Rorug04G0173000

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006831
Physical Location & Seq
Forward (+)
30492474 .. 30495011
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0173000.1

Sequence Viewer

Length: 1416 bp
ATGAAGCTGGATTTGGAAGAACAAATGGGTGCTGGTGCTGCTCAGAGCCACATTCTTGTGTTTCCTTTTCCGGTTCAAGGTCACATGAACCCGATGGTTCAATTCGCCAAGCGGCTAGTCTCTAAAGGCCAAAGGGTCACTATAGTCACCACCTTCTCAGCTAGCAAATCCGTACCAACACTCAATCCCACCTCGTTCGGGTCCAACCTCAAAATGGAGTTCATCTCAGATGGCTCCGAACAAGTTAAGGATTCCGAAACTATTGAGGAGTCTATTGAGCGTTTCCGAATCTCAACCGCGAAGTCCTTAACCAACCTCATGATGAAGATCAGGAACAGCAGCGATGCGTCGCAATACCCTCTCAAGTTCGTGGTGTACCACTCGGGCATGCCGTGGGTTTTAGATGTGGCACGGCGACAAGGCATAGATGGAGCTCCATTTTTCACAACTTCATGTGCAGTTGCAACTCTCTTTCACCATGTCCATCAAGGAACACTACAGCTACCCTTAGAAGGTCCTAGGGCAATAATGCCGTCTATGCCACCATTAGAGCTCAACGATCTACCGACGTTTCTCTCCGATGTCGAGTCATACCCAGCTTTCCTTAAGCTTGCCATGAATCAATACTCCAATTTGAAGCAAGTAAACTGCATCTTCTATAGCAGTTTTGATAAGTTGGAAAAAGAGGTACTAAAATGGATGGAGAGCCAAGACTGGCCGGTCAAGATGATAGGACCAACAATTCCATCAGTTTTCTTGGACAAGCGGTTGGAGGATGACAAAGACTATGGTCTTAGCCTTTTCAAGCCAAATGTGGAGACTTGCATGCAATGGCTGGACTCCAAGAAACCTGGCTCAGTCGTCTATGCATCATTTGGAAGCTTGGCCGACCTAAGCATAGAGCAAACTGCGGAACTCGCATGGGGCCTTAAGAATAGCAGTTTCAACTTCCTGTGGGTAGTCCGAGAAACGGAAAAGGATAAACTCCCTAAGAATTTTGTAGAGGAGATATCAGGGAAGGGTCTGGTAGTGAGTTGGTGCCCACAGCTACAAGTCTTGGCTCACAAGGCAGTGGGATGTTTCCTCACTCACTGTGGATGGAATTCGACTCTCGAAGCATTGAGCTTGGGAGTACCGATGGTGGTATTGCCACATTGGGCTGATCAACCGACGAATGCAAAGTTTGTGGCGGATGTGTGGAAAGTCGGAGTTAGGGTGAATGTGAATAAGAAATCTGGTCTTGCAACAAAAGAAGAAATAGCTGTGTGTATTAAGAAGGTCATGGACAAGGAAAAGGGGATGAAGTTTAAAAAGGCTTCGTTGATTTGGAAGGAATTGGCTAAAGAGGCTGTGGATGAAGGGGGAAGCTCTGATAAGAACATCGAAGAATTTGTGGCAAAAGTTCTATTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

471

Amino Acids

52.63

Weight (kDa)

7.11

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 18 - 431 3.8e-29 UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C PF06722 343 - 430 2.7e-06 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 1038
AccII CGCG 1 cut(s) 299
AciI CCGC 5 cut(s) 112, 297, 766, 911, 1190
AcoI YGGCCR 2 cut(s) 716, 885
AcsI RAATTY 3 cut(s) 994, 1102, 1388
AfaI GTAC 4 cut(s) 174, 377, 690, 1134
AfiI CCNNNNNNNGG 5 cut(s) 77, 198, 214, 512, 970
AflII CTTAAG 2 cut(s) 605, 929
AgsI TTSAA 5 cut(s) 77, 101, 637, 805, 946
AjnI CCWGG 1 cut(s) 850
AjuI GAANNNNNNNTTGG 1 cut(s) 28
Alw21I GWGCWC 2 cut(s) 436, 555
Alw26I GTCTC 2 cut(s) 124, 812
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 4 cut(s) 127, 716, 885, 925
ApeKI GCWGC 2 cut(s) 38, 339
ApoI RAATTY 3 cut(s) 994, 1102, 1388
AspA2I CCTAGG 1 cut(s) 518
AspS9I GGNCC 4 cut(s) 201, 515, 734, 925
AsuHPI GGTGA 3 cut(s) 139, 467, 1228
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 3 cut(s) 201, 515, 734
AvrII CCTAGG 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 1043
BanI GGYRCC 1 cut(s) 1038
BanII GRGCYC 2 cut(s) 436, 555
Bbv12I GWGCWC 2 cut(s) 436, 555
BbvI GCAGC 2 cut(s) 25, 351
BccI CCATC 8 cut(s) 88, 224, 422, 492, 694, 754, 1092, 1132
BceAI ACGGC 3 cut(s) 376, 428, 517
BciT130I CCWGG 1 cut(s) 852
BclI TGATCA 1 cut(s) 1162
BcoDI GTCTC 2 cut(s) 124, 812
BfaI CTAG 3 cut(s) 116, 162, 519
BfmI CTRYAG 3 cut(s) 141, 497, 658
BfrI CTTAAG 2 cut(s) 605, 929
BisI GCNGC 3 cut(s) 39, 113, 340
BlnI CCTAGG 1 cut(s) 518
BlsI GCNGC 3 cut(s) 40, 114, 341
Bme1390I CCNGG 1 cut(s) 852
Bme18I GGWCC 3 cut(s) 201, 515, 734
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 4 cut(s) 201, 515, 734, 925
BmiI GGNNCC 4 cut(s) 202, 235, 926, 1040
BmrFI CCNGG 1 cut(s) 852
BmsI GCATC 3 cut(s) 334, 660, 878
BmtI GCTAGC 1 cut(s) 165
BoxI GACNNNNGTC 1 cut(s) 789
BplI GAGNNNNNCTC 2 cut(s) 209, 241
Bpu10I CCTNAGC 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 392, 518
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 1200, 1230
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 198, 214, 512, 970
Bse118I RCCGGY 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 719
Bse3DI GCAATG 1 cut(s) 836
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 2 cut(s) 392, 518
BseGI GGATG 7 cut(s) 705, 781, 1082, 1103, 1198, 1305, 1360
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 5 cut(s) 77, 198, 214, 512, 970
BseMI GCAATG 1 cut(s) 836
BseMII CTCAG 4 cut(s) 56, 171, 240, 870
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 2 cut(s) 281, 1019
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 2 cut(s) 25, 351
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 4 cut(s) 129, 718, 887, 927
BshNI GGYRCC 1 cut(s) 1038
BsiHKAI GWGCWC 2 cut(s) 436, 555
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 71, 719
BslI CCNNNNNNNGG 5 cut(s) 77, 198, 214, 512, 970
BsmAI GTCTC 2 cut(s) 124, 812
BsmI GAATGC 1 cut(s) 1180
BsnI GGCC 4 cut(s) 129, 718, 887, 927
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 3 cut(s) 436, 555, 1043
Bsp143I GATC 4 cut(s) 327, 559, 1162, 1410
BspACI CCGC 5 cut(s) 112, 297, 766, 911, 1190
BspANI GGCC 4 cut(s) 129, 718, 887, 927
BspCNI CTCAG 4 cut(s) 55, 170, 239, 869
BspFNI CGCG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 4 cut(s) 202, 235, 926, 1040
BspOI GCTAGC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 1038
BspTI CTTAAG 2 cut(s) 605, 929
BsrDI GCAATG 1 cut(s) 836
BsrFI RCCGGY 1 cut(s) 718
BsrI ACTGG 1 cut(s) 719
BssAI RCCGGY 1 cut(s) 718
BssECI CCNNGG 2 cut(s) 392, 518
BssMI GATC 4 cut(s) 327, 559, 1162, 1410
BssT1I CCWWGG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 1 cut(s) 1094
BstAFI CTTAAG 2 cut(s) 605, 929
BstC8I GCNNGC 4 cut(s) 163, 389, 612, 827
BstDEI CTNAG 8 cut(s) 42, 157, 226, 508, 794, 856, 893, 990
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 7 cut(s) 705, 781, 1082, 1103, 1198, 1305, 1360
BstFNI CGCG 1 cut(s) 299
BstKTI GATC 4 cut(s) 330, 562, 1165, 1413
BstMAI GTCTC 2 cut(s) 124, 812
BstMBI GATC 4 cut(s) 327, 559, 1162, 1410
BstMWI GCNNNNNNNGC 5 cut(s) 38, 538, 917, 1067, 1346
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 2 cut(s) 391, 829
BstPAI GACNNNNGTC 1 cut(s) 789
BstSCI CCNGG 1 cut(s) 850
BstSFI CTRYAG 3 cut(s) 141, 497, 658
BstSLI GKGCMC 1 cut(s) 1043
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 2 cut(s) 25, 351
BsuRI GGCC 4 cut(s) 129, 718, 887, 927
BtgI CCRYGG 1 cut(s) 392
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 7 cut(s) 705, 781, 1082, 1103, 1198, 1305, 1360
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 2 cut(s) 1077, 1090
Cac8I GCNNGC 4 cut(s) 163, 389, 612, 827
CciI TCATGA 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 4 cut(s) 201, 515, 734, 925
CseI GACGC 1 cut(s) 336
Csp6I GTAC 4 cut(s) 173, 376, 689, 1133
CspCI CAANNNNNGTGG 2 cut(s) 1167, 1202
CviAII CATG 9 cut(s) 85, 319, 388, 453, 479, 616, 826, 921, 1282
CviQI GTAC 4 cut(s) 173, 376, 689, 1133
DdeI CTNAG 8 cut(s) 42, 157, 226, 508, 794, 856, 893, 990
DpnI GATC 4 cut(s) 329, 561, 1164, 1412
DpnII GATC 4 cut(s) 327, 559, 1162, 1410
DraI TTTAAA 1 cut(s) 1309
DrdI GACNNNNNNGTC 1 cut(s) 719
DseDI GACNNNNNNGTC 1 cut(s) 719
EaeI YGGCCR 2 cut(s) 716, 885
EciI GGCGGA 1 cut(s) 1205
Ecl136II GAGCTC 2 cut(s) 434, 553
Eco130I CCWWGG 1 cut(s) 518
Eco24I GRGCYC 2 cut(s) 436, 555
Eco32I GATATC 1 cut(s) 1011
Eco47I GGWCC 3 cut(s) 201, 515, 734
Eco53kI GAGCTC 2 cut(s) 434, 553
Eco88I CYCGRG 1 cut(s) 382
EcoICRI GAGCTC 2 cut(s) 434, 553
EcoO109I RGGNCCY 2 cut(s) 515, 925
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 1 cut(s) 1011
EcoT14I CCWWGG 1 cut(s) 518
EcoT22I ATGCAT 1 cut(s) 871
EcoT38I GRGCYC 2 cut(s) 436, 555
ErhI CCWWGG 1 cut(s) 518
FaeI CATG 9 cut(s) 88, 322, 391, 456, 482, 619, 829, 924, 1285
FatI CATG 9 cut(s) 84, 318, 387, 452, 478, 615, 825, 920, 1281
FbaI TGATCA 1 cut(s) 1162
Fnu4HI GCNGC 3 cut(s) 39, 113, 340
FokI GGATG 7 cut(s) 712, 788, 1089, 1110, 1205, 1312, 1367
FriOI GRGCYC 2 cut(s) 436, 555
Fsp4HI GCNGC 3 cut(s) 39, 113, 340
FspBI CTAG 3 cut(s) 116, 162, 519
GluI GCNGC 3 cut(s) 39, 113, 340
GsaI CCCAGC 1 cut(s) 599
HaeIII GGCC 4 cut(s) 129, 718, 887, 927
HapII CCGG 2 cut(s) 71, 719
HgaI GACGC 1 cut(s) 336
Hin1II CATG 9 cut(s) 88, 322, 391, 456, 482, 619, 829, 924, 1285
HindIII AAGCTT 2 cut(s) 608, 880
HinfI GANTC 7 cut(s) 251, 269, 288, 587, 619, 839, 1108
HpaII CCGG 2 cut(s) 71, 719
HphI GGTGA 3 cut(s) 139, 467, 1228
Hpy166II GTNNAC 2 cut(s) 376, 646
Hpy188III TCNNGA 4 cut(s) 319, 331, 724, 1112
Hpy8I GTNNAC 2 cut(s) 376, 646
Hpy99I CGWCG 3 cut(s) 352, 571, 1174
HpyAV CCTTC 6 cut(s) 163, 506, 1012, 1270, 1324, 1352
HpyCH4III ACNGT 1 cut(s) 1094
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 8 cut(s) 458, 464, 651, 825, 829, 869, 1178, 1244
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 538, 917, 1067, 1346
HpyF3I CTNAG 8 cut(s) 42, 157, 226, 508, 794, 856, 893, 990
HpySE526I ACGT 1 cut(s) 569
Hsp92II CATG 9 cut(s) 88, 322, 391, 456, 482, 619, 829, 924, 1285
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 4 cut(s) 327, 559, 1162, 1410
LmnI GCTCC 3 cut(s) 239, 431, 439
Lsp1109I GCAGC 2 cut(s) 25, 351
LweI GCATC 3 cut(s) 334, 660, 878
MaeI CTAG 3 cut(s) 116, 162, 519
MaeII ACGT 1 cut(s) 569
MaeIII GTNAC 3 cut(s) 80, 136, 145
MalI GATC 4 cut(s) 329, 561, 1164, 1412
MboI GATC 4 cut(s) 327, 559, 1162, 1410
MboII GAAGA 5 cut(s) 29, 337, 646, 1265, 1397
MhlI GDGCHC 3 cut(s) 436, 555, 1043
MluCI AATT 7 cut(s) 101, 631, 741, 994, 1102, 1334, 1388
MlyI GAGTC 4 cut(s) 278, 596, 833, 1102
MmeI TCCRAC 4 cut(s) 228, 657, 750, 1186
Mph1103I ATGCAT 1 cut(s) 871
MseI TTAA 6 cut(s) 246, 308, 606, 930, 1272, 1308
MslI CAYNNNNRTG 1 cut(s) 56
MspCI CTTAAG 2 cut(s) 605, 929
MspI CCGG 2 cut(s) 71, 719
MspR9I CCNGG 1 cut(s) 852
Mva1269I GAATGC 1 cut(s) 1180
MvaI CCWGG 1 cut(s) 852
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 5 cut(s) 38, 538, 917, 1067, 1346
NdeII GATC 4 cut(s) 327, 559, 1162, 1410
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 9 cut(s) 88, 322, 391, 456, 482, 619, 829, 924, 1285
NlaIV GGNNCC 4 cut(s) 202, 235, 926, 1040
NmuCI GTSAC 3 cut(s) 80, 136, 145
NsiI ATGCAT 1 cut(s) 871
NspI RCATGY 2 cut(s) 391, 829
PaeI GCATGC 2 cut(s) 391, 829
PagI TCATGA 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PctI GAATGC 1 cut(s) 1180
PfeI GAWTC 3 cut(s) 251, 288, 619
PkrI GCNGC 3 cut(s) 40, 114, 341
PleI GAGTC 4 cut(s) 277, 595, 833, 1102
PpsI GAGTC 4 cut(s) 277, 595, 833, 1102
PpuMI RGGWCCY 1 cut(s) 515
PshAI GACNNNNGTC 1 cut(s) 789
Psp124BI GAGCTC 2 cut(s) 436, 555
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 850
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 4 cut(s) 202, 235, 926, 1040
PspPI GGNCC 4 cut(s) 201, 515, 734, 925
PspPPI RGGWCCY 1 cut(s) 515
RsaI GTAC 4 cut(s) 174, 377, 690, 1134
RsaNI GTAC 4 cut(s) 173, 376, 689, 1133
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 2 cut(s) 436, 555
SaqAI TTAA 6 cut(s) 246, 308, 606, 930, 1272, 1308
SatI GCNGC 3 cut(s) 39, 113, 340
Sau3AI GATC 4 cut(s) 327, 559, 1162, 1410
Sau96I GGNCC 4 cut(s) 201, 515, 734, 925
SchI GAGTC 4 cut(s) 278, 596, 833, 1102
ScrFI CCNGG 1 cut(s) 852
SduI GDGCHC 3 cut(s) 436, 555, 1043
SfaNI GCATC 3 cut(s) 334, 660, 878
SfcI CTRYAG 3 cut(s) 141, 497, 658
SinI GGWCC 3 cut(s) 201, 515, 734
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 3 cut(s) 362, 605, 929
SmoI CTYRAG 3 cut(s) 362, 605, 929
SphI GCATGC 2 cut(s) 391, 829
Sse9I AATT 7 cut(s) 101, 631, 741, 994, 1102, 1334, 1388
SsiI CCGC 5 cut(s) 112, 297, 766, 911, 1190
SspMI CTAG 3 cut(s) 116, 162, 519
SstI GAGCTC 2 cut(s) 436, 555
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 1 cut(s) 518
TaaI ACNGT 1 cut(s) 1094
TaiI ACGT 1 cut(s) 572
TaqI TCGA 4 cut(s) 585, 1106, 1113, 1383
TasI AATT 7 cut(s) 101, 631, 741, 994, 1102, 1334, 1388
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 3 cut(s) 251, 288, 619
Tru1I TTAA 6 cut(s) 246, 308, 606, 930, 1272, 1308
Tru9I TTAA 6 cut(s) 246, 308, 606, 930, 1272, 1308
TscAI CASTG 2 cut(s) 1077, 1097
TseFI GTSAC 3 cut(s) 80, 136, 145
TseI GCWGC 2 cut(s) 38, 339
Tsp45I GTSAC 3 cut(s) 80, 136, 145
TspDTI ATGAA 8 cut(s) 17, 101, 211, 338, 441, 632, 1316, 1371
TspGWI ACGGA 2 cut(s) 160, 986
TspRI CASTG 2 cut(s) 1077, 1097
Vha464I CTTAAG 2 cut(s) 605, 929
VpaK11BI GGWCC 3 cut(s) 201, 515, 734
XapI RAATTY 3 cut(s) 994, 1102, 1388
XceI RCATGY 2 cut(s) 391, 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmaJI CCTAGG 1 cut(s) 518
XspI CTAG 3 cut(s) 116, 162, 519
Zsp2I ATGCAT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.