Rh7CG024100

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011787
Physical Location & Seq
Forward (+)
1716304 .. 1719950
3647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG024100.1

Sequence Viewer

Length: 2115 bp
ATGGATCCACCGCCTCTCCCACCACTTCCGGCCGCCACGCAACTCGGCTACCCCGATTCACTCGACTCCTCCCCCCGATCCCGCAATGCCGACTCTTCTTGGGACGCCGAGCCTCTCCCTCAGGTCCCCGGCGCCAAGCTCCGCCTCATGTGCAGCTACGGCGGCCACATCCTCCCCCGCCCGCACGACAAGTCGCTCTGCTACGTCGGCGGCGAGACTCGCATTGTCGTCGCCGACCGCCACTCCTCCCTCTCCGACCTCTGCTCCCGCCTCTCCCGTACTCTCCTCAACGGCCGCCCCTTCTCTCTCAAGTACCAGCTCCCCACGGAGGACCTCGACTCCCTCATCTCCGTCACCACCGACGAGGATCTCGACAACATGGTGGAGGAGTACGACCGCACCTCCTCCTCCGCCTCGCCGTTGAAGCCGTCGTCGCGGCTCCGTCTCTTTCTCTTCTTCGGCAAACCGGAGACGGCGGCGTCCATGGGGGCCTTGCTCGACGACGCCAAGTCCGAGTCGTGGTTCGTCGACGCGCTCAACGGCTCGGGTCTGATGCCGCGAAACCTCTCCGACTCGGCGGCCACCATGGACTGCTTGTTGACCGGCGGTAGTGATTCTTGCAACGACTTGGAGGCGGCGGCGGCGGCGGCGAGTCAAGGTGACTTCTTTGGGGATCATGACAGTGGAAAACCTAGTGTGGCGGTTCAAGAAGTGCATTCGATTTCGGAATCGGCCTTTGTGGAGAGCAATACGTCGTCCTCTGGGTCGTCTTCTTCGTCGCCTTGCTTGTCAAATTTGCCGCCAATTAGGGTTAGAATGGACGGAAATGTGGCCGGAGTCGTGCAGGGACAGAAGCCGGCTGGGATTGAGGAGCAGTTTGCTCAGATAAGCTTTGCTGCTGCACCAACAATGGTGGCTGCTGCTGGTTCTGGAGCTTTGAGTACTAATCCTATGGCTGTGAACTCAGGAGGAGGTGAAACTATGAACAGGATCAACTCGGAGGATGATATTTCTGGTCAGAATGTGCCTGTGGGTTTTCGAAAGCCGCCTTTGCCAATGCCATTGCAGCCGCAGCATTTTAAGCAGGGAGGTGGAGGTGGAGGTTATAGCTTGCCTTCACCGGATTCGGTTGCAAGTGATAGTAGCATTGCGTCTGCAAACTCTTTGTCGAAACCAATGTACTATCAAGAGCAAGTTCAAGTTGCAGCTAGAGATGGCAGAGCTCCTGTTAGCCCGAATACAACAAGTGATGCTTCGGATCAGGGTTCCCGAAACCAAGTTCAACAAGTTCAGGATTCAGGGTACAGTGTGCCTCCGCAATCAGATCAACAACAGCAAATTCAGCTTCAGCAACAACAGCAGCAACAGCAACAACTACTACAGCAGCAGCAGCAGCAACAACAACAACAGCTCCAACAGCAGCATCTCCAGCAGCAGCAACAGCAGCAGCAACAATTTGTCCATGCAAGCGCGCAATATATGAATATTCAGCACCCTGGTACCGGTCAAGTGCCAGTGTCACCGTACTACACAATGTATGCTCCACCATCGCAGCAGCAACAGCTTCATCACCAAATTGATCATCAGCAGCAGTATCCAGTCTATTTGATGCCTGTTGCACAGTCGCAACAACCATACAAGATGGCTCTGCAGTCTACAATAGCTGATCCAACTGGTGTTGCCTCGACCCGCATTACTTCCCAAAACCCTGCTGCTTACAAGGACAGTATCCCACCCATTTATCCCTCAAAGACAGCTTCACCTGCTATGCCTGAAATGACTCAAAGTGTTTACCAGACCTCTGTGACACCAACTCCTCAATTAGTCCAAATCCCTTCCAACCAATATCAGCAGCAATTTGTTGGTTACTCTCAAATGCATCATCCTTCTCAGTCCATTGCTGTTCCTTCCTCTGCGACAGCACCCAACTATGCGTACGAATATGCCAATCCTTCACATGAACAAGTATACTACACCCAGCATCAAGCAGCCCCATCGCCTTCTCAATATCAATCCATGACTCCAGCAGCCGCCGCCGCAGCAGTAGCAATGTCAGATGAATCAAAGCAGGTAGCCGCATACTCAGCAGCAGATCAAAGCCACACACAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

704

Amino Acids

75.72

Weight (kDa)

5.0

Isoelectric Point (pI)

70.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 62 - 152 1.3e-17 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18230
fragaria_vesca FvH4_5g16730
malus_domestica MD06G1221200.v1.1 MD14G1230400.v1.1
prunus_persica Prupe.5G225400_v2.0.a1 Prupe.5G225400_v2.0.a1 Prupe.5G225400_v2.0.a1
pyrus_communis pycom14g19170
rosa_chinensis RchiOBHm_Chr7g0179361
rosa_laevigata RLG00000005362
rosa_multiflora Rmu_co8118088.1_g000001 Rmu_sc0019996.1_g000002
rosa_roxburghii Rroxscaffold_3G00274090
rosa_rugosa Rorug06G0423800.1
rosa_samantha Rh7AG023200 Rh7BG022800 Rh7CG024100 Rh7DG023600
rosa_wichuraiana Rw7G001870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1771
AasI GACNNNNNNGTC 1 cut(s) 478
Acc36I ACCTGC 2 cut(s) 1771, 2059
Acc65I GGTACC 1 cut(s) 1499
AccB1I GGYRCC 2 cut(s) 131, 1499
AccI GTMKAC 3 cut(s) 528, 1655, 1968
AccII CGCG 4 cut(s) 436, 533, 559, 1472
AclWI GGATC 7 cut(s) 12, 72, 375, 681, 998, 1266, 1661
AcoI YGGCCR 5 cut(s) 30, 163, 292, 579, 831
AcsI RAATTY 2 cut(s) 793, 1338
AcuI CTGAAG 1 cut(s) 1331
AcyI GRCGYC 4 cut(s) 105, 132, 479, 504
AfaI GTAC 9 cut(s) 280, 314, 392, 943, 1181, 1304, 1501, 1526, 1937
AfiI CCNNNNNNNGG 3 cut(s) 328, 519, 1502
AgeI ACCGGT 1 cut(s) 1502
AgsI TTSAA 4 cut(s) 424, 707, 1199, 1283
AhdI GACNNNNNGTC 1 cut(s) 508
AjnI CCWGG 1 cut(s) 1495
Alw21I GWGCWC 1 cut(s) 1225
Alw26I GTCTC 3 cut(s) 209, 449, 464
AlwI GGATC 7 cut(s) 12, 72, 375, 681, 998, 1266, 1661
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 7 cut(s) 30, 163, 292, 489, 579, 732, 831
ApoI RAATTY 2 cut(s) 793, 1338
ArsI GACNNNNNNTTYG 2 cut(s) 1151, 1183
AsiGI ACCGGT 1 cut(s) 1502
Asp718I GGTACC 1 cut(s) 1499
AspLEI GCGC 4 cut(s) 134, 535, 1472, 1474
AspS9I GGNCC 3 cut(s) 124, 331, 489
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 7 cut(s) 346, 671, 986, 1110, 1512, 1562, 1752
AsuII TTCGAA 1 cut(s) 1039
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 2 cut(s) 124, 331
AxyI CCTNAGG 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 1483, 1516
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 131, 1499
BanII GRGCYC 1 cut(s) 1225
BbsI GAAGAC 1 cut(s) 762
Bbv12I GWGCWC 1 cut(s) 1225
BccI CCATC 4 cut(s) 1208, 1555, 1636, 2002
BceAI ACGGC 6 cut(s) 175, 307, 403, 412, 489, 556
BcgI CGANNNNNNTGC 4 cut(s) 211, 245, 1977, 2011
BciT130I CCWGG 1 cut(s) 1497
BciVI GTATCC 2 cut(s) 1605, 1739
BclI TGATCA 1 cut(s) 1579
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 3 cut(s) 209, 449, 464
BfaI CTAG 2 cut(s) 693, 1209
BfmI CTRYAG 2 cut(s) 1379, 1649
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 2 cut(s) 1771, 2059
BfuI GTATCC 2 cut(s) 1605, 1739
BmcAI AGTACT 1 cut(s) 943
Bme1390I CCNGG 2 cut(s) 129, 1497
Bme18I GGWCC 2 cut(s) 124, 331
BmeRI GACNNNNNGTC 1 cut(s) 508
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 3 cut(s) 124, 331, 489
BmiI GGNNCC 7 cut(s) 6, 126, 133, 440, 490, 1267, 1501
BmrFI CCNGG 2 cut(s) 129, 1497
BmsI GCATC 6 cut(s) 543, 1240, 1432, 1599, 1888, 1990
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 3 cut(s) 951, 1412, 2007
Bpu14I TTCGAA 1 cut(s) 1039
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 129
BsaHI GRCGYC 4 cut(s) 105, 132, 479, 504
BsaJI CCNNGG 5 cut(s) 127, 324, 483, 585, 1495
BsaWI WCCGGW 3 cut(s) 466, 1120, 1502
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 519, 1502
Bse118I RCCGGY 3 cut(s) 602, 856, 1502
Bse1I ACTGG 3 cut(s) 1514, 1598, 1678
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 5 cut(s) 91, 1061, 1146, 1896, 2055
BseBI CCWGG 1 cut(s) 1497
BseDI CCNNGG 5 cut(s) 127, 324, 483, 585, 1495
BseGI GGATG 3 cut(s) 168, 1009, 1882
BseLI CCNNNNNNNGG 3 cut(s) 328, 519, 1502
BseMI GCAATG 5 cut(s) 91, 1061, 1146, 1896, 2055
BseMII CTCAG 5 cut(s) 134, 896, 978, 1904, 2097
BseNI ACTGG 3 cut(s) 1514, 1598, 1678
BsePI GCGCGC 1 cut(s) 1470
BseRI GAGGAG 9 cut(s) 58, 235, 275, 394, 397, 401, 884, 984, 1806
BseX3I CGGCCG 2 cut(s) 30, 292
BseYI CCCAGC 2 cut(s) 860, 1977
BsgI GTGCAG 3 cut(s) 172, 863, 885
Bsh1236I CGCG 4 cut(s) 436, 533, 559, 1472
Bsh1285I CGRYCG 4 cut(s) 33, 238, 295, 397
BshFI GGCC 7 cut(s) 32, 165, 294, 491, 581, 734, 833
BshNI GGYRCC 2 cut(s) 131, 1499
BshTI ACCGGT 1 cut(s) 1502
BsiEI CGRYCG 4 cut(s) 33, 238, 295, 397
BsiHKAI GWGCWC 1 cut(s) 1225
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 8 cut(s) 29, 129, 467, 603, 834, 857, 1121, 1503
BsiWI CGTACG 1 cut(s) 1935
BslFI GGGAC 3 cut(s) 110, 116, 861
BslI CCNNNNNNNGG 3 cut(s) 328, 519, 1502
BsmAI GTCTC 3 cut(s) 209, 449, 464
BsmBI CGTCTC 2 cut(s) 449, 464
BsmFI GGGAC 3 cut(s) 110, 116, 861
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 7 cut(s) 32, 165, 294, 491, 581, 734, 833
BsoBI CYCGRG 1 cut(s) 544
Bsp119I TTCGAA 1 cut(s) 1039
Bsp1286I GDGCHC 1 cut(s) 1225
Bsp19I CCATGG 2 cut(s) 483, 585
BspANI GGCC 7 cut(s) 32, 165, 294, 491, 581, 734, 833
BspCNI CTCAG 5 cut(s) 133, 895, 977, 1903, 2096
BspFNI CGCG 4 cut(s) 436, 533, 559, 1472
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 7 cut(s) 6, 126, 133, 440, 490, 1267, 1501
BspMAI CTGCAG 1 cut(s) 1653
BspMI ACCTGC 2 cut(s) 1771, 2059
BspPI GGATC 7 cut(s) 12, 72, 375, 681, 998, 1266, 1661
BspT104I TTCGAA 1 cut(s) 1039
BspT107I GGYRCC 2 cut(s) 131, 1499
BsrDI GCAATG 5 cut(s) 91, 1061, 1146, 1896, 2055
BsrFI RCCGGY 3 cut(s) 602, 856, 1502
BsrI ACTGG 3 cut(s) 1514, 1598, 1678
BssAI RCCGGY 3 cut(s) 602, 856, 1502
BssECI CCNNGG 5 cut(s) 127, 324, 483, 585, 1495
BssHII GCGCGC 1 cut(s) 1470
BssNAI GTATAC 1 cut(s) 1969
BssNI GRCGYC 4 cut(s) 105, 132, 479, 504
BssT1I CCWWGG 2 cut(s) 483, 585
Bst1107I GTATAC 1 cut(s) 1969
Bst2UI CCWGG 1 cut(s) 1497
Bst4CI ACNGT 5 cut(s) 683, 1307, 1524, 1623, 1727
Bst6I CTCTTC 2 cut(s) 100, 458
BstACI GRCGYC 4 cut(s) 105, 132, 479, 504
BstBI TTCGAA 1 cut(s) 1039
BstC8I GCNNGC 5 cut(s) 182, 858, 1112, 1468, 1472
BstDEI CTNAG 5 cut(s) 120, 882, 964, 1890, 2083
BstDSI CCRYGG 3 cut(s) 324, 483, 585
BstF5I GGATG 3 cut(s) 168, 1009, 1882
BstFNI CGCG 4 cut(s) 436, 533, 559, 1472
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 4 cut(s) 134, 535, 1472, 1474
BstMAI GTCTC 3 cut(s) 209, 449, 464
BstMCI CGRYCG 4 cut(s) 33, 238, 295, 397
BstNI CCWGG 1 cut(s) 1497
BstSCI CCNGG 2 cut(s) 127, 1495
BstSFI CTRYAG 2 cut(s) 1379, 1649
BstUI CGCG 4 cut(s) 436, 533, 559, 1472
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 2 cut(s) 4, 367
BstYI RGATCY 2 cut(s) 4, 367
BstZ17I GTATAC 1 cut(s) 1969
BstZI CGGCCG 2 cut(s) 30, 292
Bsu36I CCTNAGG 1 cut(s) 120
BsuI GTATCC 2 cut(s) 1605, 1739
BsuRI GGCC 7 cut(s) 32, 165, 294, 491, 581, 734, 833
BtgI CCRYGG 3 cut(s) 324, 483, 585
BtgZI GCGATG 2 cut(s) 1533, 1980
BtsCI GGATG 3 cut(s) 168, 1009, 1882
BtsIMutI CAGTG 3 cut(s) 688, 1312, 1521
BveI ACCTGC 2 cut(s) 1771, 2059
Cac8I GCNNGC 5 cut(s) 182, 858, 1112, 1468, 1472
CciI TCATGA 1 cut(s) 676
CfoI GCGC 4 cut(s) 134, 535, 1472, 1474
Cfr10I RCCGGY 3 cut(s) 602, 856, 1502
Cfr13I GGNCC 3 cut(s) 124, 331, 489
CseI GACGC 5 cut(s) 113, 468, 512, 539, 1140
Csp6I GTAC 9 cut(s) 279, 313, 391, 942, 1180, 1303, 1500, 1525, 1936
CspAI ACCGGT 1 cut(s) 1502
CspCI CAANNNNNGTGG 2 cut(s) 894, 929
CviAII CATG 8 cut(s) 148, 379, 484, 586, 677, 1463, 1958, 2017
CviQI GTAC 9 cut(s) 279, 313, 391, 942, 1180, 1303, 1500, 1525, 1936
DdeI CTNAG 5 cut(s) 120, 882, 964, 1890, 2083
DinI GGCGCC 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 478
DriI GACNNNNNGTC 1 cut(s) 508
DseDI GACNNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 5 cut(s) 30, 163, 292, 579, 831
EagI CGGCCG 2 cut(s) 30, 292
Eam1104I CTCTTC 2 cut(s) 100, 458
Eam1105I GACNNNNNGTC 1 cut(s) 508
EarI CTCTTC 2 cut(s) 100, 458
EciI GGCGGA 2 cut(s) 131, 400
Ecl136II GAGCTC 1 cut(s) 1223
EclXI CGGCCG 2 cut(s) 30, 292
Eco130I CCWWGG 2 cut(s) 483, 585
Eco24I GRGCYC 1 cut(s) 1225
Eco47I GGWCC 2 cut(s) 124, 331
Eco52I CGGCCG 2 cut(s) 30, 292
Eco53kI GAGCTC 1 cut(s) 1223
Eco57I CTGAAG 1 cut(s) 1331
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 1223
EcoO109I RGGNCCY 3 cut(s) 124, 331, 489
EcoRII CCWGG 1 cut(s) 1495
EcoT14I CCWWGG 2 cut(s) 483, 585
EcoT22I ATGCAT 1 cut(s) 1881
EcoT38I GRGCYC 1 cut(s) 1225
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 483, 585
Esp3I CGTCTC 2 cut(s) 449, 464
FaeI CATG 8 cut(s) 151, 382, 487, 589, 680, 1466, 1961, 2020
FalI AAGNNNNNCTT 2 cut(s) 1237, 1269
FaqI GGGAC 3 cut(s) 110, 116, 861
FatI CATG 8 cut(s) 147, 378, 483, 585, 676, 1462, 1957, 2016
FauI CCCGC 5 cut(s) 89, 185, 189, 275, 1697
FbaI TGATCA 1 cut(s) 1579
FblI GTMKAC 3 cut(s) 528, 1655, 1968
FokI GGATG 3 cut(s) 155, 1016, 1869
FriOI GRGCYC 1 cut(s) 1225
FspBI CTAG 2 cut(s) 693, 1209
GlaI GCGC 4 cut(s) 133, 534, 1471, 1473
GsaI CCCAGC 2 cut(s) 864, 1981
GsuI CTGGAG 3 cut(s) 951, 1412, 2007
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 7 cut(s) 32, 165, 294, 491, 581, 734, 833
HapII CCGG 8 cut(s) 29, 129, 467, 603, 834, 857, 1121, 1503
HgaI GACGC 5 cut(s) 113, 468, 512, 539, 1140
HhaI GCGC 4 cut(s) 134, 535, 1472, 1474
Hin1I GRCGYC 4 cut(s) 105, 132, 479, 504
Hin1II CATG 8 cut(s) 151, 382, 487, 589, 680, 1466, 1961, 2020
Hin6I GCGC 4 cut(s) 132, 533, 1470, 1472
HinP1I GCGC 4 cut(s) 132, 533, 1470, 1472
HincII GTYRAC 2 cut(s) 529, 600
HindII GTYRAC 2 cut(s) 529, 600
HindIII AAGCTT 1 cut(s) 889
HpaII CCGG 8 cut(s) 29, 129, 467, 603, 834, 857, 1121, 1503
HphI GGTGA 7 cut(s) 346, 671, 986, 1110, 1512, 1562, 1752
Hpy166II GTNNAC 6 cut(s) 529, 600, 961, 1656, 1792, 1969
Hpy188III TCNNGA 8 cut(s) 371, 677, 707, 930, 966, 1187, 1269, 1292
Hpy8I GTNNAC 6 cut(s) 529, 600, 961, 1656, 1792, 1969
HpyAV CCTTC 7 cut(s) 310, 1125, 1845, 1896, 1917, 1962, 2010
HpyCH4III ACNGT 5 cut(s) 683, 1307, 1524, 1623, 1727
HpyCH4IV ACGT 2 cut(s) 204, 752
HpyF3I CTNAG 5 cut(s) 120, 882, 964, 1890, 2083
HpySE526I ACGT 2 cut(s) 204, 752
Hsp92I GRCGYC 4 cut(s) 105, 132, 479, 504
Hsp92II CATG 8 cut(s) 151, 382, 487, 589, 680, 1466, 1961, 2020
HspAI GCGC 4 cut(s) 132, 533, 1470, 1472
KasI GGCGCC 1 cut(s) 131
KpnI GGTACC 1 cut(s) 1503
KroI GCCGGC 1 cut(s) 856
KroNI GCCGGC 1 cut(s) 858
Ksp22I TGATCA 1 cut(s) 1579
LmnI GCTCC 9 cut(s) 144, 269, 324, 444, 871, 932, 1228, 1416, 1546
LweI GCATC 6 cut(s) 543, 1240, 1432, 1599, 1888, 1990
MaeI CTAG 2 cut(s) 693, 1209
MaeII ACGT 2 cut(s) 204, 752
MaeIII GTNAC 5 cut(s) 352, 659, 1518, 1804, 1865
MboII GAAGA 5 cut(s) 87, 445, 448, 762, 765
MflI RGATCY 2 cut(s) 4, 367
MhlI GDGCHC 1 cut(s) 1225
MluCI AATT 7 cut(s) 793, 804, 1338, 1454, 1575, 1820, 1856
Mly113I GGCGCC 1 cut(s) 132
MmeI TCCRAC 5 cut(s) 279, 594, 1438, 1694, 1863
Mph1103I ATGCAT 1 cut(s) 1881
MroNI GCCGGC 1 cut(s) 856
MseI TTAA 1 cut(s) 1080
MslI CAYNNNNRTG 1 cut(s) 681
MspI CCGG 8 cut(s) 29, 129, 467, 603, 834, 857, 1121, 1503
MspR9I CCNGG 2 cut(s) 129, 1497
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 1497
MvnI CGCG 4 cut(s) 436, 533, 559, 1472
NaeI GCCGGC 1 cut(s) 858
NarI GGCGCC 1 cut(s) 132
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 2 cut(s) 483, 585
NgoMIV GCCGGC 1 cut(s) 856
NlaIII CATG 8 cut(s) 151, 382, 487, 589, 680, 1466, 1961, 2020
NlaIV GGNNCC 7 cut(s) 6, 126, 133, 440, 490, 1267, 1501
NmeAIII GCCGAG 3 cut(s) 24, 133, 554
NmuCI GTSAC 4 cut(s) 352, 659, 1518, 1804
NsiI ATGCAT 1 cut(s) 1881
NspV TTCGAA 1 cut(s) 1039
PagI TCATGA 1 cut(s) 676
PaqCI CACCTGC 1 cut(s) 1771
PauI GCGCGC 1 cut(s) 1470
PcsI WCGNNNNNNNCGW 5 cut(s) 51, 210, 369, 510, 773
PctI GAATGC 1 cut(s) 715
PdiI GCCGGC 1 cut(s) 858
PfeI GAWTC 6 cut(s) 56, 614, 728, 1124, 1295, 2060
Pfl23II CGTACG 1 cut(s) 1935
PinAI ACCGGT 1 cut(s) 1502
PluTI GGCGCC 1 cut(s) 135
PpuMI RGGWCCY 2 cut(s) 124, 331
Psp124BI GAGCTC 1 cut(s) 1225
Psp5II RGGWCCY 2 cut(s) 124, 331
Psp6I CCWGG 1 cut(s) 1495
PspFI CCCAGC 2 cut(s) 860, 1977
PspGI CCWGG 1 cut(s) 1495
PspLI CGTACG 1 cut(s) 1935
PspN4I GGNNCC 7 cut(s) 6, 126, 133, 440, 490, 1267, 1501
PspPI GGNCC 3 cut(s) 124, 331, 489
PspPPI RGGWCCY 2 cut(s) 124, 331
PstI CTGCAG 1 cut(s) 1653
PsuI RGATCY 2 cut(s) 4, 367
PteI GCGCGC 1 cut(s) 1470
RsaI GTAC 9 cut(s) 280, 314, 392, 943, 1181, 1304, 1501, 1526, 1937
RsaNI GTAC 9 cut(s) 279, 313, 391, 942, 1180, 1303, 1500, 1525, 1936
RseI CAYNNNNRTG 1 cut(s) 681
SacI GAGCTC 1 cut(s) 1225
SalI GTCGAC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 1080
Sau96I GGNCC 3 cut(s) 124, 331, 489
ScaI AGTACT 1 cut(s) 943
ScrFI CCNGG 2 cut(s) 129, 1497
SduI GDGCHC 1 cut(s) 1225
SfaNI GCATC 6 cut(s) 543, 1240, 1432, 1599, 1888, 1990
SfcI CTRYAG 2 cut(s) 1379, 1649
SfoI GGCGCC 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 1039
SgrDI CGTCGACG 1 cut(s) 527
SinI GGWCC 2 cut(s) 124, 331
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 7 cut(s) 793, 804, 1338, 1454, 1575, 1820, 1856
SspDI GGCGCC 1 cut(s) 131
SspI AATATT 1 cut(s) 1486
SspMI CTAG 2 cut(s) 693, 1209
SstI GAGCTC 1 cut(s) 1225
StyD4I CCNGG 2 cut(s) 127, 1495
StyI CCWWGG 2 cut(s) 483, 585
TaaI ACNGT 5 cut(s) 683, 1307, 1524, 1623, 1727
TaiI ACGT 2 cut(s) 207, 755
TaqI TCGA 9 cut(s) 63, 336, 372, 498, 528, 719, 1039, 1169, 1685
TasI AATT 7 cut(s) 793, 804, 1338, 1454, 1575, 1820, 1856
TatI WGTACW 2 cut(s) 941, 1179
TfiI GAWTC 6 cut(s) 56, 614, 728, 1124, 1295, 2060
Tru1I TTAA 1 cut(s) 1080
Tru9I TTAA 1 cut(s) 1080
TscAI CASTG 3 cut(s) 688, 1312, 1521
TseFI GTSAC 4 cut(s) 352, 659, 1518, 1804
Tsp45I GTSAC 4 cut(s) 352, 659, 1518, 1804
TspDTI ATGAA 5 cut(s) 998, 1496, 1556, 1974, 2073
TspGWI ACGGA 4 cut(s) 340, 341, 431, 837
TspRI CASTG 3 cut(s) 688, 1312, 1521
VpaK11BI GGWCC 2 cut(s) 124, 331
XapI RAATTY 2 cut(s) 793, 1338
XmiI GTMKAC 3 cut(s) 528, 1655, 1968
XspI CTAG 2 cut(s) 693, 1209
ZrmI AGTACT 1 cut(s) 943
Zsp2I ATGCAT 1 cut(s) 1881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.