Rw4G020090

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0006831
Physical Location & Seq
Forward (+)
43783083 .. 43787792
4710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G020090.1

Sequence Viewer

Length: 1125 bp
ATGAGGACGGGGACGTGCAAATTTGGCGCCACTTGTAAGTATCACCATCCTAAGCAGGGAGGAGGCTCTGCGGCCCCTGTTTCACTAAATTACTATGGATACCCATTACGACCGGGTGAAAGAGAGTGTTCCTACTATGTGAAAACTGGACAGTGTAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCTGACTGGCACACAATCTCAAGTGCCATCACAAGCCCAAGCTTCAATTATACCTGCACCCACATTGTATCAAACTGTGCAAACTCCATCCGTTTCCTCACAGCCCTATGGAACAGTAATGGTTGCAAGACCTCCTTTGCTACCTAGCTCATACGTTCAAAGCCCCTATGGTCCAATGCTGATTCCCCCTGGAATGGTTCCTTTCTCAGGTTGGAGTCCATATCCGGCTGGTGCAAGCCCATTAGCGTCTCCTAGTACTCAAACCGCTGTTGGTTCAGGGGCACTTTATGGGATAAATCAACTATCTCCTTCAGCTCCTGCATATACAGGAATCTTTCCAACTGTACCTTTTTCTCTTGGTCCTCCAACCTCTAGCCAGAAGGAGCAATCTCATCCTGAAAGACCTGGCCAAGCAGAATGTCAGTATTACCTGAGAACAGGGGATTGTAAATTTGGGTCCTCATGTAGATATCATCATCCAGCAGAAGTTGTTGCACCAAATACACCTGTTGTCCTTAGCTCCATTGGTCTTCCGTCGCGCCCGGGTGCACCACTTTGCACTCACTATGCACAACGTGGAGCATGCAAATTCGGGGCTGCATGCAAATTTGACCACCCAATGGGAACACTCAGTTACAGTCCATCAGCGTCTTCTCTCACCGATATGCCAGTTGCCCCCTACCCAGTGGGATCGTCAATTGGTACGCTAGCCCCATCATCTTCATCGTCAGAATTGCGGCCTGAACTTAATTCAGGCACCAGCAAGGACTCAGTTTCTGCCAGAATGTCTTCATCACTGAGCACTGTTAGTGGATCAGTTGGTTCTACTGTTTCTAAGGATGGTGTTGCCCATTTGGGTGGCCAACTGTCTGCACAGGGTTCTGGCCCTTCAACTACCAGTGACAACAGTACAGAGTGTCATAGTTCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

374

Amino Acids

38.76

Weight (kDa)

8.85

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 1 - 18 3.3e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 38 - 64 1.3e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 200 - 224 2.1e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 246 - 271 5.2e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AccB1I GGYRCC 2 cut(s) 26, 947
AccB7I CCANNNNNTGG 1 cut(s) 811
AccII CGCG 1 cut(s) 730
AciI CCGC 3 cut(s) 71, 456, 928
AclWI GGATC 2 cut(s) 889, 1012
AcoI YGGCCR 2 cut(s) 598, 1051
AcsI RAATTY 5 cut(s) 20, 176, 641, 779, 797
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 767
AfaI GTAC 4 cut(s) 448, 537, 895, 1102
AfiI CCNNNNNNNGG 4 cut(s) 56, 385, 398, 811
AgsI TTSAA 4 cut(s) 237, 350, 1083, 1119
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 2 cut(s) 379, 595
AluBI AGCT 5 cut(s) 193, 233, 339, 506, 711
AluI AGCT 5 cut(s) 193, 233, 339, 506, 711
Alw21I GWGCWC 2 cut(s) 742, 995
Alw26I GTCTC 1 cut(s) 444
Alw44I GTGCAC 1 cut(s) 738
AlwI GGATC 2 cut(s) 889, 1012
AlwNI CAGNNNCTG 2 cut(s) 509, 968
Ama87I CYCGRG 1 cut(s) 733
AoxI GGCC 5 cut(s) 72, 598, 929, 1051, 1075
ApaLI GTGCAC 1 cut(s) 738
ApeKI GCWGC 1 cut(s) 788
ApoI RAATTY 5 cut(s) 20, 176, 641, 779, 797
Asp700I GAANNNNTTC 1 cut(s) 979
AspLEI GCGC 2 cut(s) 29, 732
AspS9I GGNCC 5 cut(s) 73, 362, 551, 648, 1076
AsuC2I CCSGG 3 cut(s) 114, 734, 735
AsuHPI GGTGA 3 cut(s) 35, 128, 841
AsuNHI GCTAGC 1 cut(s) 898
AvaI CYCGRG 1 cut(s) 733
AvaII GGWCC 3 cut(s) 362, 551, 648
BaeGI GKGCMC 2 cut(s) 475, 742
BalI TGGCCA 2 cut(s) 600, 1053
BanI GGYRCC 2 cut(s) 26, 947
BbsI GAAGAC 3 cut(s) 713, 834, 972
Bbv12I GWGCWC 2 cut(s) 742, 995
BbvI GCAGC 1 cut(s) 775
BccI CCATC 7 cut(s) 54, 189, 226, 286, 841, 913, 1025
BciT130I CCWGG 2 cut(s) 381, 597
BciVI GTATCC 1 cut(s) 92
BcnI CCSGG 3 cut(s) 114, 734, 735
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 4 cut(s) 336, 444, 564, 899
BfoI RGCGCY 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 253
BfuI GTATCC 1 cut(s) 92
BisI GCNGC 3 cut(s) 72, 789, 929
BlsI GCNGC 3 cut(s) 73, 790, 930
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 5 cut(s) 114, 381, 597, 734, 735
Bme18I GGWCC 3 cut(s) 362, 551, 648
BmeT110I CYCGRG 1 cut(s) 733
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 5 cut(s) 73, 362, 551, 648, 1076
BmiI GGNNCC 5 cut(s) 28, 75, 390, 649, 949
BmrFI CCNGG 5 cut(s) 114, 381, 597, 734, 735
BmrI ACTGGG 1 cut(s) 869
BmtI GCTAGC 1 cut(s) 902
BmuI ACTGGG 1 cut(s) 869
BpiI GAAGAC 3 cut(s) 713, 834, 972
Bpu10I CCTNAGC 2 cut(s) 51, 707
BpuEI CTTGAG 1 cut(s) 195
BpuMI CCSGG 3 cut(s) 114, 734, 735
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 379, 733
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 385, 398, 811
Bse1I ACTGG 5 cut(s) 151, 202, 860, 875, 1089
BseBI CCWGG 2 cut(s) 381, 597
BseDI CCNNGG 2 cut(s) 379, 733
BseGI GGATG 6 cut(s) 46, 184, 278, 583, 667, 1036
BseLI CCNNNNNNNGG 4 cut(s) 56, 385, 398, 811
BseMII CTCAG 5 cut(s) 411, 614, 835, 975, 980
BseNI ACTGG 5 cut(s) 151, 202, 860, 875, 1089
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 2 cut(s) 475, 742
BseXI GCAGC 1 cut(s) 775
BsgI GTGCAG 2 cut(s) 231, 1047
Bsh1236I CGCG 1 cut(s) 730
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 5 cut(s) 74, 600, 931, 1053, 1077
BshNI GGYRCC 2 cut(s) 26, 947
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 742, 995
BsiHKCI CYCGRG 1 cut(s) 733
BsiSI CCGG 3 cut(s) 113, 416, 734
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 4 cut(s) 56, 385, 398, 811
BsmAI GTCTC 1 cut(s) 444
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 5 cut(s) 74, 600, 931, 1053, 1077
BsoBI CYCGRG 1 cut(s) 733
Bsp1286I GDGCHC 3 cut(s) 475, 742, 995
Bsp143I GATC 2 cut(s) 881, 1004
BspACI CCGC 3 cut(s) 71, 456, 928
BspANI GGCC 5 cut(s) 74, 600, 931, 1053, 1077
BspCNI CTCAG 5 cut(s) 410, 615, 834, 974, 981
BspFNI CGCG 1 cut(s) 730
BspLI GGNNCC 5 cut(s) 28, 75, 390, 649, 949
BspMI ACCTGC 1 cut(s) 253
BspOI GCTAGC 1 cut(s) 902
BspPI GGATC 2 cut(s) 889, 1012
BspT107I GGYRCC 2 cut(s) 26, 947
BsrI ACTGG 5 cut(s) 151, 202, 860, 875, 1089
BssECI CCNNGG 2 cut(s) 379, 733
BssMI GATC 2 cut(s) 881, 1004
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 381, 597
Bst4CI ACNGT 9 cut(s) 153, 268, 307, 535, 830, 997, 1021, 1059, 1100
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 4 cut(s) 427, 775, 793, 900
BstDEI CTNAG 8 cut(s) 51, 397, 623, 707, 821, 961, 989, 1026
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 6 cut(s) 46, 184, 278, 583, 667, 1036
BstFNI CGCG 1 cut(s) 730
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 29, 732
BstKTI GATC 2 cut(s) 884, 1007
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 2 cut(s) 881, 1004
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 2 cut(s) 381, 597
BstNSI RCATGY 2 cut(s) 777, 795
BstSCI CCNGG 5 cut(s) 112, 379, 595, 732, 733
BstSLI GKGCMC 2 cut(s) 475, 742
BstUI CGCG 1 cut(s) 730
BstV1I GCAGC 1 cut(s) 775
BstV2I GAAGAC 3 cut(s) 713, 834, 972
BstXI CCANNNNNNTGG 1 cut(s) 1049
BsuI GTATCC 1 cut(s) 92
BsuRI GGCC 5 cut(s) 74, 600, 931, 1053, 1077
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 6 cut(s) 46, 184, 278, 583, 667, 1036
BtsIMutI CAGTG 5 cut(s) 158, 882, 986, 993, 1096
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 4 cut(s) 427, 775, 793, 900
CaiI CAGNNNCTG 2 cut(s) 509, 968
CfoI GCGC 2 cut(s) 29, 732
Cfr13I GGNCC 5 cut(s) 73, 362, 551, 648, 1076
Cfr9I CCCGGG 1 cut(s) 733
CseI GACGC 2 cut(s) 426, 828
Csp6I GTAC 4 cut(s) 447, 536, 894, 1101
CviAII CATG 3 cut(s) 654, 774, 792
CviQI GTAC 4 cut(s) 447, 536, 894, 1101
DdeI CTNAG 8 cut(s) 51, 397, 623, 707, 821, 961, 989, 1026
DinI GGCGCC 1 cut(s) 28
DpnI GATC 2 cut(s) 883, 1006
DpnII GATC 2 cut(s) 881, 1004
DraIII CACNNNGTG 1 cut(s) 767
EaeI YGGCCR 2 cut(s) 598, 1051
Eco32I GATATC 1 cut(s) 662
Eco47I GGWCC 3 cut(s) 362, 551, 648
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 733
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 648
EcoRII CCWGG 2 cut(s) 379, 595
EcoRV GATATC 1 cut(s) 662
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 3 cut(s) 657, 777, 795
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FaqI GGGAC 1 cut(s) 25
FatI CATG 3 cut(s) 653, 773, 791
Fnu4HI GCNGC 3 cut(s) 72, 789, 929
FokI GGATG 6 cut(s) 33, 171, 265, 570, 654, 1043
Fsp4HI GCNGC 3 cut(s) 72, 789, 929
FspBI CTAG 4 cut(s) 336, 444, 564, 899
GlaI GCGC 2 cut(s) 28, 731
GluI GCNGC 3 cut(s) 72, 789, 929
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 5 cut(s) 74, 600, 931, 1053, 1077
HapII CCGG 3 cut(s) 113, 416, 734
HgaI GACGC 2 cut(s) 426, 828
HhaI GCGC 2 cut(s) 29, 732
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 3 cut(s) 657, 777, 795
Hin6I GCGC 2 cut(s) 27, 730
HinP1I GCGC 2 cut(s) 27, 730
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 4 cut(s) 373, 406, 522, 959
HpaII CCGG 3 cut(s) 113, 416, 734
HphI GGTGA 3 cut(s) 35, 128, 841
Hpy166II GTNNAC 1 cut(s) 740
Hpy188I TCNGA 1 cut(s) 922
Hpy188III TCNNGA 1 cut(s) 587
Hpy8I GTNNAC 1 cut(s) 740
Hpy99I CGWCG 1 cut(s) 730
HpyAV CCTTC 3 cut(s) 510, 565, 1089
HpyCH4III ACNGT 9 cut(s) 153, 268, 307, 535, 830, 997, 1021, 1059, 1100
HpyCH4IV ACGT 3 cut(s) 14, 345, 766
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 8 cut(s) 51, 397, 623, 707, 821, 961, 989, 1026
HpySE526I ACGT 3 cut(s) 14, 345, 766
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 3 cut(s) 657, 777, 795
HspAI GCGC 2 cut(s) 27, 730
KasI GGCGCC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 881, 1004
LmnI GCTCC 4 cut(s) 511, 574, 716, 770
Lsp1109I GCAGC 1 cut(s) 775
MaeI CTAG 4 cut(s) 336, 444, 564, 899
MaeII ACGT 3 cut(s) 14, 345, 766
MaeIII GTNAC 2 cut(s) 824, 1091
MalI GATC 2 cut(s) 883, 1006
MboI GATC 2 cut(s) 881, 1004
MboII GAAGA 4 cut(s) 713, 834, 903, 972
MfeI CAATTG 1 cut(s) 888
MhlI GDGCHC 3 cut(s) 475, 742, 995
MlsI TGGCCA 2 cut(s) 600, 1053
MluNI TGGCCA 2 cut(s) 600, 1053
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 2 cut(s) 415, 953
MmeI TCCRAC 3 cut(s) 383, 554, 581
MnlI CCTC 7 cut(s) 53, 56, 298, 333, 564, 571, 661
Mox20I TGGCCA 2 cut(s) 600, 1053
MroXI GAANNNNTTC 1 cut(s) 979
MscI TGGCCA 2 cut(s) 600, 1053
MseI TTAA 2 cut(s) 939, 1123
MslI CAYNNNNRTG 2 cut(s) 854, 1047
Msp20I TGGCCA 2 cut(s) 600, 1053
MspA1I CMGCKG 2 cut(s) 193, 458
MspI CCGG 3 cut(s) 113, 416, 734
MspR9I CCNGG 5 cut(s) 114, 381, 597, 734, 735
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 2 cut(s) 381, 597
MvnI CGCG 1 cut(s) 730
MwoI GCNNNNNNNGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 3 cut(s) 114, 734, 735
NdeII GATC 2 cut(s) 881, 1004
NheI GCTAGC 1 cut(s) 898
NlaIII CATG 3 cut(s) 657, 777, 795
NlaIV GGNNCC 5 cut(s) 28, 75, 390, 649, 949
NmuCI GTSAC 1 cut(s) 1091
NspI RCATGY 2 cut(s) 777, 795
PaeI GCATGC 2 cut(s) 777, 795
PdmI GAANNNNTTC 1 cut(s) 979
PfeI GAWTC 2 cut(s) 373, 522
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 3 cut(s) 73, 790, 930
PleI GAGTC 2 cut(s) 414, 953
PluTI GGCGCC 1 cut(s) 30
PpsI GAGTC 2 cut(s) 414, 953
PpuMI RGGWCCY 1 cut(s) 648
Psp5II RGGWCCY 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 379, 595
PspGI CCWGG 2 cut(s) 379, 595
PspN4I GGNNCC 5 cut(s) 28, 75, 390, 649, 949
PspPI GGNCC 5 cut(s) 73, 362, 551, 648, 1076
PspPPI RGGWCCY 1 cut(s) 648
PstNI CAGNNNCTG 2 cut(s) 509, 968
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 4 cut(s) 448, 537, 895, 1102
RsaNI GTAC 4 cut(s) 447, 536, 894, 1101
RseI CAYNNNNRTG 2 cut(s) 854, 1047
SaqAI TTAA 2 cut(s) 939, 1123
SatI GCNGC 3 cut(s) 72, 789, 929
Sau3AI GATC 2 cut(s) 881, 1004
Sau96I GGNCC 5 cut(s) 73, 362, 551, 648, 1076
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 2 cut(s) 415, 953
ScrFI CCNGG 5 cut(s) 114, 381, 597, 734, 735
SduI GDGCHC 3 cut(s) 475, 742, 995
SfoI GGCGCC 1 cut(s) 28
SinI GGWCC 3 cut(s) 362, 551, 648
SmaI CCCGGG 1 cut(s) 735
SmiMI CAYNNNNRTG 2 cut(s) 854, 1047
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SphI GCATGC 2 cut(s) 777, 795
SsiI CCGC 3 cut(s) 71, 456, 928
SspDI GGCGCC 1 cut(s) 26
SspMI CTAG 4 cut(s) 336, 444, 564, 899
StyD4I CCNGG 5 cut(s) 112, 379, 595, 732, 733
TaaI ACNGT 9 cut(s) 153, 268, 307, 535, 830, 997, 1021, 1059, 1100
TaiI ACGT 3 cut(s) 17, 348, 769
TatI WGTACW 2 cut(s) 446, 1100
TauI GCSGC 2 cut(s) 74, 931
TfiI GAWTC 2 cut(s) 373, 522
Tru1I TTAA 2 cut(s) 939, 1123
Tru9I TTAA 2 cut(s) 939, 1123
TscAI CASTG 5 cut(s) 158, 882, 993, 1000, 1096
TseFI GTSAC 1 cut(s) 1091
TseI GCWGC 1 cut(s) 788
Tsp45I GTSAC 1 cut(s) 1091
TspDTI ATGAA 2 cut(s) 903, 972
TspGWI ACGGA 2 cut(s) 271, 714
TspMI CCCGGG 1 cut(s) 733
TspRI CASTG 5 cut(s) 158, 882, 993, 1000, 1096
Van91I CCANNNNNTGG 1 cut(s) 811
VneI GTGCAC 1 cut(s) 738
VpaK11BI GGWCC 3 cut(s) 362, 551, 648
XagI CCTNNNNNAGG 1 cut(s) 396
XapI RAATTY 5 cut(s) 20, 176, 641, 779, 797
XceI RCATGY 2 cut(s) 777, 795
XmaI CCCGGG 1 cut(s) 733
XmnI GAANNNNTTC 1 cut(s) 979
XspI CTAG 4 cut(s) 336, 444, 564, 899
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.