Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8141282.1

Orthogroup ID

OG0006831

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 516

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8141282.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ggtgcaccactttgcactcactatgcacaacgtggagcatgcaaattcggggctgcatgcaaatttgaccacccaatgggaacactcagttacagtccatcagcgtcttctctcaccgatatgccagttgccccctacccagtgggatcgtcaattggtacgctagccccatcatcttcatcgtcagaattgcggcctgaacttaattcaggcaccagcaaggactcagtttctgccagaatgtcttcatcactgagcactgttagtggatcagttggttctactgtttctaaggatggtgttgcccatttgggtggccaactgtctgctcagggttctggcccttcaactaccagtgacaacagtacagagtgtcatagttcaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

129

Amino Acids

12.79

Weight (kDa)

6.43

Isoelectric Point (pI)

71.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06410 AT5G18550 AT5G18550 AT5G18550 AT5G18550
fragaria_vesca	FvH4_4g17640
malus_domestica	MD13G1171100.v1.1 MD16G1172700.v1.1
prunus_persica	Prupe.1G139500_v2.0.a1
pyrus_communis	pycom13g14660 pycom16g14480
rosa_chinensis	RchiOBHm_Chr4g0421561
rosa_laevigata	RLG00000007667
rosa_multiflora	Rmu_co8141282.1_g000001 Rmu_co8301593.1_g000001 Rmu_sc0010734.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363810
rosa_rugosa	Rorug04G0172800 Rorug04G0172900 Rorug04G0173000
rosa_samantha	Rh3AG118900 Rh4AG233200 Rh4BG235900 Rh4CG247500 Rh4DG231800
rosa_wichuraiana	Rw4G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	2 cut(s)	154, 277
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	44, 62
AdeI	CACNNNGTG	1 cut(s)	32
AfaI	GTAC	2 cut(s)	160, 367
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	348, 384
Alw21I	GWGCWC	2 cut(s)	7, 260
Alw44I	GTGCAC	1 cut(s)	3
AlwI	GGATC	2 cut(s)	154, 277
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	194, 316, 340
ApaLI	GTGCAC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	44, 62
Asp700I	GAANNNNTTC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	212
BbsI	GAAGAC	2 cut(s)	99, 237
Bbv12I	GWGCWC	2 cut(s)	7, 260
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	3 cut(s)	106, 178, 290
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	54, 194
BlsI	GCNGC	2 cut(s)	55, 195
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	134
BmtI	GCTAGC	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	134
BpiI	GAAGAC	2 cut(s)	99, 237
Bpu10I	CCTNAGC	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	125, 140, 354
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	4 cut(s)	100, 240, 245, 344
BseNI	ACTGG	3 cut(s)	125, 140, 354
BseSI	GKGCMC	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	3 cut(s)	196, 318, 342
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	2 cut(s)	7, 260
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	3 cut(s)	196, 318, 342
Bsp1286I	GDGCHC	2 cut(s)	7, 260
Bsp143I	GATC	2 cut(s)	146, 269
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	3 cut(s)	196, 318, 342
BspCNI	CTCAG	4 cut(s)	99, 239, 246, 343
BspLI	GGNNCC	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	154, 277
BspT107I	GGYRCC	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	125, 140, 354
BssMI	GATC	2 cut(s)	146, 269
Bst4CI	ACNGT	5 cut(s)	95, 262, 286, 324, 365
BstC8I	GCNNGC	3 cut(s)	40, 58, 165
BstDEI	CTNAG	5 cut(s)	86, 226, 254, 291, 330
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	2 cut(s)	149, 272
BstMBI	GATC	2 cut(s)	146, 269
BstNSI	RCATGY	2 cut(s)	42, 60
BstSLI	GKGCMC	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	2 cut(s)	99, 237
BstXI	CCANNNNNNTGG	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	196, 318, 342
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	4 cut(s)	147, 251, 258, 361
Cac8I	GCNNGC	3 cut(s)	40, 58, 165
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	159, 366
CviAII	CATG	2 cut(s)	39, 57
CviJI	RGCY	5 cut(s)	53, 167, 196, 318, 342
CviKI_1	RGCY	5 cut(s)	53, 167, 196, 318, 342
CviQI	GTAC	2 cut(s)	159, 366
DdeI	CTNAG	5 cut(s)	86, 226, 254, 291, 330
DpnI	GATC	2 cut(s)	148, 271
DpnII	GATC	2 cut(s)	146, 269
DraIII	CACNNNGTG	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	316
FaeI	CATG	2 cut(s)	42, 60
FaiI	YATR	5 cut(s)	24, 40, 58, 122, 378
FatI	CATG	2 cut(s)	38, 56
Fnu4HI	GCNGC	2 cut(s)	54, 194
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	54, 194
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	54, 194
HaeIII	GGCC	3 cut(s)	196, 318, 342
HgaI	GACGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	42, 60
HinfI	GANTC	1 cut(s)	224
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	5
Hpy188I	TCNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	5
HpyAV	CCTTC	1 cut(s)	354
HpyCH4III	ACNGT	5 cut(s)	95, 262, 286, 324, 365
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	6 cut(s)	5, 15, 26, 42, 56, 60
HpyF3I	CTNAG	5 cut(s)	86, 226, 254, 291, 330
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	2 cut(s)	42, 60
Kzo9I	GATC	2 cut(s)	146, 269
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	9 cut(s)	138, 153, 195, 210, 229, 250, 317, 324, 367
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	89, 356
MalI	GATC	2 cut(s)	148, 271
MboI	GATC	2 cut(s)	146, 269
MboII	GAAGA	3 cut(s)	99, 168, 237
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	7, 260
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	5 cut(s)	44, 62, 153, 188, 205
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	218
Mox20I	TGGCCA	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	2 cut(s)	204, 388
MslI	CAYNNNNRTG	2 cut(s)	119, 312
Msp20I	TGGCCA	1 cut(s)	318
MunI	CAATTG	1 cut(s)	153
NdeII	GATC	2 cut(s)	146, 269
NheI	GCTAGC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	42, 60
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	2 cut(s)	42, 60
PaeI	GCATGC	2 cut(s)	42, 60
PdmI	GAANNNNTTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	55, 195
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	341
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	160, 367
RsaNI	GTAC	2 cut(s)	159, 366
RseI	CAYNNNNRTG	2 cut(s)	119, 312
SaqAI	TTAA	2 cut(s)	204, 388
SatI	GCNGC	2 cut(s)	54, 194
Sau3AI	GATC	2 cut(s)	146, 269
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	218
SduI	GDGCHC	2 cut(s)	7, 260
SetI	ASST	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	119, 312
SphI	GCATGC	2 cut(s)	42, 60
Sse9I	AATT	5 cut(s)	44, 62, 153, 188, 205
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	1 cut(s)	164
TaaI	ACNGT	5 cut(s)	95, 262, 286, 324, 365
TaiI	ACGT	1 cut(s)	34
TasI	AATT	5 cut(s)	44, 62, 153, 188, 205
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	204, 388
Tru9I	TTAA	2 cut(s)	204, 388
TscAI	CASTG	4 cut(s)	147, 258, 265, 361
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	168, 237
TspRI	CASTG	4 cut(s)	147, 258, 265, 361
Van91I	CCANNNNNTGG	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	3
XapI	RAATTY	2 cut(s)	44, 62
XceI	RCATGY	2 cut(s)	42, 60
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.