Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006831

Physical Location & Seq

Genomic Coordinates Reverse (-)

45113053 .. 45117949

Gene Structure 4897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGAACACTCAGTTACAGTCCATCAGCGTCTTCTCTCACCGATATGCCAGTTGCCCCCTACCCAGTGGGATCGTCAATTGGTACGCTAGCTCCATCATCTTCATCGTCAGAATTGCGGCCTGAACTTAATTCAGGCACCAGCAAGGACTCAGTTTCTGCCAGAATGTCTTCATCACTGAGCACTGTTAGTGGATCAGTTGGTTCCACTGTTTCTAAGGATGGTGTTGCCCATTTGGGTGGCCAACTGTCTGCTCAGGGTTCTGGCCCTTCAACTACCAGTGACAACAGTACAGAGTCTCATAGTTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

104

Amino Acids

10.14

Weight (kDa)

4.96

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06410 AT5G18550 AT5G18550 AT5G18550 AT5G18550
fragaria_vesca	FvH4_4g17640
malus_domestica	MD13G1171100.v1.1 MD16G1172700.v1.1
prunus_persica	Prupe.1G139500_v2.0.a1
pyrus_communis	pycom13g14660 pycom16g14480
rosa_chinensis	RchiOBHm_Chr4g0421561
rosa_laevigata	RLG00000007667
rosa_multiflora	Rmu_co8141282.1_g000001 Rmu_co8301593.1_g000001 Rmu_sc0010734.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363810
rosa_rugosa	Rorug04G0172800 Rorug04G0172900 Rorug04G0173000
rosa_samantha	Rh3AG118900 Rh4AG233200 Rh4BG235900 Rh4CG247500 Rh4DG231800
rosa_wichuraiana	Rw4G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	2 cut(s)	79, 202
AcoI	YGGCCR	1 cut(s)	241
AfaI	GTAC	2 cut(s)	85, 292
AgsI	TTSAA	2 cut(s)	273, 309
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	79, 202
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	3 cut(s)	119, 241, 265
Asp700I	GAANNNNTTC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	24, 162
Bbv12I	GWGCWC	1 cut(s)	185
BccI	CCATC	3 cut(s)	31, 103, 215
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	139, 205
BmrI	ACTGGG	1 cut(s)	59
BmtI	GCTAGC	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	24, 162
Bpu10I	CCTNAGC	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bse1I	ACTGG	3 cut(s)	50, 65, 279
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	4 cut(s)	25, 165, 170, 269
BseNI	ACTGG	3 cut(s)	50, 65, 279
BshFI	GGCC	3 cut(s)	121, 243, 267
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	303
BsnI	GGCC	3 cut(s)	121, 243, 267
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	71, 194
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	3 cut(s)	121, 243, 267
BspCNI	CTCAG	4 cut(s)	24, 164, 171, 268
BspLI	GGNNCC	2 cut(s)	139, 205
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	79, 202
BspT107I	GGYRCC	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	50, 65, 279
BssMI	GATC	2 cut(s)	71, 194
Bst4CI	ACNGT	5 cut(s)	20, 187, 211, 249, 290
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	5 cut(s)	11, 151, 179, 216, 255
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	74, 197
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	71, 194
BstV2I	GAAGAC	2 cut(s)	24, 162
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	121, 243, 267
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	5 cut(s)	72, 176, 183, 207, 286
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	84, 291
CviJI	RGCY	4 cut(s)	92, 121, 243, 267
CviKI_1	RGCY	4 cut(s)	92, 121, 243, 267
CviQI	GTAC	2 cut(s)	84, 291
DdeI	CTNAG	5 cut(s)	11, 151, 179, 216, 255
DpnI	GATC	2 cut(s)	73, 196
DpnII	GATC	2 cut(s)	71, 194
EaeI	YGGCCR	1 cut(s)	241
FaiI	YATR	2 cut(s)	47, 303
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	121, 243, 267
HgaI	GACGC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	149, 296
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	5 cut(s)	20, 187, 211, 249, 290
HpyF3I	CTNAG	5 cut(s)	11, 151, 179, 216, 255
Kzo9I	GATC	2 cut(s)	71, 194
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	9 cut(s)	63, 78, 120, 135, 154, 175, 242, 249, 292
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	2 cut(s)	14, 281
MalI	GATC	2 cut(s)	73, 196
MboI	GATC	2 cut(s)	71, 194
MboII	GAAGA	3 cut(s)	24, 93, 162
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	3 cut(s)	78, 113, 130
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	143, 305
Mox20I	TGGCCA	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	2 cut(s)	129, 313
MslI	CAYNNNNRTG	2 cut(s)	44, 237
Msp20I	TGGCCA	1 cut(s)	243
MunI	CAATTG	1 cut(s)	78
NdeII	GATC	2 cut(s)	71, 194
NheI	GCTAGC	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	139, 205
NmuCI	GTSAC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	143, 304
PpsI	GAGTC	2 cut(s)	143, 304
PspN4I	GGNNCC	2 cut(s)	139, 205
PspPI	GGNCC	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	85, 292
RsaNI	GTAC	2 cut(s)	84, 291
RseI	CAYNNNNRTG	2 cut(s)	44, 237
SaqAI	TTAA	2 cut(s)	129, 313
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	71, 194
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	2 cut(s)	143, 305
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	1 cut(s)	94
SmiMI	CAYNNNNRTG	2 cut(s)	44, 237
Sse9I	AATT	3 cut(s)	78, 113, 130
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	5 cut(s)	20, 187, 211, 249, 290
TasI	AATT	3 cut(s)	78, 113, 130
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	129, 313
Tru9I	TTAA	2 cut(s)	129, 313
TscAI	CASTG	5 cut(s)	72, 183, 190, 214, 286
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	93, 162
TspRI	CASTG	5 cut(s)	72, 183, 190, 214, 286
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.