Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002243

Physical Location & Seq

Genomic Coordinates Forward (+)

8379081 .. 8386189

Gene Structure 7109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGATATTGGGTGTTGTTCGATTTTTATCCCTCTGTTGCTTTCATGATATGTTGATTCACTTTGTGATCAAGTCTGAATTGCTGTCAACAACAGAGCACAGGCATGTTGGATCAACAAATTTCAATTTACTCAGTAGCAGGAGCCATACTATATTTACACTAACAATCGAGAGTAGCCCGTGTGGGGAAAATAGTGAAGGTGAAGCTGTAAATCTGTCGCAATTGAACCTCATTGATCTGGCTGGTTCTGAGAGCTCAAAAGCTGAAACTACTGGTGTCAGACGAAAAGAAGGATCCTATATTAATAAGAGTCTGCTAACTCTAGGAACTGTTATATCAAAGTTGACGGATGGGAGGGCTACTCATATACCCTACAGGGATTCTAAACTGACCCGACTTCTCCAATCTTCGCTAAGTGGTCATGGGCGTGTCTCTCTCATCTGCACTGTTACTCCTTCATCAAGCAGTTCAGAAGAGACGCATAATACATTAAAGTTTGCGCACCGGGCAAAGCACATTGAAATTCAAGCAGCACAAAATAAGATTATTGATGAGAAGTCACTTATCAAGAAATATCAAAATGAGATTCGTAATTTAAAGGAAGAGTTAGAACAGTTGAAGAAGGGTATTGTTACAGTTCCTCAACTAAAAGATGCTAGCGAAAATGATATTCTGCTTCTAAAACAAAAGTTAGAAGATGGCAAATTCAAACTGCAATCAAGATTGGAACAAGAGGAAGAAGCCAAAGCTGCTTTGTTAGGAAGAATCCAAAGGTTGACAAAGTTGATTTTGGTCTCCACAAAAGCAACACAGCCATCAAGGTTTCCTCACCGACCTGGTCTTAGAAGAAGACATTCCTTTGGGGAAGAGGAGCTTGCATATCTACCATACAAAAGGCGGGACTTGATTTTAGAGGATGAAAACATTGACTTGTTTGTTTCTCCTCTTGAGGGGAATACTGAAACTGCTGATGCGCTGAAGGAGGATAAGAAGACTCGGAAGCATGGACTGTTAAACTGGTTAAAGCTACGGTCTTTGGATTTAGAGCATCTTACGGATAATGTGAAAGATGTGATTCATATTAATGGACTCAACTTGGGTGCTACTGAGAAGGATGGGGAGAATGTACCAATGGTTGTAGATTTGGATATCCAAAAGGGTGAATGTCAGTGTGTCACCAACTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

396

Amino Acids

44.53

Weight (kDa)

7.26

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	28 - 173	2.5e-51	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12020 AT3G12020 AT3G12020 AT3G12020 AT5G06670 AT5G06670 AT5G06670 AT5G06670
fragaria_vesca	FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780
malus_domestica	MD12G1054300.v1.1 MD14G1053100.v1.1
prunus_persica	Prupe.7G082400_v2.0.a1
pyrus_communis	pycom12g04730 pycom14g04410
rosa_chinensis	RchiOBHm_Chr3g0479141
rosa_laevigata	RLG00000023604
rosa_multiflora	Rmu_co8049936.1_g000001 Rmu_co8383491.1_g000001 Rmu_sc0002555.1_g000005
rosa_roxburghii	Rroxscaffold_6G00402700
rosa_rugosa	Rorug03G0171300 Rorug03G0171400
rosa_samantha	Rh3AG222600 Rh3BG255100 Rh3CG250700 Rh3DG247100 Rh6AG090700 Rh6BG153100 Rh6CG078500 Rh6DG074300 Rh6DG137500
rosa_wichuraiana	Rw0G001170 Rw1G014040 Rw3G019950 Rw6G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	501
AciI	CCGC	1 cut(s)	898
AclWI	GGATC	3 cut(s)	118, 288, 301
AcsI	RAATTY	3 cut(s)	118, 522, 704
AcuI	CTGAAG	1 cut(s)	998
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	1128
AfiI	CCNNNNNNNGG	2 cut(s)	184, 950
AgsI	TTSAA	6 cut(s)	124, 226, 521, 527, 619, 709
AjnI	CCWGG	1 cut(s)	835
AluBI	AGCT	6 cut(s)	206, 255, 263, 749, 874, 1027
AluI	AGCT	6 cut(s)	206, 255, 263, 749, 874, 1027
Alw21I	GWGCWC	2 cut(s)	99, 257
Alw26I	GTCTC	3 cut(s)	436, 470, 799
AlwI	GGATC	3 cut(s)	118, 288, 301
ApeKI	GCWGC	2 cut(s)	530, 749
ApoI	RAATTY	3 cut(s)	118, 522, 704
AseI	ATTAAT	2 cut(s)	303, 1083
Asp700I	GAANNNNTTC	1 cut(s)	853
AspLEI	GCGC	2 cut(s)	502, 976
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	4 cut(s)	212, 821, 1168, 1172
AsuNHI	GCTAGC	1 cut(s)	656
BamHI	GGATCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	856, 998
Bbv12I	GWGCWC	2 cut(s)	99, 257
BbvI	GCAGC	2 cut(s)	542, 736
BccI	CCATC	4 cut(s)	344, 692, 823, 1109
BciT130I	CCWGG	1 cut(s)	837
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	3 cut(s)	436, 470, 799
BfaI	CTAG	2 cut(s)	323, 657
BfmI	CTRYAG	1 cut(s)	373
BisI	GCNGC	2 cut(s)	531, 750
BlsI	GCNGC	2 cut(s)	532, 751
Bme1390I	CCNGG	2 cut(s)	506, 837
BmiI	GGNNCC	2 cut(s)	143, 295
BmrFI	CCNGG	2 cut(s)	506, 837
BmsI	GCATC	3 cut(s)	643, 961, 1057
BmtI	GCTAGC	1 cut(s)	660
BpiI	GAAGAC	2 cut(s)	856, 998
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpuEI	CTTGAG	1 cut(s)	968
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	799
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 950
Bse1I	ACTGG	2 cut(s)	277, 1022
Bse8I	GATNNNNATC	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	837
BseGI	GGATG	3 cut(s)	355, 922, 1120
BseJI	GATNNNNATC	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	184, 950
BseMII	CTCAG	3 cut(s)	145, 240, 1098
BseNI	ACTGG	2 cut(s)	277, 1022
BseRI	GAGGAG	2 cut(s)	884, 933
BseXI	GCAGC	2 cut(s)	542, 736
BsgI	GTGCAG	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	99, 257
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	2 cut(s)	184, 950
BsmAI	GTCTC	3 cut(s)	436, 470, 799
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	914
Bso31I	GGTCTC	1 cut(s)	799
Bsp1286I	GDGCHC	2 cut(s)	99, 257
Bsp143I	GATC	4 cut(s)	66, 110, 235, 293
BspACI	CCGC	1 cut(s)	898
BspCNI	CTCAG	3 cut(s)	144, 241, 1099
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	143, 295
BspOI	GCTAGC	1 cut(s)	660
BspPI	GGATC	3 cut(s)	118, 288, 301
BspTNI	GGTCTC	1 cut(s)	799
BsrI	ACTGG	2 cut(s)	277, 1022
BssMI	GATC	4 cut(s)	66, 110, 235, 293
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	6 cut(s)	331, 448, 615, 637, 1011, 1032
Bst6I	CTCTTC	3 cut(s)	468, 597, 861
BstC8I	GCNNGC	2 cut(s)	658, 876
BstDEI	CTNAG	5 cut(s)	131, 249, 413, 842, 1107
BstF5I	GGATG	3 cut(s)	355, 922, 1120
BstHHI	GCGC	2 cut(s)	502, 976
BstKTI	GATC	4 cut(s)	69, 113, 238, 296
BstMAI	GTCTC	3 cut(s)	436, 470, 799
BstMBI	GATC	4 cut(s)	66, 110, 235, 293
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 749
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	504, 835
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	542, 736
BstV2I	GAAGAC	2 cut(s)	856, 998
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BtsCI	GGATG	3 cut(s)	355, 922, 1120
BtsIMutI	CAGTG	2 cut(s)	444, 1175
Cac8I	GCNNGC	2 cut(s)	658, 876
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	2 cut(s)	502, 976
CseI	GACGC	1 cut(s)	487
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	1 cut(s)	1127
CviAII	CATG	4 cut(s)	44, 104, 422, 1004
CviQI	GTAC	1 cut(s)	1127
DdeI	CTNAG	5 cut(s)	131, 249, 413, 842, 1107
DpnI	GATC	4 cut(s)	68, 112, 237, 295
DpnII	GATC	4 cut(s)	66, 110, 235, 293
DraI	TTTAAA	1 cut(s)	597
DraIII	CACNNNGTG	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	468, 597, 861
EarI	CTCTTC	3 cut(s)	468, 597, 861
Ecl136II	GAGCTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	799
Eco32I	GATATC	1 cut(s)	1150
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	998
EcoICRI	GAGCTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	835
EcoRV	GATATC	1 cut(s)	1150
EcoT38I	GRGCYC	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	4 cut(s)	47, 107, 425, 1007
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	4 cut(s)	43, 103, 421, 1003
FauI	CCCGC	1 cut(s)	891
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	531, 750
FokI	GGATG	3 cut(s)	362, 929, 1127
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	531, 750
FspBI	CTAG	2 cut(s)	323, 657
FspI	TGCGCA	1 cut(s)	501
GlaI	GCGC	2 cut(s)	501, 975
GluI	GCNGC	2 cut(s)	531, 750
HapII	CCGG	1 cut(s)	505
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	2 cut(s)	502, 976
Hin1II	CATG	4 cut(s)	47, 107, 425, 1007
Hin6I	GCGC	2 cut(s)	500, 974
HinP1I	GCGC	2 cut(s)	500, 974
HincII	GTYRAC	3 cut(s)	87, 345, 777
HindII	GTYRAC	3 cut(s)	87, 345, 777
HinfI	GANTC	8 cut(s)	55, 310, 380, 586, 765, 994, 1075, 1089
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	4 cut(s)	212, 821, 1168, 1172
Hpy166II	GTNNAC	3 cut(s)	87, 345, 777
Hpy188I	TCNGA	5 cut(s)	76, 250, 281, 472, 999
Hpy188III	TCNNGA	5 cut(s)	44, 169, 568, 720, 947
Hpy8I	GTNNAC	3 cut(s)	87, 345, 777
HpyAV	CCTTC	6 cut(s)	191, 284, 465, 616, 973, 1105
HpyCH4III	ACNGT	6 cut(s)	331, 448, 615, 637, 1011, 1032
HpyCH4V	TGCA	3 cut(s)	444, 715, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 749
HpyF3I	CTNAG	5 cut(s)	131, 249, 413, 842, 1107
Hsp92II	CATG	4 cut(s)	47, 107, 425, 1007
HspAI	GCGC	2 cut(s)	500, 974
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	66, 110, 235, 293
LmnI	GCTCC	2 cut(s)	141, 871
Lsp1109I	GCAGC	2 cut(s)	542, 736
LweI	GCATC	3 cut(s)	643, 961, 1057
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	2 cut(s)	323, 657
MaeIII	GTNAC	4 cut(s)	448, 558, 631, 1174
MalI	GATC	4 cut(s)	68, 112, 237, 295
MboI	GATC	4 cut(s)	66, 110, 235, 293
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	2 cut(s)	99, 257
MluCI	AATT	7 cut(s)	77, 118, 124, 221, 522, 592, 704
MlyI	GAGTC	3 cut(s)	319, 988, 1083
MmeI	TCCRAC	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	853
MseI	TTAA	6 cut(s)	303, 491, 596, 1013, 1022, 1083
MslI	CAYNNNNRTG	3 cut(s)	102, 426, 1083
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	2 cut(s)	506, 837
MunI	CAATTG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	2 cut(s)	506, 749
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	66, 110, 235, 293
NheI	GCTAGC	1 cut(s)	656
NlaIII	CATG	4 cut(s)	47, 107, 425, 1007
NlaIV	GGNNCC	2 cut(s)	143, 295
NmuCI	GTSAC	2 cut(s)	558, 1174
NsbI	TGCGCA	1 cut(s)	501
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	853
PfeI	GAWTC	5 cut(s)	55, 380, 586, 765, 1075
PflFI	GACNNNGTC	1 cut(s)	837
PkrI	GCNGC	2 cut(s)	532, 751
PleI	GAGTC	3 cut(s)	318, 988, 1083
PpsI	GAGTC	3 cut(s)	318, 988, 1083
PshBI	ATTAAT	2 cut(s)	303, 1083
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	835
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	2 cut(s)	143, 295
PsuI	RGATCY	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	837
RsaI	GTAC	1 cut(s)	1128
RsaNI	GTAC	1 cut(s)	1127
RseI	CAYNNNNRTG	3 cut(s)	102, 426, 1083
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	6 cut(s)	303, 491, 596, 1013, 1022, 1083
SatI	GCNGC	2 cut(s)	531, 750
Sau3AI	GATC	4 cut(s)	66, 110, 235, 293
SchI	GAGTC	3 cut(s)	319, 988, 1083
ScrFI	CCNGG	2 cut(s)	506, 837
SduI	GDGCHC	2 cut(s)	99, 257
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	3 cut(s)	643, 961, 1057
SfcI	CTRYAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	3 cut(s)	102, 426, 1083
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	7 cut(s)	77, 118, 124, 221, 522, 592, 704
SsiI	CCGC	1 cut(s)	898
SspMI	CTAG	2 cut(s)	323, 657
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	504, 835
TaaI	ACNGT	6 cut(s)	331, 448, 615, 637, 1011, 1032
TaqI	TCGA	2 cut(s)	19, 168
TasI	AATT	7 cut(s)	77, 118, 124, 221, 522, 592, 704
TfiI	GAWTC	5 cut(s)	55, 380, 586, 765, 1075
Tru1I	TTAA	6 cut(s)	303, 491, 596, 1013, 1022, 1083
Tru9I	TTAA	6 cut(s)	303, 491, 596, 1013, 1022, 1083
TscAI	CASTG	2 cut(s)	451, 1175
TseFI	GTSAC	2 cut(s)	558, 1174
TseI	GCWGC	2 cut(s)	530, 749
Tsp45I	GTSAC	2 cut(s)	558, 1174
TspDTI	ATGAA	4 cut(s)	32, 447, 933, 1067
TspGWI	ACGGA	2 cut(s)	362, 1070
TspRI	CASTG	2 cut(s)	451, 1175
Tth111I	GACNNNGTC	1 cut(s)	837
VspI	ATTAAT	2 cut(s)	303, 1083
XapI	RAATTY	3 cut(s)	118, 522, 704
XceI	RCATGY	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	853
XspI	CTAG	2 cut(s)	323, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.