Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8301593.1

Orthogroup ID

OG0006831

Physical Location & Seq

Genomic Coordinates Reverse (-)

156 .. 782

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8301593.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggttgcaaggcctcctttgctacctagctcatacgttcaaagcccctatggtccgatgctgattccccctggaatggttcctttctcaggttggagtccatatccggctggtgcaagcccattagcgtctcctagtactcaaactgctgttggttcaggggcactttatgggataaatcaactatctccttcagcgcctgcatatacaggaatctttccaactgtacctttttctcttggtcctccaacctctagccagaaggagcaatctcatcctgaaagacctggccaatcagaatgtcagtattacctgagaacaggggattgtaaatttgggtcctcatgtagatatcatcatccagcagaagttgttgcaccaaatacacctgttgtccttagctccattggtcttccgtcgcgcccggtgagccgctctttcaactcctctgcatcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

152

Amino Acids

15.92

Weight (kDa)

8.88

Isoelectric Point (pI)

80.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06410 AT5G18550 AT5G18550 AT5G18550 AT5G18550
fragaria_vesca	FvH4_4g17640
malus_domestica	MD13G1171100.v1.1 MD16G1172700.v1.1
prunus_persica	Prupe.1G139500_v2.0.a1
pyrus_communis	pycom13g14660 pycom16g14480
rosa_chinensis	RchiOBHm_Chr4g0421561
rosa_laevigata	RLG00000007667
rosa_multiflora	Rmu_co8141282.1_g000001 Rmu_co8301593.1_g000001 Rmu_sc0010734.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363810
rosa_rugosa	Rorug04G0172800 Rorug04G0172900 Rorug04G0173000
rosa_samantha	Rh3AG118900 Rh4AG233200 Rh4BG235900 Rh4CG247500 Rh4DG231800
rosa_wichuraiana	Rw4G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	435
AccII	CGCG	1 cut(s)	421
AciI	CCGC	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	139, 228
AfiI	CCNNNNNNNGG	2 cut(s)	76, 89
AgsI	TTSAA	2 cut(s)	41, 442
AjnI	CCWGG	2 cut(s)	70, 286
AluBI	AGCT	2 cut(s)	30, 402
AluI	AGCT	2 cut(s)	30, 402
Alw26I	GTCTC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	11, 289
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	199, 423
AspS9I	GGNCC	3 cut(s)	53, 242, 339
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	439
AvaII	GGWCC	3 cut(s)	53, 242, 339
BaeGI	GKGCMC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	72, 288
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	3 cut(s)	27, 135, 255
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	3 cut(s)	72, 288, 425
Bme18I	GGWCC	3 cut(s)	53, 242, 339
BmgT120I	GGNCC	3 cut(s)	53, 242, 339
BmiI	GGNNCC	2 cut(s)	81, 340
BmrFI	CCNGG	3 cut(s)	72, 288, 425
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 89
BseBI	CCWGG	2 cut(s)	72, 288
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	274, 358
BseLI	CCNNNNNNNGG	2 cut(s)	76, 89
BseMII	CTCAG	2 cut(s)	102, 305
BseRI	GAGGAG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	13, 291
BsiSI	CCGG	2 cut(s)	107, 425
BslI	CCNNNNNNNGG	2 cut(s)	76, 89
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	13, 291
Bsp1286I	GDGCHC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	2 cut(s)	13, 291
BspCNI	CTCAG	2 cut(s)	101, 306
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	81, 340
BsrBI	CCGCTC	1 cut(s)	435
BssECI	CCNNGG	1 cut(s)	70
Bst2UI	CCWGG	2 cut(s)	72, 288
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	118, 201
BstDEI	CTNAG	3 cut(s)	88, 314, 398
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	274, 358
BstFNI	CGCG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	199, 423
BstMAI	GTCTC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 429
BstNI	CCWGG	2 cut(s)	72, 288
BstSCI	CCNGG	3 cut(s)	70, 286, 423
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	13, 291
BtsCI	GGATG	2 cut(s)	274, 358
Cac8I	GCNNGC	2 cut(s)	118, 201
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	2 cut(s)	199, 423
Cfr13I	GGNCC	3 cut(s)	53, 242, 339
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	138, 227
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	9 cut(s)	13, 30, 45, 110, 120, 258, 291, 402, 432
CviKI_1	RGCY	9 cut(s)	13, 30, 45, 110, 120, 258, 291, 402, 432
CviQI	GTAC	2 cut(s)	138, 227
DdeI	CTNAG	3 cut(s)	88, 314, 398
EaeI	YGGCCR	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	353
Eco47I	GGWCC	3 cut(s)	53, 242, 339
Eco57I	CTGAAG	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	70, 286
EcoRV	GATATC	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	348
FaiI	YATR	7 cut(s)	34, 51, 103, 171, 205, 207, 346
FalI	AAGNNNNNCTT	1 cut(s)	33
FatI	CATG	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	2 cut(s)	261, 345
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	3 cut(s)	27, 135, 255
GlaI	GCGC	2 cut(s)	198, 422
GluI	GCNGC	1 cut(s)	433
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	13, 291
HapII	CCGG	2 cut(s)	107, 425
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	2 cut(s)	199, 423
Hin1II	CATG	1 cut(s)	348
Hin6I	GCGC	2 cut(s)	197, 421
HinP1I	GCGC	2 cut(s)	197, 421
HinfI	GANTC	3 cut(s)	64, 97, 213
HpaII	CCGG	2 cut(s)	107, 425
HphI	GGTGA	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	57, 298
Hpy188III	TCNNGA	2 cut(s)	278, 456
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	201, 256
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	8, 116, 203, 377, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 429
HpyF3I	CTNAG	3 cut(s)	88, 314, 398
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	348
HspAI	GCGC	2 cut(s)	197, 421
LmnI	GCTCC	2 cut(s)	265, 407
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	27, 135, 255
MaeII	ACGT	1 cut(s)	36
MbiI	CCGCTC	1 cut(s)	435
MboII	GAAGA	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	1 cut(s)	332
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	3 cut(s)	74, 245, 272
MnlI	CCTC	5 cut(s)	24, 255, 262, 352, 457
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	2 cut(s)	107, 425
MspR9I	CCNGG	3 cut(s)	72, 288, 425
MvaI	CCWGG	2 cut(s)	72, 288
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	2 cut(s)	19, 429
NciI	CCSGG	1 cut(s)	425
NlaIII	CATG	1 cut(s)	348
NlaIV	GGNNCC	2 cut(s)	81, 340
PceI	AGGCCT	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	64, 213
PkrI	GCNGC	1 cut(s)	434
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	70, 286
PspGI	CCWGG	2 cut(s)	70, 286
PspN4I	GGNNCC	2 cut(s)	81, 340
PspPI	GGNCC	3 cut(s)	53, 242, 339
PspPPI	RGGWCCY	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	200
RsaI	GTAC	2 cut(s)	139, 228
RsaNI	GTAC	2 cut(s)	138, 227
SatI	GCNGC	1 cut(s)	433
Sau96I	GGNCC	3 cut(s)	53, 242, 339
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	72, 288, 425
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	48
SinI	GGWCC	3 cut(s)	53, 242, 339
Sse9I	AATT	1 cut(s)	332
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	3 cut(s)	27, 135, 255
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	3 cut(s)	70, 286, 423
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	39
TasI	AATT	1 cut(s)	332
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	64, 213
TspGWI	ACGGA	1 cut(s)	405
VpaK11BI	GGWCC	3 cut(s)	53, 242, 339
XagI	CCTNNNNNAGG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	332
XspI	CTAG	3 cut(s)	27, 135, 255
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.