Rmu_co8118088.1_g000001

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8118088.1
OG0011787
Physical Location & Seq
Reverse (-)
2 .. 617
616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8118088.1_g000001.1.cds

Sequence Viewer

Length: 616 bp
cggccgccacgcaactcggctaccccgattcactcgactcctccccccgatcccgcaatgccgactcttcttgggacgccgagcctctccctcaggtccccggcgccaagctccgcctcatgtgcagctacggcggccacatcctcccccgcccgcacgacaagtcgctctgctacgtcggcggcgagactcgcattgtcgtcgccgaacgccactcctccctctccgacctctgctcccgcctctcccgtaccctcctcaacggccgccccttctctctcaagtaccagctcccgacggaggacctcgactccctcatctccgtcaccaccgacgaggatctcgacaacatggtggaggagtacgaccgcacctcgtcctccgcctcgccgttgaagccgtcgtcgcggctccgtctctttctcttcttcggcaaaccggacacggcggcgtccatgggggccttgctcgacgacgccaagtccgagtcgtggttcgtcgacgcgctcaacggctcgggtctgatgccgcgaaacctctccgactcggcggccaccatggactgcttgttgaccggcgggagtgattcttgcaacgacttggaggcggcggcggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

205

Amino Acids

22.08

Weight (kDa)

4.68

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18230
fragaria_vesca FvH4_5g16730
malus_domestica MD06G1221200.v1.1 MD14G1230400.v1.1
prunus_persica Prupe.5G225400_v2.0.a1 Prupe.5G225400_v2.0.a1 Prupe.5G225400_v2.0.a1
pyrus_communis pycom14g19170
rosa_chinensis RchiOBHm_Chr7g0179361
rosa_laevigata RLG00000005362
rosa_multiflora Rmu_co8118088.1_g000001 Rmu_sc0019996.1_g000002
rosa_roxburghii Rroxscaffold_3G00274090
rosa_rugosa Rorug06G0423800.1
rosa_samantha Rh7AG023200 Rh7BG022800 Rh7CG024100 Rh7DG023600
rosa_wichuraiana Rw7G001870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 500
AccII CGCG 3 cut(s) 408, 505, 531
AclWI GGATC 2 cut(s) 44, 347
AcoI YGGCCR 4 cut(s) 2, 135, 264, 551
AcyI GRCGYC 4 cut(s) 77, 104, 451, 476
AfaI GTAC 3 cut(s) 252, 286, 364
AfiI CCNNNNNNNGG 2 cut(s) 300, 491
AgsI TTSAA 1 cut(s) 396
AhdI GACNNNNNGTC 1 cut(s) 480
AluBI AGCT 3 cut(s) 111, 128, 291
AluI AGCT 3 cut(s) 111, 128, 291
Alw26I GTCTC 2 cut(s) 181, 421
AlwI GGATC 2 cut(s) 44, 347
Ama87I CYCGRG 1 cut(s) 516
AoxI GGCC 5 cut(s) 2, 135, 264, 461, 551
ApeKI GCWGC 1 cut(s) 125
AspLEI GCGC 2 cut(s) 106, 507
AspS9I GGNCC 3 cut(s) 96, 303, 461
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 516
AvaII GGWCC 2 cut(s) 96, 303
AxyI CCTNAGG 1 cut(s) 92
BanI GGYRCC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 137
BceAI ACGGC 6 cut(s) 147, 279, 375, 384, 461, 528
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 181, 421
BfoI RGCGCY 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 2 cut(s) 96, 303
BmeRI GACNNNNNGTC 1 cut(s) 480
BmeT110I CYCGRG 1 cut(s) 516
BmgT120I GGNCC 3 cut(s) 96, 303, 461
BmiI GGNNCC 4 cut(s) 98, 105, 412, 462
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 4 cut(s) 77, 104, 451, 476
BsaJI CCNNGG 3 cut(s) 99, 455, 557
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 295, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 491
Bse118I RCCGGY 1 cut(s) 574
Bse21I CCTNAGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 99, 455, 557
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 300, 491
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 106
BseRI GAGGAG 4 cut(s) 30, 207, 247, 373
BseX3I CGGCCG 2 cut(s) 2, 264
BseXI GCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 144
Bsh1236I CGCG 3 cut(s) 408, 505, 531
Bsh1285I CGRYCG 3 cut(s) 5, 267, 369
BshFI GGCC 5 cut(s) 4, 137, 266, 463, 553
BshNI GGYRCC 1 cut(s) 103
BsiEI CGRYCG 3 cut(s) 5, 267, 369
BsiHKCI CYCGRG 1 cut(s) 516
BsiSI CCGG 3 cut(s) 101, 439, 575
BslFI GGGAC 2 cut(s) 82, 88
BslI CCNNNNNNNGG 2 cut(s) 300, 491
BsmAI GTCTC 2 cut(s) 181, 421
BsmBI CGTCTC 1 cut(s) 421
BsmFI GGGAC 2 cut(s) 82, 88
BsnI GGCC 5 cut(s) 4, 137, 266, 463, 553
BsoBI CYCGRG 1 cut(s) 516
Bsp143I GATC 2 cut(s) 49, 339
Bsp19I CCATGG 2 cut(s) 455, 557
BspANI GGCC 5 cut(s) 4, 137, 266, 463, 553
BspCNI CTCAG 1 cut(s) 105
BspFNI CGCG 3 cut(s) 408, 505, 531
BspLI GGNNCC 4 cut(s) 98, 105, 412, 462
BspPI GGATC 2 cut(s) 44, 347
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 574
BssAI RCCGGY 1 cut(s) 574
BssECI CCNNGG 3 cut(s) 99, 455, 557
BssMI GATC 2 cut(s) 49, 339
BssNI GRCGYC 4 cut(s) 77, 104, 451, 476
BssT1I CCWWGG 2 cut(s) 455, 557
Bst6I CTCTTC 2 cut(s) 72, 430
BstACI GRCGYC 4 cut(s) 77, 104, 451, 476
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 92
BstDSI CCRYGG 2 cut(s) 455, 557
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 3 cut(s) 408, 505, 531
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 2 cut(s) 106, 507
BstKTI GATC 2 cut(s) 52, 342
BstMAI GTCTC 2 cut(s) 181, 421
BstMBI GATC 2 cut(s) 49, 339
BstMCI CGRYCG 3 cut(s) 5, 267, 369
BstMWI GCNNNNNNNGC 8 cut(s) 122, 131, 134, 179, 191, 396, 405, 613
BstSCI CCNGG 1 cut(s) 99
BstUI CGCG 3 cut(s) 408, 505, 531
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BstZI CGGCCG 2 cut(s) 2, 264
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 5 cut(s) 4, 137, 266, 463, 553
BtgI CCRYGG 2 cut(s) 455, 557
BtsCI GGATG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 2 cut(s) 106, 507
Cfr10I RCCGGY 1 cut(s) 574
Cfr13I GGNCC 3 cut(s) 96, 303, 461
CseI GACGC 4 cut(s) 85, 440, 484, 511
Csp6I GTAC 3 cut(s) 251, 285, 363
CviAII CATG 4 cut(s) 120, 351, 456, 558
CviQI GTAC 3 cut(s) 251, 285, 363
DdeI CTNAG 1 cut(s) 92
DinI GGCGCC 1 cut(s) 105
DpnI GATC 2 cut(s) 51, 341
DpnII GATC 2 cut(s) 49, 339
DriI GACNNNNNGTC 1 cut(s) 480
EaeI YGGCCR 4 cut(s) 2, 135, 264, 551
EagI CGGCCG 2 cut(s) 2, 264
Eam1104I CTCTTC 2 cut(s) 72, 430
Eam1105I GACNNNNNGTC 1 cut(s) 480
EarI CTCTTC 2 cut(s) 72, 430
EciI GGCGGA 2 cut(s) 103, 372
EclXI CGGCCG 2 cut(s) 2, 264
Eco130I CCWWGG 2 cut(s) 455, 557
Eco47I GGWCC 2 cut(s) 96, 303
Eco52I CGGCCG 2 cut(s) 2, 264
Eco81I CCTNAGG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 516
EcoO109I RGGNCCY 3 cut(s) 96, 303, 461
EcoT14I CCWWGG 2 cut(s) 455, 557
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 455, 557
Esp3I CGTCTC 1 cut(s) 421
FaeI CATG 4 cut(s) 123, 354, 459, 561
FaiI YATR 4 cut(s) 121, 352, 457, 559
FaqI GGGAC 2 cut(s) 82, 88
FatI CATG 4 cut(s) 119, 350, 455, 557
FauI CCCGC 5 cut(s) 61, 157, 161, 247, 571
FblI GTMKAC 1 cut(s) 500
FokI GGATG 1 cut(s) 127
GlaI GCGC 2 cut(s) 105, 506
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 5 cut(s) 4, 137, 266, 463, 553
HapII CCGG 3 cut(s) 101, 439, 575
HgaI GACGC 4 cut(s) 85, 440, 484, 511
HhaI GCGC 2 cut(s) 106, 507
Hin1I GRCGYC 4 cut(s) 77, 104, 451, 476
Hin1II CATG 4 cut(s) 123, 354, 459, 561
Hin6I GCGC 2 cut(s) 104, 505
HinP1I GCGC 2 cut(s) 104, 505
HincII GTYRAC 2 cut(s) 501, 572
HindII GTYRAC 2 cut(s) 501, 572
HinfI GANTC 8 cut(s) 28, 37, 64, 189, 310, 487, 544, 586
HpaII CCGG 3 cut(s) 101, 439, 575
HphI GGTGA 1 cut(s) 318
Hpy166II GTNNAC 2 cut(s) 501, 572
Hpy188I TCNGA 4 cut(s) 228, 486, 524, 543
Hpy188III TCNNGA 2 cut(s) 294, 343
Hpy8I GTNNAC 2 cut(s) 501, 572
HpyAV CCTTC 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 125, 593
HpyF10VI GCNNNNNNNGC 8 cut(s) 122, 131, 134, 179, 191, 396, 405, 613
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 176
Hsp92I GRCGYC 4 cut(s) 77, 104, 451, 476
Hsp92II CATG 4 cut(s) 123, 354, 459, 561
HspAI GCGC 2 cut(s) 104, 505
KasI GGCGCC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 49, 339
LmnI GCTCC 4 cut(s) 116, 241, 296, 416
LpnPI CCDG 5 cut(s) 79, 114, 301, 452, 588
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 515
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 324
MalI GATC 2 cut(s) 51, 341
MboI GATC 2 cut(s) 49, 339
MboII GAAGA 3 cut(s) 59, 417, 420
MflI RGATCY 1 cut(s) 339
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 6 cut(s) 31, 58, 183, 304, 496, 538
MmeI TCCRAC 2 cut(s) 251, 566
MspI CCGG 3 cut(s) 101, 439, 575
MspR9I CCNGG 1 cut(s) 101
MvnI CGCG 3 cut(s) 408, 505, 531
MwoI GCNNNNNNNGC 8 cut(s) 122, 131, 134, 179, 191, 396, 405, 613
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 2 cut(s) 455, 557
NdeII GATC 2 cut(s) 49, 339
NlaIII CATG 4 cut(s) 123, 354, 459, 561
NlaIV GGNNCC 4 cut(s) 98, 105, 412, 462
NmeAIII GCCGAG 2 cut(s) 105, 526
NmuCI GTSAC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 4 cut(s) 23, 182, 341, 482
PfeI GAWTC 2 cut(s) 28, 586
PleI GAGTC 6 cut(s) 31, 58, 183, 304, 495, 538
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 6 cut(s) 31, 58, 183, 304, 495, 538
PpuMI RGGWCCY 2 cut(s) 96, 303
Psp5II RGGWCCY 2 cut(s) 96, 303
PspN4I GGNNCC 4 cut(s) 98, 105, 412, 462
PspPI GGNCC 3 cut(s) 96, 303, 461
PspPPI RGGWCCY 2 cut(s) 96, 303
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 3 cut(s) 252, 286, 364
RsaNI GTAC 3 cut(s) 251, 285, 363
SalI GTCGAC 1 cut(s) 499
Sau3AI GATC 2 cut(s) 49, 339
Sau96I GGNCC 3 cut(s) 96, 303, 461
SchI GAGTC 6 cut(s) 31, 58, 183, 304, 496, 538
ScrFI CCNGG 1 cut(s) 101
SetI ASST 9 cut(s) 98, 113, 130, 179, 233, 293, 308, 376, 539
SfaNI GCATC 1 cut(s) 515
SfoI GGCGCC 1 cut(s) 105
SgrDI CGTCGACG 1 cut(s) 499
SinI GGWCC 2 cut(s) 96, 303
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SspDI GGCGCC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 2 cut(s) 455, 557
TaiI ACGT 1 cut(s) 179
TaqI TCGA 5 cut(s) 35, 308, 344, 470, 500
TfiI GAWTC 2 cut(s) 28, 586
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 324
TspGWI ACGGA 3 cut(s) 312, 313, 403
VpaK11BI GGWCC 2 cut(s) 96, 303
XmiI GTMKAC 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.