGTAAACATGGGACACTGCAATCTCCGGTAGATTTGCTGAGTGAGAATGTGCAAGTACGCCTAAACAAAGGGGAGGTGAGACTCAAGTACAAGCCTGCAAATGCAACAATCAGAAATAGAGGCCATGACATTTCGGTCCAGTGGAATCTAGGTGATGCTGGATCCGTAGAGATTAATGGCACAGATTACTTGCTACAACAATGCCACTGGCACTCACCATCCGAGCATACAATTGATGGTATAAGATTTGACATGGAGCTTCATATGGTACACCTAATCCCTGATGCAAATGTCGAAAACAACATAGTTGTGGTTACATACCTCTACAAACTTGGCAAGCCTGATAAGTTTCTCTCGGAGGTAAGCAAGGATATCCATGCCATGATTGATGAAGAGGAAGAGAGACACAGAGGGGTGGTTGATCCAAGAGATGTGAAGAAGGGTGGCAAAAAATTTTACAAGTACATAGGCTCACTCACTGTACCTCCTTGCACTGAAGGAGTAACTTGGATCATCCACAAAAAGTTAACTACTGTTTCAAGAGAGCAAATGGAGTTGCTTCGAGAAGCCGTTCATGACTTCGCAGAACAGAATGCAAGACCATTGCAAGCTCTCAATCGCCGAGATGTGCACTTCCACGGCCCTGAGTCTCACATTCGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

282

Amino Acids

32.53

Weight (kDa)

5.93

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	48 - 272	1.6e-39	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12020 AT3G12020 AT3G12020 AT3G12020 AT5G06670 AT5G06670 AT5G06670 AT5G06670
fragaria_vesca	FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780
malus_domestica	MD12G1054300.v1.1 MD14G1053100.v1.1
prunus_persica	Prupe.7G082400_v2.0.a1
pyrus_communis	pycom12g04730 pycom14g04410
rosa_chinensis	RchiOBHm_Chr3g0479141
rosa_laevigata	RLG00000023604
rosa_multiflora	Rmu_co8049936.1_g000001 Rmu_co8383491.1_g000001 Rmu_sc0002555.1_g000005
rosa_roxburghii	Rroxscaffold_6G00402700
rosa_rugosa	Rorug03G0171300 Rorug03G0171400
rosa_samantha	Rh3AG222600 Rh3BG255100 Rh3CG250700 Rh3DG247100 Rh6AG090700 Rh6BG153100 Rh6CG078500 Rh6DG074300 Rh6DG137500
rosa_wichuraiana	Rw0G001170 Rw1G014040 Rw3G019950 Rw6G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AclWI	GGATC	5 cut(s)	12, 339, 352, 599, 701
AcsI	RAATTY	2 cut(s)	60, 635
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	5 cut(s)	240, 272, 453, 647, 666
AgsI	TTSAA	3 cut(s)	59, 101, 723
AluBI	AGCT	4 cut(s)	89, 163, 442, 794
AluI	AGCT	4 cut(s)	89, 163, 442, 794
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	3 cut(s)	256, 580, 837
Alw44I	GTGCAC	1 cut(s)	812
AlwI	GGATC	5 cut(s)	12, 339, 352, 599, 701
AoxI	GGCC	2 cut(s)	304, 823
ApaLI	GTGCAC	1 cut(s)	812
ApeKI	GCWGC	2 cut(s)	40, 179
ApoI	RAATTY	2 cut(s)	60, 635
AseI	ATTAAT	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	753
AspS9I	GGNCC	3 cut(s)	143, 319, 824
AsuHPI	GGTGA	3 cut(s)	271, 347, 390
AvaII	GGWCC	2 cut(s)	143, 319
BaeGI	GKGCMC	1 cut(s)	816
BamHI	GGATCC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	2 cut(s)	27, 191
BccI	CCATC	3 cut(s)	26, 409, 413
BceAI	ACGGC	2 cut(s)	737, 838
BcoDI	GTCTC	3 cut(s)	256, 580, 837
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	2 cut(s)	41, 180
BlsI	GCNGC	2 cut(s)	42, 181
Bme18I	GGWCC	2 cut(s)	143, 319
BmgT120I	GGNCC	3 cut(s)	143, 319, 824
BmiI	GGNNCC	2 cut(s)	144, 346
BmsI	GCATC	2 cut(s)	328, 457
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	75, 251
BsaJI	CCNNGG	1 cut(s)	820
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	652, 682
Bse1I	ACTGG	2 cut(s)	322, 395
Bse3DI	GCAATG	1 cut(s)	785
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	2 cut(s)	401, 696
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	2 cut(s)	212, 819
BseNI	ACTGG	2 cut(s)	322, 395
BseSI	GKGCMC	1 cut(s)	816
BseXI	GCAGC	2 cut(s)	27, 191
BshFI	GGCC	2 cut(s)	306, 825
BsiHKAI	GWGCWC	1 cut(s)	816
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	156, 208
BsmAI	GTCTC	3 cut(s)	256, 580, 837
BsmFI	GGGAC	2 cut(s)	156, 208
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	306, 825
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp143I	GATC	4 cut(s)	4, 344, 604, 693
BspANI	GGCC	2 cut(s)	306, 825
BspCNI	CTCAG	2 cut(s)	213, 820
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	2 cut(s)	144, 346
BspPI	GGATC	5 cut(s)	12, 339, 352, 599, 701
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	2 cut(s)	322, 395
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	4 cut(s)	4, 344, 604, 693
Bst4CI	ACNGT	3 cut(s)	134, 664, 718
Bst6I	CTCTTC	2 cut(s)	570, 576
BstC8I	GCNNGC	3 cut(s)	279, 521, 792
BstDEI	CTNAG	3 cut(s)	164, 221, 828
BstDSI	CCRYGG	1 cut(s)	820
BstF5I	GGATG	2 cut(s)	401, 696
BstKTI	GATC	4 cut(s)	7, 347, 607, 696
BstMAI	GTCTC	3 cut(s)	256, 580, 837
BstMBI	GATC	4 cut(s)	4, 344, 604, 693
BstNSI	RCATGY	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	27, 191
BstX2I	RGATCY	1 cut(s)	344
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	306, 825
BtgI	CCRYGG	1 cut(s)	820
BtsCI	GGATG	2 cut(s)	401, 696
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	6 cut(s)	139, 197, 329, 388, 660, 675
Cac8I	GCNNGC	3 cut(s)	279, 521, 792
CciI	TCATGA	1 cut(s)	757
Cfr13I	GGNCC	3 cut(s)	143, 319, 824
Csp6I	GTAC	5 cut(s)	239, 271, 452, 646, 665
CviAII	CATG	7 cut(s)	183, 191, 308, 436, 560, 565, 758
CviQI	GTAC	5 cut(s)	239, 271, 452, 646, 665
DdeI	CTNAG	3 cut(s)	164, 221, 828
DpnI	GATC	4 cut(s)	6, 346, 606, 695
DpnII	GATC	4 cut(s)	4, 344, 604, 693
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	570, 576
EarI	CTCTTC	2 cut(s)	570, 576
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	2 cut(s)	143, 319
Eco57I	CTGAAG	1 cut(s)	699
EcoRV	GATATC	1 cut(s)	556
FaeI	CATG	7 cut(s)	186, 194, 311, 439, 563, 568, 761
FaqI	GGGAC	2 cut(s)	156, 208
FatI	CATG	7 cut(s)	182, 190, 307, 435, 559, 564, 757
FauNDI	CATATG	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	41, 180
FokI	GGATG	2 cut(s)	388, 683
Fsp4HI	GCNGC	2 cut(s)	41, 180
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	2 cut(s)	41, 180
HaeIII	GGCC	2 cut(s)	306, 825
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	7 cut(s)	186, 194, 311, 439, 563, 568, 761
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HinfI	GANTC	3 cut(s)	264, 328, 830
HpaI	GTTAAC	1 cut(s)	711
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	3 cut(s)	271, 347, 390
Hpy166II	GTNNAC	4 cut(s)	188, 454, 711, 814
Hpy188I	TCNGA	5 cut(s)	9, 126, 296, 406, 541
Hpy188III	TCNNGA	5 cut(s)	92, 723, 746, 758, 842
Hpy8I	GTNNAC	4 cut(s)	188, 454, 711, 814
HpyAV	CCTTC	4 cut(s)	65, 133, 616, 674
HpyCH4III	ACNGT	3 cut(s)	134, 664, 718
HpyF3I	CTNAG	3 cut(s)	164, 221, 828
Hsp92II	CATG	7 cut(s)	186, 194, 311, 439, 563, 568, 761
KspAI	GTTAAC	1 cut(s)	711
Kzo9I	GATC	4 cut(s)	4, 344, 604, 693
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	8 cut(s)	222, 291, 327, 335, 376, 477, 537, 840
Lsp1109I	GCAGC	2 cut(s)	27, 191
LweI	GCATC	2 cut(s)	328, 457
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	2 cut(s)	496, 685
MalI	GATC	4 cut(s)	6, 346, 606, 695
MboI	GATC	4 cut(s)	4, 344, 604, 693
MboII	GAAGA	8 cut(s)	38, 41, 113, 116, 182, 587, 593, 631
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	816
MluCI	AATT	3 cut(s)	60, 414, 635
MlyI	GAGTC	2 cut(s)	258, 839
MnlI	CCTC	7 cut(s)	250, 296, 515, 535, 571, 587, 678
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	3 cut(s)	357, 710, 847
MslI	CAYNNNNRTG	1 cut(s)	491
MspI	CCGG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	781
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	4 cut(s)	4, 344, 604, 693
NlaIII	CATG	7 cut(s)	186, 194, 311, 439, 563, 568, 761
NlaIV	GGNNCC	2 cut(s)	144, 346
NmeAIII	GCCGAG	1 cut(s)	830
NspI	RCATGY	1 cut(s)	186
PagI	TCATGA	1 cut(s)	757
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	42, 181
PleI	GAGTC	2 cut(s)	258, 838
PpsI	GAGTC	2 cut(s)	258, 838
PshBI	ATTAAT	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	144, 346
PspPI	GGNCC	3 cut(s)	143, 319, 824
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	5 cut(s)	240, 272, 453, 647, 666
RsaNI	GTAC	5 cut(s)	239, 271, 452, 646, 665
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	357, 710, 847
SatI	GCNGC	2 cut(s)	41, 180
Sau3AI	GATC	4 cut(s)	4, 344, 604, 693
Sau96I	GGNCC	3 cut(s)	143, 319, 824
SchI	GAGTC	2 cut(s)	258, 839
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	2 cut(s)	328, 457
SinI	GGWCC	2 cut(s)	143, 319
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	90, 266
SmoI	CTYRAG	2 cut(s)	90, 266
Sse9I	AATT	3 cut(s)	60, 414, 635
SspMI	CTAG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	134, 664, 718
TaqI	TCGA	2 cut(s)	477, 745
TaqII	GACCGA	1 cut(s)	307
TasI	AATT	3 cut(s)	60, 414, 635
TatI	WGTACW	2 cut(s)	270, 645
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	3 cut(s)	357, 710, 847
Tru9I	TTAA	3 cut(s)	357, 710, 847
TscAI	CASTG	6 cut(s)	139, 204, 329, 395, 667, 682
TseI	GCWGC	2 cut(s)	40, 179
TspDTI	ATGAA	3 cut(s)	434, 588, 746
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	6 cut(s)	139, 204, 329, 395, 667, 682
VneI	GTGCAC	1 cut(s)	812
VpaK11BI	GGWCC	2 cut(s)	143, 319
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	2 cut(s)	60, 635
XceI	RCATGY	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.