Rroxscaffold_3G00274090

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011787
Physical Location & Seq
Reverse (-)
65775921 .. 65778807
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274090.1

Sequence Viewer

Length: 1977 bp
ATGTGCAGCTACGGCGGCCACATCCTCCCCCGCCCGCACGACAAGTCGCTCTGCTACGTCGGCGGCGAGACTCGCATTGTCGTCGCCGACCGCCACTCCTCCCTCTCCGACCTCTGTTCCCGCCTCTCCCGTACTCTCCTCAACGGCCGCCCTTTCTCCCTCAAGTACCAGCTCCCGACGGAGGACCTCGACTCCCTCATCTCCGTCACCACCGACGAGGATCTCGACAACATGGTGGAGGAGTACGACCGCACCTCCTCCTCCGCCTCGCCGTTGAAGCCGTCGTCGCGGCTCCGTCTCTTTCTCTTCTTCGGCAAACCGGAGACGGCGGCGTCCATGGGGGCCTTGCTCGACGACGCCAAGTCCGAGTCGTGGTTCGTCGACGCGCTCAACGGCTCGGGTCTGATGCCGCGAAACCTCTCCGACTCGGCGGCCACCATGGACTGCTTGTTGACCGGCGGGAGTGATTCTTGCAACGACCTGGAGGCGGCGGCGGTGAGTCAAGGCGACTTCTTTGGGGATCATAACAGTGGAAAACCTAGTGTGGCGGTTCAAGAAGTGCATTCGATTTCGGAATCGGCGTTTGTGGAGAGCAATACGTCGTCGTCTGGATCGTCTTCTTCGTCGCCTTGCTTGTCGAATTTGCCGCCAATTCGGGTTAGAATGGACGGAAATGTGGCCGGAGTAGTGCAGGGTCAGAAGCCGGCTGGGATTGAGGAGCAGTTTGCTCAGATAAGCTTTGCTGCTGCACCAACAATGGTGGCTGCTGGTGGTTCTGGAGCTTTGAGTACTAATCCTATGGCTGTGAACTCAAGAGGAGGCGAAACTATGAACAGGATCAACTCGGAGGATGATATTTCTGGTCAGAATGTGCCTGTGGGTTTTCGAAAGCCGCCTTTGCCAATGCCATTGCAGCCGCAGCATTTTAAGCAGGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTTATAGCTTGCCTTCACCGGATTCGGTTGCAAGTGATAGTAGCATTGCGTCTGCAAACTCTCTGTCGAAACCAATGTACTATCAAGAGCAAGTTCAAGTTGCAGCTAGAGATGGCAGAGCTCCTGTTAGCCCGAATACAACAAGTGATGCTTCGGATCAGGGTTCCCGAAACCAAGTTCAACAAGTTCAGGATTCAGGGTACAGTGTGCCTCCGCAATCAGATCAACAACAGCAAATTCAGCTTCAGCAACAACAGCAGCAACAGCAGCAACTGCTACAGCAGCAGCAGCAACAACAACAACAACAGCTCCAACAGCAGCATCTCCAGCAGCAGCAACAATTTGTTCATGCAAGCGCGCAATATATGAATATTCAGCACCCTGCTACTGGTCAAGTGCCAGTGTCACCGTACTACACAATGTATGCTCCACCATCACAGCAGCAACAGCTTCATCACCAAATCGATCATCAGCAGCAGTATCCAGTCTATTTGATGCCTGTTGCACAGTCGCAACAACCATACAAGATGGCTCTGCAGTCTACAATAGCTGACCCAACTGGCGTTGCCTCGACCCGCATTACATCCCAAAACCCTGCTGCTTACAAGGACAGTATTCCACCCACTTATCCCTCAAAGACAGCTTCACCTGCTATGCCTGAAATGACTCAAAGTGTTTACCAGACCTCTGTGACACCAACTCCTCAATTAGTCCAAATCCCTTCCAACCAATATCAGCAGCAATTTGTTGGTTACTCTCAAATGCATCATCCTTCTCAGTCCATTGCTGTTCCTTCCTCTGCGACAGCACCCAACTATGCGTACGAATATGCCAATCCTTCACATGAACAAGTATACTACACCCAGCATCAAGCAGCCCCATTGCCTTCTCAATATCAATCCATGACTCCAGCAGCTGCCGCCGCAGCAGTAGCAATGTCAGATGAATCAAAGCAGATTTATATGCATTCGAGCAAAACGTTTCTCGATCTTGTCCAGAAGGCATCGGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

658

Amino Acids

70.89

Weight (kDa)

5.32

Isoelectric Point (pI)

69.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 13 - 103 1.2e-17 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18230
fragaria_vesca FvH4_5g16730
malus_domestica MD06G1221200.v1.1 MD14G1230400.v1.1
prunus_persica Prupe.5G225400_v2.0.a1 Prupe.5G225400_v2.0.a1 Prupe.5G225400_v2.0.a1
pyrus_communis pycom14g19170
rosa_chinensis RchiOBHm_Chr7g0179361
rosa_laevigata RLG00000005362
rosa_multiflora Rmu_co8118088.1_g000001 Rmu_sc0019996.1_g000002
rosa_roxburghii Rroxscaffold_3G00274090
rosa_rugosa Rorug06G0423800.1
rosa_samantha Rh7AG023200 Rh7BG022800 Rh7CG024100 Rh7DG023600
rosa_wichuraiana Rw7G001870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1618
AasI GACNNNNNNGTC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 1618
AccI GTMKAC 3 cut(s) 381, 1502, 1815
AccII CGCG 4 cut(s) 289, 386, 412, 1319
AclI AACGTT 1 cut(s) 1940
AclWI GGATC 5 cut(s) 228, 528, 619, 845, 1125
AcoI YGGCCR 4 cut(s) 16, 145, 432, 678
AcsI RAATTY 2 cut(s) 640, 1197
AcuI CTGAAG 1 cut(s) 1190
AcyI GRCGYC 2 cut(s) 332, 357
AfaI GTAC 8 cut(s) 133, 167, 245, 790, 1040, 1163, 1373, 1784
AfiI CCNNNNNNNGG 4 cut(s) 181, 372, 487, 1349
AgsI TTSAA 4 cut(s) 277, 554, 1058, 1142
AhdI GACNNNNNGTC 1 cut(s) 361
AjnI CCWGG 1 cut(s) 480
Alw21I GWGCWC 1 cut(s) 1084
Alw26I GTCTC 3 cut(s) 62, 302, 317
AlwI GGATC 5 cut(s) 228, 528, 619, 845, 1125
AlwNI CAGNNNCTG 2 cut(s) 1234, 1877
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 5 cut(s) 16, 145, 342, 432, 678
ApoI RAATTY 2 cut(s) 640, 1197
ArsI GACNNNNNNTTYG 2 cut(s) 1010, 1042
AspLEI GCGC 3 cut(s) 388, 1319, 1321
AspS9I GGNCC 2 cut(s) 184, 342
AsuHPI GGTGA 6 cut(s) 199, 508, 969, 1359, 1409, 1599
AsuII TTCGAA 1 cut(s) 886
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 1084
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 1084
BccI CCATC 3 cut(s) 1067, 1402, 1483
BceAI ACGGC 6 cut(s) 28, 160, 256, 265, 342, 409
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciT130I CCWGG 1 cut(s) 482
BciVI GTATCC 1 cut(s) 1452
BcoDI GTCTC 3 cut(s) 62, 302, 317
BfaI CTAG 2 cut(s) 540, 1068
BfmI CTRYAG 2 cut(s) 1238, 1496
BfuAI ACCTGC 1 cut(s) 1618
BfuI GTATCC 1 cut(s) 1452
BmcAI AGTACT 1 cut(s) 790
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 1 cut(s) 184
BmeRI GACNNNNNGTC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 184, 342
BmiI GGNNCC 3 cut(s) 293, 343, 1126
BmrFI CCNGG 1 cut(s) 482
BmsI GCATC 7 cut(s) 396, 1099, 1291, 1446, 1735, 1837, 1973
BpiI GAAGAC 1 cut(s) 609
BpmI CTGGAG 4 cut(s) 503, 798, 1271, 1854
Bpu14I TTCGAA 1 cut(s) 886
BpuEI CTTGAG 2 cut(s) 146, 796
Bsa29I ATCGAT 1 cut(s) 1425
BsaHI GRCGYC 2 cut(s) 332, 357
BsaJI CCNNGG 2 cut(s) 336, 438
BsaWI WCCGGW 2 cut(s) 319, 979
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 372, 487, 1349
Bse118I RCCGGY 2 cut(s) 455, 703
Bse1I ACTGG 4 cut(s) 1354, 1361, 1445, 1525
Bse3DI GCAATG 5 cut(s) 908, 1005, 1743, 1841, 1902
BseBI CCWGG 1 cut(s) 482
BseCI ATCGAT 1 cut(s) 1425
BseDI CCNNGG 2 cut(s) 336, 438
BseGI GGATG 4 cut(s) 21, 856, 1544, 1729
BseLI CCNNNNNNNGG 4 cut(s) 181, 372, 487, 1349
BseMI GCAATG 5 cut(s) 908, 1005, 1743, 1841, 1902
BseMII CTCAG 2 cut(s) 743, 1751
BseNI ACTGG 4 cut(s) 1354, 1361, 1445, 1525
BsePI GCGCGC 1 cut(s) 1317
BseRI GAGGAG 8 cut(s) 88, 128, 247, 250, 254, 731, 831, 1653
BseX3I CGGCCG 1 cut(s) 145
BseYI CCCAGC 2 cut(s) 707, 1824
BsgI GTGCAG 3 cut(s) 25, 710, 732
Bsh1236I CGCG 4 cut(s) 289, 386, 412, 1319
Bsh1285I CGRYCG 3 cut(s) 91, 148, 250
BshFI GGCC 5 cut(s) 18, 147, 344, 434, 680
BshVI ATCGAT 1 cut(s) 1425
BsiEI CGRYCG 3 cut(s) 91, 148, 250
BsiHKAI GWGCWC 1 cut(s) 1084
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 5 cut(s) 320, 456, 681, 704, 980
BsiWI CGTACG 1 cut(s) 1782
BslI CCNNNNNNNGG 4 cut(s) 181, 372, 487, 1349
BsmAI GTCTC 3 cut(s) 62, 302, 317
BsmBI CGTCTC 2 cut(s) 302, 317
BsmI GAATGC 2 cut(s) 562, 1927
BsnI GGCC 5 cut(s) 18, 147, 344, 434, 680
BsoBI CYCGRG 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 886
Bsp1286I GDGCHC 1 cut(s) 1084
Bsp143I GATC 8 cut(s) 220, 520, 611, 837, 1117, 1183, 1426, 1948
Bsp19I CCATGG 2 cut(s) 336, 438
BspANI GGCC 5 cut(s) 18, 147, 344, 434, 680
BspCNI CTCAG 2 cut(s) 742, 1750
BspDI ATCGAT 1 cut(s) 1425
BspFNI CGCG 4 cut(s) 289, 386, 412, 1319
BspLI GGNNCC 3 cut(s) 293, 343, 1126
BspMAI CTGCAG 1 cut(s) 1500
BspMI ACCTGC 1 cut(s) 1618
BspPI GGATC 5 cut(s) 228, 528, 619, 845, 1125
BspT104I TTCGAA 1 cut(s) 886
BsrDI GCAATG 5 cut(s) 908, 1005, 1743, 1841, 1902
BsrFI RCCGGY 2 cut(s) 455, 703
BsrI ACTGG 4 cut(s) 1354, 1361, 1445, 1525
BssAI RCCGGY 2 cut(s) 455, 703
BssECI CCNNGG 2 cut(s) 336, 438
BssHII GCGCGC 1 cut(s) 1317
BssMI GATC 8 cut(s) 220, 520, 611, 837, 1117, 1183, 1426, 1948
BssNAI GTATAC 1 cut(s) 1816
BssNI GRCGYC 2 cut(s) 332, 357
BssT1I CCWWGG 2 cut(s) 336, 438
Bst1107I GTATAC 1 cut(s) 1816
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 5 cut(s) 530, 1166, 1371, 1470, 1574
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 332, 357
BstAPI GCANNNNNTGC 2 cut(s) 1234, 1970
BstBI TTCGAA 1 cut(s) 886
BstC8I GCNNGC 5 cut(s) 35, 705, 971, 1315, 1319
BstDEI CTNAG 2 cut(s) 729, 1737
BstDSI CCRYGG 2 cut(s) 336, 438
BstF5I GGATG 4 cut(s) 21, 856, 1544, 1729
BstFNI CGCG 4 cut(s) 289, 386, 412, 1319
BstHHI GCGC 3 cut(s) 388, 1319, 1321
BstKTI GATC 8 cut(s) 223, 523, 614, 840, 1120, 1186, 1429, 1951
BstMAI GTCTC 3 cut(s) 62, 302, 317
BstMBI GATC 8 cut(s) 220, 520, 611, 837, 1117, 1183, 1426, 1948
BstMCI CGRYCG 3 cut(s) 91, 148, 250
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 480
BstSFI CTRYAG 2 cut(s) 1238, 1496
BstUI CGCG 4 cut(s) 289, 386, 412, 1319
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZ17I GTATAC 1 cut(s) 1816
BstZI CGGCCG 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 1425
BsuI GTATCC 1 cut(s) 1452
BsuRI GGCC 5 cut(s) 18, 147, 344, 434, 680
BsuTUI ATCGAT 1 cut(s) 1425
BtgI CCRYGG 2 cut(s) 336, 438
BtsCI GGATG 4 cut(s) 21, 856, 1544, 1729
BtsIMutI CAGTG 3 cut(s) 535, 1171, 1368
BveI ACCTGC 1 cut(s) 1618
Cac8I GCNNGC 5 cut(s) 35, 705, 971, 1315, 1319
CaiI CAGNNNCTG 2 cut(s) 1234, 1877
CfoI GCGC 3 cut(s) 388, 1319, 1321
Cfr10I RCCGGY 2 cut(s) 455, 703
Cfr13I GGNCC 2 cut(s) 184, 342
ClaI ATCGAT 1 cut(s) 1425
CseI GACGC 4 cut(s) 321, 365, 392, 999
Csp6I GTAC 8 cut(s) 132, 166, 244, 789, 1039, 1162, 1372, 1783
CspCI CAANNNNNGTGG 2 cut(s) 741, 776
CviAII CATG 6 cut(s) 232, 337, 439, 1310, 1805, 1864
CviQI GTAC 8 cut(s) 132, 166, 244, 789, 1039, 1162, 1372, 1783
DdeI CTNAG 2 cut(s) 729, 1737
DpnI GATC 8 cut(s) 222, 522, 613, 839, 1119, 1185, 1428, 1950
DpnII GATC 8 cut(s) 220, 520, 611, 837, 1117, 1183, 1426, 1948
DrdI GACNNNNNNGTC 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 331
EaeI YGGCCR 4 cut(s) 16, 145, 432, 678
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 311
Eam1105I GACNNNNNGTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 253
Ecl136II GAGCTC 1 cut(s) 1082
EclXI CGGCCG 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 336, 438
Eco24I GRGCYC 1 cut(s) 1084
Eco47I GGWCC 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 1082
Eco57I CTGAAG 1 cut(s) 1190
Eco88I CYCGRG 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 1082
EcoO109I RGGNCCY 2 cut(s) 184, 342
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 2 cut(s) 336, 438
EcoT22I ATGCAT 2 cut(s) 1728, 1929
EcoT38I GRGCYC 1 cut(s) 1084
ErhI CCWWGG 2 cut(s) 336, 438
Esp3I CGTCTC 2 cut(s) 302, 317
FaeI CATG 6 cut(s) 235, 340, 442, 1313, 1808, 1867
FalI AAGNNNNNCTT 2 cut(s) 1096, 1128
FatI CATG 6 cut(s) 231, 336, 438, 1309, 1804, 1863
FauI CCCGC 5 cut(s) 38, 42, 128, 452, 1544
FblI GTMKAC 3 cut(s) 381, 1502, 1815
FokI GGATG 4 cut(s) 8, 863, 1531, 1716
FriOI GRGCYC 1 cut(s) 1084
FspBI CTAG 2 cut(s) 540, 1068
GlaI GCGC 3 cut(s) 387, 1318, 1320
GsaI CCCAGC 2 cut(s) 711, 1828
GsuI CTGGAG 4 cut(s) 503, 798, 1271, 1854
HaeIII GGCC 5 cut(s) 18, 147, 344, 434, 680
HapII CCGG 5 cut(s) 320, 456, 681, 704, 980
HgaI GACGC 4 cut(s) 321, 365, 392, 999
HhaI GCGC 3 cut(s) 388, 1319, 1321
Hin1I GRCGYC 2 cut(s) 332, 357
Hin1II CATG 6 cut(s) 235, 340, 442, 1313, 1808, 1867
Hin6I GCGC 3 cut(s) 386, 1317, 1319
HinP1I GCGC 3 cut(s) 386, 1317, 1319
HincII GTYRAC 2 cut(s) 382, 453
HindII GTYRAC 2 cut(s) 382, 453
HindIII AAGCTT 1 cut(s) 736
HpaII CCGG 5 cut(s) 320, 456, 681, 704, 980
HphI GGTGA 6 cut(s) 199, 508, 969, 1359, 1409, 1599
Hpy166II GTNNAC 6 cut(s) 382, 453, 808, 1503, 1639, 1816
Hpy8I GTNNAC 6 cut(s) 382, 453, 808, 1503, 1639, 1816
HpyAV CCTTC 7 cut(s) 984, 1692, 1743, 1764, 1809, 1857, 1954
HpyCH4III ACNGT 5 cut(s) 530, 1166, 1371, 1470, 1574
HpyCH4IV ACGT 3 cut(s) 57, 599, 1940
HpyF3I CTNAG 2 cut(s) 729, 1737
HpySE526I ACGT 3 cut(s) 57, 599, 1940
Hsp92I GRCGYC 2 cut(s) 332, 357
Hsp92II CATG 6 cut(s) 235, 340, 442, 1313, 1808, 1867
HspAI GCGC 3 cut(s) 386, 1317, 1319
KroI GCCGGC 1 cut(s) 703
KroNI GCCGGC 1 cut(s) 705
Kzo9I GATC 8 cut(s) 220, 520, 611, 837, 1117, 1183, 1426, 1948
LmnI GCTCC 7 cut(s) 177, 297, 718, 779, 1087, 1275, 1393
LweI GCATC 7 cut(s) 396, 1099, 1291, 1446, 1735, 1837, 1973
MaeI CTAG 2 cut(s) 540, 1068
MaeII ACGT 3 cut(s) 57, 599, 1940
MaeIII GTNAC 4 cut(s) 205, 1365, 1651, 1712
MalI GATC 8 cut(s) 222, 522, 613, 839, 1119, 1185, 1428, 1950
MboI GATC 8 cut(s) 220, 520, 611, 837, 1117, 1183, 1426, 1948
MboII GAAGA 4 cut(s) 298, 301, 609, 612
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 1084
MluCI AATT 6 cut(s) 640, 651, 1197, 1301, 1667, 1703
MlyI GAGTC 7 cut(s) 64, 185, 377, 419, 508, 1621, 1861
MmeI TCCRAC 4 cut(s) 132, 447, 1297, 1710
Mph1103I ATGCAT 2 cut(s) 1728, 1929
MroNI GCCGGC 1 cut(s) 703
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 1877
MspI CCGG 5 cut(s) 320, 456, 681, 704, 980
MspR9I CCNGG 1 cut(s) 482
Mva1269I GAATGC 2 cut(s) 562, 1927
MvaI CCWGG 1 cut(s) 482
MvnI CGCG 4 cut(s) 289, 386, 412, 1319
NaeI GCCGGC 1 cut(s) 705
NcoI CCATGG 2 cut(s) 336, 438
NdeII GATC 8 cut(s) 220, 520, 611, 837, 1117, 1183, 1426, 1948
NgoMIV GCCGGC 1 cut(s) 703
NlaIII CATG 6 cut(s) 235, 340, 442, 1313, 1808, 1867
NlaIV GGNNCC 3 cut(s) 293, 343, 1126
NmeAIII GCCGAG 1 cut(s) 407
NmuCI GTSAC 3 cut(s) 205, 1365, 1651
NsiI ATGCAT 2 cut(s) 1728, 1929
NspV TTCGAA 1 cut(s) 886
PaqCI CACCTGC 1 cut(s) 1618
PauI GCGCGC 1 cut(s) 1317
PcsI WCGNNNNNNNCGW 7 cut(s) 63, 222, 363, 578, 611, 620, 1937
PctI GAATGC 2 cut(s) 562, 1927
PdiI GCCGGC 1 cut(s) 705
PfeI GAWTC 5 cut(s) 467, 575, 983, 1154, 1907
Pfl23II CGTACG 1 cut(s) 1782
PleI GAGTC 7 cut(s) 64, 185, 376, 419, 507, 1621, 1861
PpsI GAGTC 7 cut(s) 64, 185, 376, 419, 507, 1621, 1861
PpuMI RGGWCCY 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 1084
Psp1406I AACGTT 1 cut(s) 1940
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 480
PspFI CCCAGC 2 cut(s) 707, 1824
PspGI CCWGG 1 cut(s) 480
PspLI CGTACG 1 cut(s) 1782
PspN4I GGNNCC 3 cut(s) 293, 343, 1126
PspPI GGNCC 2 cut(s) 184, 342
PspPPI RGGWCCY 1 cut(s) 184
PstI CTGCAG 1 cut(s) 1500
PstNI CAGNNNCTG 2 cut(s) 1234, 1877
PsuI RGATCY 1 cut(s) 220
PteI GCGCGC 1 cut(s) 1317
PvuII CAGCTG 1 cut(s) 1877
RsaI GTAC 8 cut(s) 133, 167, 245, 790, 1040, 1163, 1373, 1784
RsaNI GTAC 8 cut(s) 132, 166, 244, 789, 1039, 1162, 1372, 1783
RseI CAYNNNNRTG 1 cut(s) 528
SacI GAGCTC 1 cut(s) 1084
SalI GTCGAC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 927
Sau3AI GATC 8 cut(s) 220, 520, 611, 837, 1117, 1183, 1426, 1948
Sau96I GGNCC 2 cut(s) 184, 342
ScaI AGTACT 1 cut(s) 790
SchI GAGTC 7 cut(s) 64, 185, 377, 419, 508, 1621, 1861
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 1084
SfaNI GCATC 7 cut(s) 396, 1099, 1291, 1446, 1735, 1837, 1973
SfcI CTRYAG 2 cut(s) 1238, 1496
SfuI TTCGAA 1 cut(s) 886
SgrDI CGTCGACG 1 cut(s) 380
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 2 cut(s) 161, 811
SmoI CTYRAG 2 cut(s) 161, 811
Sse9I AATT 6 cut(s) 640, 651, 1197, 1301, 1667, 1703
SspI AATATT 1 cut(s) 1333
SspMI CTAG 2 cut(s) 540, 1068
SstI GAGCTC 1 cut(s) 1084
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 2 cut(s) 336, 438
TaaI ACNGT 5 cut(s) 530, 1166, 1371, 1470, 1574
TaiI ACGT 3 cut(s) 60, 602, 1943
TasI AATT 6 cut(s) 640, 651, 1197, 1301, 1667, 1703
TatI WGTACW 2 cut(s) 788, 1038
TfiI GAWTC 5 cut(s) 467, 575, 983, 1154, 1907
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TscAI CASTG 3 cut(s) 535, 1171, 1368
TseFI GTSAC 3 cut(s) 205, 1365, 1651
Tsp45I GTSAC 3 cut(s) 205, 1365, 1651
TspDTI ATGAA 6 cut(s) 845, 1298, 1343, 1403, 1821, 1920
TspGWI ACGGA 4 cut(s) 193, 194, 284, 684
TspRI CASTG 3 cut(s) 535, 1171, 1368
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 2 cut(s) 640, 1197
XmiI GTMKAC 3 cut(s) 381, 1502, 1815
XspI CTAG 2 cut(s) 540, 1068
ZrmI AGTACT 1 cut(s) 790
Zsp2I ATGCAT 2 cut(s) 1728, 1929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.