Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8216886.1

Orthogroup ID

OG0004980

Physical Location & Seq

Genomic Coordinates Forward (+)

54 .. 632

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8216886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggatcttttgagagctgtaattgttggagctgagggtactccttaccatgatggtctctttttctttgatgtttccttccccagtggttaccccaatgtgccaccgcatgtccactaccactcgggtggccttcgactaaatccaaatttgtatggttgtggaaaagtatgcctcagccttctcaacacctggtctgggaactcgaaagagatgtggatcccgggtgtgtccaccattctacaagttttagtgtccatacaagggctgatcttgaatacaaagccctactttaatgagcctggatatgcatctatgaatggttcagcagctggtgaaacaaggtcccggcagtataatgaggataccttcctcctatctttaacaacgatggtatacatgatgaggaggcctccgaaggtaagatttgttatcatggtccaagtgtatcaatatattgattatatctgcatacatttgattgtgtgcctagtttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

166

Amino Acids

18.64

Weight (kDa)

7.7

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15355
fragaria_vesca	FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000
malus_domestica	MD03G1227200.v1.1 MD11G1246700.v1.1
prunus_persica	Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1
pyrus_communis	pycom03g17490 pycom11g21880
rosa_chinensis	RchiOBHm_Chr5g0033831
rosa_laevigata	RLG00000033504
rosa_multiflora	Rmu_co8216886.1_g000001 Rmu_co8329207.1_g000001 Rmu_sc0001768.1_g000061 Rmu_sc0008210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046350
rosa_rugosa	Rorug05G0142600 Rorug05G0142700.1 Rorug05G0142800
rosa_samantha	Rh5AG233600 Rh5BG234100 Rh5CG264200 Rh5DG240900
rosa_wichuraiana	Rw5G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	3 cut(s)	12, 214, 227
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	198, 264
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	2 cut(s)	191, 301
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	17, 32, 332
AluI	AGCT	3 cut(s)	17, 32, 332
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	3 cut(s)	12, 214, 227
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	2 cut(s)	124, 223
AoxI	GGCC	2 cut(s)	130, 410
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	345, 439
AsuC2I	CCSGG	3 cut(s)	224, 225, 349
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	2 cut(s)	124, 223
AvaII	GGWCC	2 cut(s)	345, 439
BamHI	GGATCC	1 cut(s)	219
BbvCI	CCTCAGC	2 cut(s)	33, 176
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	2 cut(s)	47, 385
BciT130I	CCWGG	2 cut(s)	193, 303
BciVI	GTATCC	1 cut(s)	358
BcnI	CCSGG	3 cut(s)	224, 225, 349
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	5 cut(s)	193, 224, 225, 303, 349
Bme18I	GGWCC	2 cut(s)	345, 439
BmeT110I	CYCGRG	2 cut(s)	124, 223
BmgT120I	GGNCC	2 cut(s)	345, 439
BmiI	GGNNCC	2 cut(s)	221, 347
BmrFI	CCNGG	5 cut(s)	193, 224, 225, 303, 349
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	320
BmuI	ACTGGG	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
Bpu10I	CCTNAGC	2 cut(s)	33, 176
BpuMI	CCSGG	3 cut(s)	224, 225, 349
BsaBI	GATNNNNATC	2 cut(s)	218, 310
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 264
Bse1I	ACTGG	1 cut(s)	84
Bse8I	GATNNNNATC	2 cut(s)	218, 310
BseBI	CCWGG	2 cut(s)	193, 303
BseDI	CCNNGG	1 cut(s)	223
BseJI	GATNNNNATC	2 cut(s)	218, 310
BseLI	CCNNNNNNNGG	2 cut(s)	198, 264
BseMII	CTCAG	2 cut(s)	24, 190
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	132, 412
BsiHKCI	CYCGRG	2 cut(s)	124, 223
BsiSI	CCGG	2 cut(s)	224, 349
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	198, 264
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	132, 412
Bso31I	GGTCTC	1 cut(s)	62
BsoBI	CYCGRG	2 cut(s)	124, 223
Bsp143I	GATC	3 cut(s)	4, 219, 270
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	132, 412
BspCNI	CTCAG	2 cut(s)	25, 189
BspLI	GGNNCC	2 cut(s)	221, 347
BspPI	GGATC	3 cut(s)	12, 214, 227
BspTNI	GGTCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	3 cut(s)	4, 219, 270
BssNAI	GTATAC	1 cut(s)	397
Bst1107I	GTATAC	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	193, 303
BstDEI	CTNAG	2 cut(s)	33, 176
BstEII	GGTNACC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	7, 222, 273
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	4, 219, 270
BstNI	CCWGG	2 cut(s)	193, 303
BstNSI	RCATGY	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	5 cut(s)	191, 222, 223, 301, 347
BstV1I	GCAGC	1 cut(s)	341
BstX2I	RGATCY	2 cut(s)	4, 219
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	2 cut(s)	4, 219
BstZ17I	GTATAC	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	132, 412
BtsIMutI	CAGTG	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	345, 439
Cfr9I	CCCGGG	1 cut(s)	223
CsiI	ACCWGGT	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	4 cut(s)	50, 110, 400, 436
CviJI	RGCY	9 cut(s)	17, 32, 132, 180, 268, 286, 301, 332, 412
CviKI_1	RGCY	9 cut(s)	17, 32, 132, 180, 268, 286, 301, 332, 412
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	2 cut(s)	33, 176
DpnI	GATC	3 cut(s)	6, 221, 272
DpnII	GATC	3 cut(s)	4, 219, 270
Eco147I	AGGCCT	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	2 cut(s)	345, 439
Eco88I	CYCGRG	2 cut(s)	124, 223
Eco91I	GGTNACC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	345
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	191, 301
EcoT22I	ATGCAT	1 cut(s)	313
FaeI	CATG	4 cut(s)	53, 113, 403, 439
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	4 cut(s)	49, 109, 399, 435
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	132, 412
HapII	CCGG	2 cut(s)	224, 349
Hin1II	CATG	4 cut(s)	53, 113, 403, 439
HpaII	CCGG	2 cut(s)	224, 349
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	115, 234, 397
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	2 cut(s)	274, 498
Hpy8I	GTNNAC	3 cut(s)	115, 234, 397
HpyAV	CCTTC	5 cut(s)	88, 143, 191, 379, 412
HpyCH4V	TGCA	2 cut(s)	311, 471
HpyF3I	CTNAG	2 cut(s)	33, 176
Hsp92II	CATG	4 cut(s)	53, 113, 403, 439
Kzo9I	GATC	3 cut(s)	4, 219, 270
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	9 cut(s)	97, 178, 183, 205, 237, 288, 315, 318, 362
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	320
MabI	ACCWGGT	1 cut(s)	191
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	6, 221, 272
MboI	GATC	3 cut(s)	4, 219, 270
MflI	RGATCY	2 cut(s)	4, 219
MluCI	AATT	2 cut(s)	21, 148
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	7 cut(s)	28, 185, 355, 383, 399, 402, 423
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	2 cut(s)	294, 383
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	2 cut(s)	224, 349
MspR9I	CCNGG	5 cut(s)	193, 224, 225, 303, 349
MvaI	CCWGG	2 cut(s)	193, 303
NciI	CCSGG	3 cut(s)	224, 225, 349
NdeII	GATC	3 cut(s)	4, 219, 270
NlaIII	CATG	4 cut(s)	53, 113, 403, 439
NlaIV	GGNNCC	2 cut(s)	221, 347
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	191, 301
PspEI	GGTNACC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	191, 301
PspN4I	GGNNCC	2 cut(s)	221, 347
PspPI	GGNCC	2 cut(s)	345, 439
PspPPI	RGGWCCY	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	4, 219
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	294, 383
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	3 cut(s)	4, 219, 270
Sau96I	GGNCC	2 cut(s)	345, 439
ScrFI	CCNGG	5 cut(s)	193, 224, 225, 303, 349
SetI	ASST	7 cut(s)	19, 34, 194, 334, 347, 371, 423
SexAI	ACCWGGT	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	320
SinI	GGWCC	2 cut(s)	345, 439
SmaI	CCCGGG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	21, 148
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	491
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	5 cut(s)	191, 222, 223, 301, 347
TaqI	TCGA	2 cut(s)	136, 206
TasI	AATT	2 cut(s)	21, 148
Tru1I	TTAA	2 cut(s)	294, 383
Tru9I	TTAA	2 cut(s)	294, 383
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	332
TspMI	CCCGGG	1 cut(s)	223
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	345, 439
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	113
XmaI	CCCGGG	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.