Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006831

Physical Location & Seq

Genomic Coordinates Reverse (-)

10213623 .. 10215117

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG118900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTGCGGGTCGCCTCGTCGAACGGTACAAGTACGATCGGGTTTCGGACCCGGAGAATCGTACCCGGAACAACCCGAGGAGGCCGATTGCAGTTACTATCTCAAGACTAGGATTTATGGGTGCGGCTCGAGGTGTCGGTACAATCACCCCCGTGATCGTATTGCGAACAAAACAGCTTCTGCAGCCTGCAGCCTATTTGAATATTGTTTAATTACAAAAGAATCCGACTTAAGTCTACCATCATACTTGAATACATCCGATGAAGCCACCCTTGCAGGTAATCCAATGAACTTGGGCATTTTCATGGCCGGCATCGATGAAGGAACACTCCTACAGAATAATATAATCCGACGAAATGCTTCGAACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

123

Amino Acids

13.61

Weight (kDa)

6.55

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06410 AT5G18550 AT5G18550 AT5G18550 AT5G18550
fragaria_vesca	FvH4_4g17640
malus_domestica	MD13G1171100.v1.1 MD16G1172700.v1.1
prunus_persica	Prupe.1G139500_v2.0.a1
pyrus_communis	pycom13g14660 pycom16g14480
rosa_chinensis	RchiOBHm_Chr4g0421561
rosa_laevigata	RLG00000007667
rosa_multiflora	Rmu_co8141282.1_g000001 Rmu_co8301593.1_g000001 Rmu_sc0010734.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363810
rosa_rugosa	Rorug04G0172800 Rorug04G0172900 Rorug04G0173000
rosa_samantha	Rh3AG118900 Rh4AG233200 Rh4BG235900 Rh4CG247500 Rh4DG231800
rosa_wichuraiana	Rw4G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	2 cut(s)	6, 123
AcoI	YGGCCR	1 cut(s)	306
AfaI	GTAC	4 cut(s)	27, 33, 62, 140
AflII	CTTAAG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	200, 250
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	2 cut(s)	74, 127
AoxI	GGCC	2 cut(s)	81, 306
ApeKI	GCWGC	2 cut(s)	182, 189
Asp700I	GAANNNNTTC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	2 cut(s)	51, 65
AsuHPI	GGTGA	1 cut(s)	137
AsuII	TTCGAA	1 cut(s)	362
AvaI	CYCGRG	2 cut(s)	74, 127
AvaII	GGWCC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	194, 201
BccI	CCATC	1 cut(s)	247
BcnI	CCSGG	2 cut(s)	51, 65
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	3 cut(s)	180, 187, 332
BfrI	CTTAAG	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	3 cut(s)	124, 183, 190
BlsI	GCNGC	3 cut(s)	125, 184, 191
Bme1390I	CCNGG	2 cut(s)	51, 65
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	2 cut(s)	74, 127
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	51, 65
BmsI	GCATC	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	51, 65
Bsa29I	ATCGAT	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	308
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	194, 201
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	83, 308
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	38
BsiHKCI	CYCGRG	2 cut(s)	74, 127
BsiSI	CCGG	3 cut(s)	51, 65, 309
BsnI	GGCC	2 cut(s)	83, 308
BsoBI	CYCGRG	2 cut(s)	74, 127
Bsp119I	TTCGAA	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	35, 154
BspACI	CCGC	2 cut(s)	6, 123
BspANI	GGCC	2 cut(s)	83, 308
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	2 cut(s)	184, 191
BspMI	ACCTGC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	35, 154
Bst4CI	ACNGT	1 cut(s)	25
BstAFI	CTTAAG	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	187, 310
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	38, 157
BstMBI	GATC	2 cut(s)	35, 154
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 272
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	49, 63
BstSFI	CTRYAG	3 cut(s)	180, 187, 332
BstV1I	GCAGC	2 cut(s)	194, 201
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	83, 308
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	187, 310
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	4 cut(s)	26, 32, 61, 139
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	7 cut(s)	83, 126, 176, 185, 192, 266, 308
CviKI_1	RGCY	7 cut(s)	83, 126, 176, 185, 192, 266, 308
CviQI	GTAC	4 cut(s)	26, 32, 61, 139
DpnI	GATC	2 cut(s)	37, 156
DpnII	GATC	2 cut(s)	35, 154
EaeI	YGGCCR	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	47
Eco88I	CYCGRG	2 cut(s)	74, 127
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	117, 244, 305, 344
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	124, 183, 190
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	3 cut(s)	124, 183, 190
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	3 cut(s)	124, 183, 190
HaeIII	GGCC	2 cut(s)	83, 308
HapII	CCGG	3 cut(s)	51, 65, 309
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	2 cut(s)	56, 221
HpaII	CCGG	3 cut(s)	51, 65, 309
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	4 cut(s)	47, 226, 259, 350
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	2 cut(s)	21, 354
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	90, 182, 189, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 272
Hsp92II	CATG	1 cut(s)	307
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	35, 154
LpnPI	CCDG	5 cut(s)	64, 78, 199, 261, 322
Lsp1109I	GCAGC	2 cut(s)	194, 201
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	37, 156
MboI	GATC	2 cut(s)	35, 154
MluCI	AATT	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	24, 70, 73, 123
MroNI	GCCGGC	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	2 cut(s)	209, 230
MslI	CAYNNNNRTG	2 cut(s)	150, 302
MspCI	CTTAAG	1 cut(s)	229
MspI	CCGG	3 cut(s)	51, 65, 309
MspR9I	CCNGG	2 cut(s)	51, 65
MwoI	GCNNNNNNNGC	2 cut(s)	182, 272
NaeI	GCCGGC	1 cut(s)	310
NciI	CCSGG	2 cut(s)	51, 65
NdeII	GATC	2 cut(s)	35, 154
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	150
PaeR7I	CTCGAG	1 cut(s)	127
PdiI	GCCGGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	56, 221
PkrI	GCNGC	3 cut(s)	125, 184, 191
Ple19I	CGATCG	1 cut(s)	38
PshAI	GACNNNNGTC	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	47
PspXI	VCTCGAGB	1 cut(s)	127
PstI	CTGCAG	2 cut(s)	184, 191
PstNI	CAGNNNCTG	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	38
RsaI	GTAC	4 cut(s)	27, 33, 62, 140
RsaNI	GTAC	4 cut(s)	26, 32, 61, 139
RseI	CAYNNNNRTG	2 cut(s)	150, 302
SaqAI	TTAA	2 cut(s)	209, 230
SatI	GCNGC	3 cut(s)	124, 183, 190
Sau3AI	GATC	2 cut(s)	35, 154
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	51, 65
SetI	ASST	3 cut(s)	134, 178, 280
SfaNI	GCATC	1 cut(s)	321
SfcI	CTRYAG	3 cut(s)	180, 187, 332
Sfr274I	CTCGAG	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	150, 302
SmlI	CTYRAG	3 cut(s)	101, 127, 229
SmoI	CTYRAG	3 cut(s)	101, 127, 229
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	2 cut(s)	6, 123
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	49, 63
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	4 cut(s)	19, 128, 315, 362
TasI	AATT	1 cut(s)	210
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	56, 221
Tru1I	TTAA	2 cut(s)	209, 230
Tru9I	TTAA	2 cut(s)	209, 230
TseI	GCWGC	2 cut(s)	182, 189
TspDTI	ATGAA	4 cut(s)	276, 292, 302, 333
Vha464I	CTTAAG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.