Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383491.1

Orthogroup ID

OG0002243

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1179

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383491.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgattgaaagtagtgcccatggggatgaatatgatggagtgatcttctctcaacttaacttgattgatctagctggatcggagagctctaaaactgaaacaactggactaagaagaaaggaaggatcttacattaacaagagccttttaactcttggaactgtaattgggaagctgagtgagggaaaggcatcccatgttccatatcgagattctaagctcacccgccttttacaatcttcgctaagtgggcatggacatgtttcgctcatttgcacggttactcctgcatcaagtagcatggaggaaacccataatacattgaagtttgcaagcagagcaaagcgagtagagatctacgcatcacgtaataaggtgcgctacattttactgtatgtacaaaatttcaagtcaagactcagcattaaacac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031347 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin zf-C3HC4_3

Protein Analysis

144

Amino Acids

15.94

Weight (kDa)

9.64

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12020 AT3G12020 AT3G12020 AT3G12020 AT5G06670 AT5G06670 AT5G06670 AT5G06670
fragaria_vesca	FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780
malus_domestica	MD12G1054300.v1.1 MD14G1053100.v1.1
prunus_persica	Prupe.7G082400_v2.0.a1
pyrus_communis	pycom12g04730 pycom14g04410
rosa_chinensis	RchiOBHm_Chr3g0479141
rosa_laevigata	RLG00000023604
rosa_multiflora	Rmu_co8049936.1_g000001 Rmu_co8383491.1_g000001 Rmu_sc0002555.1_g000005
rosa_roxburghii	Rroxscaffold_6G00402700
rosa_rugosa	Rorug03G0171300 Rorug03G0171400
rosa_samantha	Rh3AG222600 Rh3BG255100 Rh3CG250700 Rh3DG247100 Rh6AG090700 Rh6BG153100 Rh6CG078500 Rh6DG074300 Rh6DG137500
rosa_wichuraiana	Rw0G001170 Rw1G014040 Rw3G019950 Rw6G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	2 cut(s)	85, 133
AcsI	RAATTY	1 cut(s)	403
AfaI	GTAC	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	8, 325, 409
AluBI	AGCT	4 cut(s)	74, 87, 175, 220
AluI	AGCT	4 cut(s)	74, 87, 175, 220
Alw21I	GWGCWC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	85, 133
ApoI	RAATTY	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	89
BccI	CCATC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	71
BglII	AGATCT	1 cut(s)	354
BmsI	GCATC	3 cut(s)	200, 299, 371
BsaAI	YACGTR	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	2 cut(s)	31, 191
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	19, 89
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	42, 67, 77, 125, 354
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	1 cut(s)	226
BspCNI	CTCAG	2 cut(s)	168, 432
BspPI	GGATC	2 cut(s)	85, 133
BsrGI	TGTACA	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	5 cut(s)	42, 67, 77, 125, 354
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	3 cut(s)	163, 280, 393
BstAUI	TGTACA	1 cut(s)	397
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	5 cut(s)	110, 176, 216, 245, 419
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	31, 191
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	5 cut(s)	45, 70, 80, 128, 357
BstMBI	GATC	5 cut(s)	42, 67, 77, 125, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 338
BstNSI	RCATGY	1 cut(s)	263
BstSLI	GKGCMC	1 cut(s)	19
BstX2I	RGATCY	2 cut(s)	125, 354
BstYI	RGATCY	2 cut(s)	125, 354
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	31, 191
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	5 cut(s)	20, 197, 254, 260, 301
CviJI	RGCY	5 cut(s)	74, 87, 144, 175, 220
CviKI_1	RGCY	5 cut(s)	74, 87, 144, 175, 220
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	5 cut(s)	110, 176, 216, 245, 419
DpnI	GATC	5 cut(s)	44, 69, 79, 127, 356
DpnII	GATC	5 cut(s)	42, 67, 77, 125, 354
Ecl136II	GAGCTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	5 cut(s)	23, 200, 257, 263, 304
FaiI	YATR	9 cut(s)	21, 33, 198, 205, 255, 261, 302, 315, 396
FatI	CATG	5 cut(s)	19, 196, 253, 259, 300
FauI	CCCGC	1 cut(s)	233
FokI	GGATG	2 cut(s)	38, 178
FriOI	GRGCYC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	5 cut(s)	23, 200, 257, 263, 304
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	212, 417
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	209, 414
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	3 cut(s)	163, 280, 393
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	276, 290, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 338
HpyF3I	CTNAG	5 cut(s)	110, 176, 216, 245, 419
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	23, 200, 257, 263, 304
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	42, 67, 77, 125, 354
LpnPI	CCDG	3 cut(s)	60, 90, 300
LweI	GCATC	3 cut(s)	200, 299, 371
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	5 cut(s)	44, 69, 79, 127, 356
MboI	GATC	5 cut(s)	42, 67, 77, 125, 354
MboII	GAAGA	3 cut(s)	37, 126, 231
MflI	RGATCY	2 cut(s)	125, 354
MhlI	GDGCHC	2 cut(s)	19, 89
MluCI	AATT	2 cut(s)	165, 403
MlyI	GAGTC	1 cut(s)	411
MnlI	CCTC	2 cut(s)	175, 298
MseI	TTAA	4 cut(s)	57, 135, 149, 426
MslI	CAYNNNNRTG	2 cut(s)	24, 258
MwoI	GCNNNNNNNGC	2 cut(s)	250, 338
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	5 cut(s)	42, 67, 77, 125, 354
NlaIII	CATG	5 cut(s)	23, 200, 257, 263, 304
NspI	RCATGY	1 cut(s)	263
PciI	ACATGT	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
Ppu21I	YACGTR	1 cut(s)	368
PscI	ACATGT	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	125, 354
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	24, 258
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	57, 135, 149, 426
Sau3AI	GATC	5 cut(s)	42, 67, 77, 125, 354
SchI	GAGTC	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	19, 89
SetI	ASST	6 cut(s)	76, 89, 177, 222, 370, 378
SfaNI	GCATC	3 cut(s)	200, 299, 371
SmiMI	CAYNNNNRTG	2 cut(s)	24, 258
Sse9I	AATT	2 cut(s)	165, 403
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	163, 280, 393
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	165, 403
TatI	WGTACW	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	4 cut(s)	57, 135, 149, 426
Tru9I	TTAA	4 cut(s)	57, 135, 149, 426
TspDTI	ATGAA	1 cut(s)	42
XapI	RAATTY	1 cut(s)	403
XceI	RCATGY	1 cut(s)	263
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.