Rorug04G0172800

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006831
Physical Location & Seq
Forward (+)
30399308 .. 30401884
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0172800.1

Sequence Viewer

Length: 966 bp
ATGAAGACCTCTCCGTTGGTTTCCGCGGCGGTGGTGGCGGTGGTTCTGCTCAGTGTACTATGCGTGAATGCCTTCGACGACCAGGTGTCGGCGACCCCGACGCTGGTCAAGAAGGTCAAAGGAAAGAAGGTGTGCGACAAAGGGTGGGAGTGTAAGGGGTGGTCACAGTACTGTTGCAATCTCACCATTACCGATGTCTTCCAGACCTACCAATTCGAGGAGCTCTTCAAAAACCGGAACTCGCCGGTGGCTCACGCCGTTGGATTCTGGGACTTCCAGTCCTTCATTCTCGCCGCCGCGCTTTTCGAGCCACAAGGGTTTTGCACCACCGGCGGGAAGCTTATGCAGATGAAGGAGCTCGCCGCTTTTCTCGGACATGTCGGCAGCAAGACCTCTTGTGGTTACGGTGTGGCCACCGGAGGACCATTGGCATGGGGACTTTGCTATAACAGGGAAATGAGTCCCATGCAGTCATACTGTGATGACTTCTACAAATACACATATCCCTGCTCTCCTGGAGCTGACTACTACGGTCGTGGTGCTTTGCCTATCTACTGGAACTACAATTACGGTGCAGCTGGGGAAGCATTGAAGGTTGATCTGTTGAACCATCCAGAATACATTGAGCAGAATGCTACTCTTGCCTTCCAGGCTGCAATATGGAGGTGGATGACTCCTATCAAGAAATCGCAACCCTCAGCCCACGAAGCATTCGTTGGCACTTGGAAGCCTACCAAGAATGACACATTGTCCAAGCGATTTCCTGGATTTGGCGCAACAATGAATATTCTATATGGGGAGCAAGTTTGTGGCCAGGGCGACATTGACGCCATGAACAACATCGTTTCCCATTACCAGTATTACCTCGACCTTTTGGGTGTTGGTCGTGAGGAAGCAGGTCCCCATGACGTGCTAACTTGTGCTGAGCAGCTTGCATTTAATCCAATTACCAAAGCATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

321

Amino Acids

35.45

Weight (kDa)

6.3

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 70 - 297 2.1e-60 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 887
AccII CGCG 2 cut(s) 26, 299
AciI CCGC 8 cut(s) 24, 26, 29, 38, 294, 297, 333, 363
AcoI YGGCCR 2 cut(s) 411, 811
AcyI GRCGYC 1 cut(s) 828
AfaI GTAC 2 cut(s) 57, 170
AfiI CCNNNNNNNGG 5 cut(s) 88, 103, 217, 333, 770
AflIII ACRYGT 1 cut(s) 376
AgsI TTSAA 3 cut(s) 229, 592, 607
AhdI GACNNNNNGTC 3 cut(s) 85, 277, 748
AjiI CACGTC 1 cut(s) 910
AjnI CCWGG 5 cut(s) 81, 514, 648, 763, 813
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AluBI AGCT 6 cut(s) 223, 340, 358, 521, 578, 931
AluI AGCT 6 cut(s) 223, 340, 358, 521, 578, 931
Alw21I GWGCWC 2 cut(s) 225, 360
AoxI GGCC 2 cut(s) 411, 811
ApeKI GCWGC 4 cut(s) 384, 575, 653, 928
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 2 cut(s) 301, 776
AspS9I GGNCC 2 cut(s) 422, 899
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 2 cut(s) 422, 899
BalI TGGCCA 2 cut(s) 413, 813
BanII GRGCYC 2 cut(s) 225, 360
BbsI GAAGAC 2 cut(s) 11, 190
Bbv12I GWGCWC 2 cut(s) 225, 360
BbvCI CCTCAGC 1 cut(s) 697
BbvI GCAGC 4 cut(s) 396, 587, 640, 940
BccI CCATC 1 cut(s) 618
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 5 cut(s) 83, 516, 650, 765, 815
BfuAI ACCTGC 1 cut(s) 887
BglI GCCNNNNNGGC 1 cut(s) 650
BisI GCNGC 8 cut(s) 27, 294, 297, 363, 385, 576, 654, 929
BlpI GCTNAGC 1 cut(s) 924
BlsI GCNGC 8 cut(s) 28, 295, 298, 364, 386, 577, 655, 930
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 5 cut(s) 83, 516, 650, 765, 815
Bme18I GGWCC 2 cut(s) 422, 899
BmeRI GACNNNNNGTC 3 cut(s) 85, 277, 748
BmgBI CACGTC 1 cut(s) 910
BmgT120I GGNCC 2 cut(s) 422, 899
BmiI GGNNCC 1 cut(s) 901
BmrFI CCNGG 5 cut(s) 83, 516, 650, 765, 815
BoxI GACNNNNGTC 1 cut(s) 104
BpiI GAAGAC 2 cut(s) 11, 190
BpmI CTGGAG 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 697
Bpu1102I GCTNAGC 1 cut(s) 924
BsaHI GRCGYC 1 cut(s) 828
BsaJI CCNNGG 2 cut(s) 24, 814
BsaWI WCCGGW 2 cut(s) 234, 416
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 103, 217, 333, 770
Bse118I RCCGGY 2 cut(s) 244, 329
Bse1I ACTGG 3 cut(s) 277, 560, 856
BseBI CCWGG 5 cut(s) 83, 516, 650, 765, 815
BseDI CCNNGG 2 cut(s) 24, 814
BseGI GGATG 2 cut(s) 610, 675
BseLI CCNNNNNNNGG 5 cut(s) 88, 103, 217, 333, 770
BseMII CTCAG 3 cut(s) 64, 711, 915
BseNI ACTGG 3 cut(s) 277, 560, 856
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 4 cut(s) 396, 587, 640, 940
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 2 cut(s) 26, 299
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 2 cut(s) 413, 813
BsiEI CGRYCG 1 cut(s) 535
BsiHKAI GWGCWC 2 cut(s) 225, 360
BsiSI CCGG 4 cut(s) 235, 245, 330, 417
BslFI GGGAC 4 cut(s) 284, 447, 450, 885
BslI CCNNNNNNNGG 5 cut(s) 88, 103, 217, 333, 770
BsmFI GGGAC 4 cut(s) 284, 447, 450, 885
BsmI GAATGC 3 cut(s) 73, 637, 710
BsnI GGCC 2 cut(s) 413, 813
Bsp1286I GDGCHC 2 cut(s) 225, 360
Bsp143I GATC 1 cut(s) 598
Bsp1720I GCTNAGC 1 cut(s) 924
BspACI CCGC 8 cut(s) 24, 26, 29, 38, 294, 297, 333, 363
BspANI GGCC 2 cut(s) 413, 813
BspCNI CTCAG 3 cut(s) 63, 710, 916
BspFNI CGCG 2 cut(s) 26, 299
BspLI GGNNCC 1 cut(s) 901
BspMI ACCTGC 1 cut(s) 887
BspQI GCTCTTC 1 cut(s) 230
BsrFI RCCGGY 2 cut(s) 244, 329
BsrI ACTGG 3 cut(s) 277, 560, 856
BssAI RCCGGY 2 cut(s) 244, 329
BssECI CCNNGG 2 cut(s) 24, 814
BssMI GATC 1 cut(s) 598
BssNI GRCGYC 1 cut(s) 828
Bst2UI CCWGG 5 cut(s) 83, 516, 650, 765, 815
Bst4CI ACNGT 6 cut(s) 168, 173, 407, 479, 533, 572
Bst6I CTCTTC 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 828
BstC8I GCNNGC 2 cut(s) 360, 933
BstDEI CTNAG 3 cut(s) 50, 697, 924
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 610, 675
BstFNI CGCG 2 cut(s) 26, 299
BstHHI GCGC 2 cut(s) 301, 776
BstKTI GATC 1 cut(s) 601
BstMBI GATC 1 cut(s) 598
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 7 cut(s) 35, 307, 330, 584, 641, 650, 707
BstNI CCWGG 5 cut(s) 83, 516, 650, 765, 815
BstNSI RCATGY 1 cut(s) 380
BstPAI GACNNNNGTC 1 cut(s) 104
BstSCI CCNGG 5 cut(s) 81, 514, 648, 763, 813
BstUI CGCG 2 cut(s) 26, 299
BstV1I GCAGC 4 cut(s) 396, 587, 640, 940
BstV2I GAAGAC 2 cut(s) 11, 190
BstXI CCANNNNNNTGG 1 cut(s) 432
BsuRI GGCC 2 cut(s) 413, 813
BtgI CCRYGG 1 cut(s) 24
BtrI CACGTC 1 cut(s) 910
BtsCI GGATG 2 cut(s) 610, 675
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 887
Cac8I GCNNGC 2 cut(s) 360, 933
CfoI GCGC 2 cut(s) 301, 776
Cfr10I RCCGGY 2 cut(s) 244, 329
Cfr13I GGNCC 2 cut(s) 422, 899
Cfr42I CCGCGG 1 cut(s) 27
CseI GACGC 2 cut(s) 109, 836
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 2 cut(s) 56, 169
CviAII CATG 5 cut(s) 377, 432, 466, 832, 905
CviQI GTAC 2 cut(s) 56, 169
DdeI CTNAG 3 cut(s) 50, 697, 924
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
DriI GACNNNNNGTC 3 cut(s) 85, 277, 748
EaeI YGGCCR 2 cut(s) 411, 811
Eam1104I CTCTTC 1 cut(s) 230
Eam1105I GACNNNNNGTC 3 cut(s) 85, 277, 748
EarI CTCTTC 1 cut(s) 230
Ecl136II GAGCTC 2 cut(s) 223, 358
Eco24I GRGCYC 2 cut(s) 225, 360
Eco47I GGWCC 2 cut(s) 422, 899
Eco53kI GAGCTC 2 cut(s) 223, 358
EcoICRI GAGCTC 2 cut(s) 223, 358
EcoO109I RGGNCCY 1 cut(s) 899
EcoRII CCWGG 5 cut(s) 81, 514, 648, 763, 813
EcoT38I GRGCYC 2 cut(s) 225, 360
FaeI CATG 5 cut(s) 380, 435, 469, 835, 908
FaqI GGGAC 4 cut(s) 284, 447, 450, 885
FatI CATG 5 cut(s) 376, 431, 465, 831, 904
FauI CCCGC 1 cut(s) 326
Fnu4HI GCNGC 8 cut(s) 27, 294, 297, 363, 385, 576, 654, 929
FokI GGATG 2 cut(s) 597, 682
FriOI GRGCYC 2 cut(s) 225, 360
Fsp4HI GCNGC 8 cut(s) 27, 294, 297, 363, 385, 576, 654, 929
GlaI GCGC 2 cut(s) 300, 775
GluI GCNGC 8 cut(s) 27, 294, 297, 363, 385, 576, 654, 929
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 413, 813
HapII CCGG 4 cut(s) 235, 245, 330, 417
HgaI GACGC 2 cut(s) 109, 836
HhaI GCGC 2 cut(s) 301, 776
Hin1I GRCGYC 1 cut(s) 828
Hin1II CATG 5 cut(s) 380, 435, 469, 835, 908
Hin6I GCGC 2 cut(s) 299, 774
HinP1I GCGC 2 cut(s) 299, 774
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 3 cut(s) 264, 460, 673
HpaII CCGG 4 cut(s) 235, 245, 330, 417
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 374
Hpy188III TCNNGA 6 cut(s) 109, 202, 614, 682, 887, 963
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 2 cut(s) 80, 103
HpyAV CCTTC 7 cut(s) 82, 106, 121, 292, 346, 586, 655
HpyCH4III ACNGT 6 cut(s) 168, 173, 407, 479, 533, 572
HpyCH4IV ACGT 1 cut(s) 909
HpyCH4V TGCA 7 cut(s) 177, 324, 346, 469, 575, 656, 935
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 307, 330, 584, 641, 650, 707
HpyF3I CTNAG 3 cut(s) 50, 697, 924
HpySE526I ACGT 1 cut(s) 909
Hsp92I GRCGYC 1 cut(s) 828
Hsp92II CATG 5 cut(s) 380, 435, 469, 835, 908
HspAI GCGC 2 cut(s) 299, 774
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 1 cut(s) 598
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 4 cut(s) 220, 355, 518, 799
Lsp1109I GCAGC 4 cut(s) 396, 587, 640, 940
MabI ACCWGGT 1 cut(s) 81
MaeII ACGT 1 cut(s) 909
MaeIII GTNAC 2 cut(s) 162, 401
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 4 cut(s) 16, 190, 217, 951
MhlI GDGCHC 2 cut(s) 225, 360
MlsI TGGCCA 2 cut(s) 413, 813
MluCI AATT 3 cut(s) 212, 565, 945
MluNI TGGCCA 2 cut(s) 413, 813
MlyI GAGTC 2 cut(s) 469, 667
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 8 cut(s) 19, 211, 403, 413, 657, 706, 875, 883
Mox20I TGGCCA 2 cut(s) 413, 813
MroXI GAANNNNTTC 1 cut(s) 71
MscI TGGCCA 2 cut(s) 413, 813
MseI TTAA 1 cut(s) 939
MslI CAYNNNNRTG 1 cut(s) 430
Msp20I TGGCCA 2 cut(s) 413, 813
MspA1I CMGCKG 2 cut(s) 26, 578
MspI CCGG 4 cut(s) 235, 245, 330, 417
MspR9I CCNGG 5 cut(s) 83, 516, 650, 765, 815
Mva1269I GAATGC 3 cut(s) 73, 637, 710
MvaI CCWGG 5 cut(s) 83, 516, 650, 765, 815
MvnI CGCG 2 cut(s) 26, 299
MwoI GCNNNNNNNGC 7 cut(s) 35, 307, 330, 584, 641, 650, 707
NdeII GATC 1 cut(s) 598
NlaIII CATG 5 cut(s) 380, 435, 469, 835, 908
NlaIV GGNNCC 1 cut(s) 901
NmuCI GTSAC 1 cut(s) 162
NspI RCATGY 1 cut(s) 380
PciI ACATGT 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 711
PctI GAATGC 3 cut(s) 73, 637, 710
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 264
PfoI TCCNGGA 2 cut(s) 514, 763
PkrI GCNGC 8 cut(s) 28, 295, 298, 364, 386, 577, 655, 930
PleI GAGTC 2 cut(s) 468, 667
PpsI GAGTC 2 cut(s) 468, 667
PpuMI RGGWCCY 1 cut(s) 899
PscI ACATGT 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 104
Psp124BI GAGCTC 2 cut(s) 225, 360
Psp5II RGGWCCY 1 cut(s) 899
Psp6I CCWGG 5 cut(s) 81, 514, 648, 763, 813
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 5 cut(s) 81, 514, 648, 763, 813
PspN4I GGNNCC 1 cut(s) 901
PspPI GGNCC 2 cut(s) 422, 899
PspPPI RGGWCCY 1 cut(s) 899
PsrI GAACNNNNNNTAC 2 cut(s) 551, 583
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 57, 170
RsaNI GTAC 2 cut(s) 56, 169
RseI CAYNNNNRTG 1 cut(s) 430
SacI GAGCTC 2 cut(s) 225, 360
SacII CCGCGG 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 939
SatI GCNGC 8 cut(s) 27, 294, 297, 363, 385, 576, 654, 929
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 2 cut(s) 422, 899
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 2 cut(s) 469, 667
ScrFI CCNGG 5 cut(s) 83, 516, 650, 765, 815
SduI GDGCHC 2 cut(s) 225, 360
SexAI ACCWGGT 1 cut(s) 81
Sfr303I CCGCGG 1 cut(s) 27
SgrAI CRCCGGYG 2 cut(s) 244, 329
SgrBI CCGCGG 1 cut(s) 27
SinI GGWCC 2 cut(s) 422, 899
SmiMI CAYNNNNRTG 1 cut(s) 430
Sse9I AATT 3 cut(s) 212, 565, 945
SsiI CCGC 8 cut(s) 24, 26, 29, 38, 294, 297, 333, 363
SspI AATATT 1 cut(s) 787
SstI GAGCTC 2 cut(s) 225, 360
StyD4I CCNGG 5 cut(s) 81, 514, 648, 763, 813
TaaI ACNGT 6 cut(s) 168, 173, 407, 479, 533, 572
TaiI ACGT 1 cut(s) 912
TaqI TCGA 4 cut(s) 75, 216, 306, 867
TasI AATT 3 cut(s) 212, 565, 945
TatI WGTACW 2 cut(s) 55, 168
TauI GCSGC 4 cut(s) 29, 296, 299, 365
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 939
Tru9I TTAA 1 cut(s) 939
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 4 cut(s) 384, 575, 653, 928
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 5 cut(s) 17, 274, 365, 797, 848
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 422, 899
XceI RCATGY 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.