Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008210.1

Orthogroup ID

OG0004980

Physical Location & Seq

Genomic Coordinates Forward (+)

71 .. 2539

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008210.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgactcagccaccaaagaactgggcgaagagaattcaggaagagtggaagagcctggagaaagatttgcctgacacagtatttgttagagtctatgagacaaggatggatcttttgagagctgtaattgttggagctgagggtactccttaccatgatggtctctttttctttgatgtttccttccccagtggttaccccaatgtgccaccgcatgtccactaccactcgggtggccttcgactaaatccaaatttgtatggttgtggaaaagtatgcctcagccttctcaacacctggtctgggaactcgaaagagatgtggatcccgggtgtgtccaccattctacaagttttagtgtccatacaagggctgatcttgaatacaaagccctactttaatgagcctggatatgcatctatgaatggttcagcagctggtgaaacaaggtcccggcagtataatgaggataccttcctcctatctttaacaacgatggtatacatgatgaggaggcctccgaagcattttgaggattttgttgtggggcatttccgggatcgtgctcatgacattctggtggcatgtaaagcatacatggatggtgctcaagtgggatgtctggtcaaaggtggggttcaggatgttgatgagggtgacaagagttgttctcagcggtttaaggattctttagcagggcacatgccgatgcttgtcaaagagtttacaaatataggtgtcaaggattgcgagaaatatgtatcagcagctgtaaatgggaacgagcagattggtagtatgccgcaggctgcaacatcaatggtttcatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

277

Amino Acids

30.84

Weight (kDa)

6.44

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15355
fragaria_vesca	FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000
malus_domestica	MD03G1227200.v1.1 MD11G1246700.v1.1
prunus_persica	Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1
pyrus_communis	pycom03g17490 pycom11g21880
rosa_chinensis	RchiOBHm_Chr5g0033831
rosa_laevigata	RLG00000033504
rosa_multiflora	Rmu_co8216886.1_g000001 Rmu_co8329207.1_g000001 Rmu_sc0001768.1_g000061 Rmu_sc0008210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046350
rosa_rugosa	Rorug05G0142600 Rorug05G0142700.1 Rorug05G0142800
rosa_samantha	Rh5AG233600 Rh5BG234100 Rh5CG264200 Rh5DG240900
rosa_wichuraiana	Rw5G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	3 cut(s)	212, 676, 803
AclWI	GGATC	4 cut(s)	117, 319, 332, 567
AcsI	RAATTY	2 cut(s)	33, 253
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	303, 369
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	3 cut(s)	54, 296, 406
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	4 cut(s)	122, 137, 437, 770
AluI	AGCT	4 cut(s)	122, 137, 437, 770
Alw21I	GWGCWC	2 cut(s)	568, 610
Alw26I	GTCTC	2 cut(s)	92, 167
AlwI	GGATC	4 cut(s)	117, 319, 332, 567
AlwNI	CAGNNNCTG	2 cut(s)	437, 770
Ama87I	CYCGRG	2 cut(s)	229, 328
AoxI	GGCC	2 cut(s)	235, 515
ApeKI	GCWGC	3 cut(s)	434, 767, 809
ApoI	RAATTY	2 cut(s)	33, 253
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspS9I	GGNCC	1 cut(s)	450
AsuC2I	CCSGG	4 cut(s)	329, 330, 454, 557
AsuHPI	GGTGA	2 cut(s)	452, 668
AvaI	CYCGRG	2 cut(s)	229, 328
AvaII	GGWCC	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	702
BamHI	GGATCC	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	568, 610
BbvCI	CCTCAGC	2 cut(s)	138, 281
BbvI	GCAGC	3 cut(s)	446, 779, 796
BccI	CCATC	4 cut(s)	100, 152, 490, 596
BciT130I	CCWGG	3 cut(s)	56, 298, 408
BciVI	GTATCC	1 cut(s)	463
BcnI	CCSGG	4 cut(s)	329, 330, 454, 557
BcoDI	GTCTC	2 cut(s)	92, 167
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	4 cut(s)	435, 768, 803, 810
BlsI	GCNGC	4 cut(s)	436, 769, 804, 811
Bme1390I	CCNGG	7 cut(s)	56, 298, 329, 330, 408, 454, 557
Bme18I	GGWCC	1 cut(s)	450
BmeT110I	CYCGRG	2 cut(s)	229, 328
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	2 cut(s)	326, 452
BmrFI	CCNGG	7 cut(s)	56, 298, 329, 330, 408, 454, 557
BmrI	ACTGGG	2 cut(s)	31, 183
BmsI	GCATC	2 cut(s)	425, 699
BmuI	ACTGGG	2 cut(s)	31, 183
BplI	GAGNNNNNCTC	4 cut(s)	502, 534, 655, 687
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	2 cut(s)	138, 281
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	4 cut(s)	329, 330, 454, 557
BsaBI	GATNNNNATC	2 cut(s)	323, 415
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 369
Bse1I	ACTGG	2 cut(s)	26, 189
Bse8I	GATNNNNATC	2 cut(s)	323, 415
BseBI	CCWGG	3 cut(s)	56, 298, 408
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	4 cut(s)	111, 607, 623, 649
BseJI	GATNNNNATC	2 cut(s)	323, 415
BseLI	CCNNNNNNNGG	2 cut(s)	303, 369
BseMII	CTCAG	4 cut(s)	20, 129, 295, 686
BseNI	ACTGG	2 cut(s)	26, 189
BseRI	GAGGAG	1 cut(s)	526
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	3 cut(s)	446, 779, 796
BshFI	GGCC	2 cut(s)	237, 517
BsiHKAI	GWGCWC	2 cut(s)	568, 610
BsiHKCI	CYCGRG	2 cut(s)	229, 328
BsiSI	CCGG	3 cut(s)	329, 454, 556
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	303, 369
BsmAI	GTCTC	2 cut(s)	92, 167
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	237, 517
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	2 cut(s)	229, 328
Bsp1286I	GDGCHC	3 cut(s)	568, 610, 702
Bsp143I	GATC	4 cut(s)	109, 324, 375, 559
BspACI	CCGC	3 cut(s)	212, 676, 803
BspANI	GGCC	2 cut(s)	237, 517
BspCNI	CTCAG	4 cut(s)	19, 130, 294, 685
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	326, 452
BspPI	GGATC	4 cut(s)	117, 319, 332, 567
BspQI	GCTCTTC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	26, 189
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	4 cut(s)	109, 324, 375, 559
BssNAI	GTATAC	1 cut(s)	502
Bst1107I	GTATAC	1 cut(s)	502
Bst2UI	CCWGG	3 cut(s)	56, 298, 408
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	3 cut(s)	23, 36, 44
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	4 cut(s)	6, 138, 281, 672
BstEII	GGTNACC	1 cut(s)	194
BstF5I	GGATG	4 cut(s)	111, 607, 623, 649
BstKTI	GATC	4 cut(s)	112, 327, 378, 562
BstMAI	GTCTC	2 cut(s)	92, 167
BstMBI	GATC	4 cut(s)	109, 324, 375, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	523, 590
BstNI	CCWGG	3 cut(s)	56, 298, 408
BstNSI	RCATGY	3 cut(s)	218, 588, 706
BstPI	GGTNACC	1 cut(s)	194
BstSCI	CCNGG	7 cut(s)	54, 296, 327, 328, 406, 452, 555
BstSLI	GKGCMC	1 cut(s)	702
BstV1I	GCAGC	3 cut(s)	446, 779, 796
BstX2I	RGATCY	2 cut(s)	109, 324
BstXI	CCANNNNNNTGG	2 cut(s)	21, 233
BstYI	RGATCY	2 cut(s)	109, 324
BstZ17I	GTATAC	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	237, 517
BtsCI	GGATG	4 cut(s)	111, 607, 623, 649
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	807
CaiI	CAGNNNCTG	2 cut(s)	437, 770
CciI	TCATGA	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	450
Cfr9I	CCCGGG	1 cut(s)	328
CsiI	ACCWGGT	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	8 cut(s)	155, 215, 505, 569, 585, 598, 703, 828
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	4 cut(s)	6, 138, 281, 672
DpnI	GATC	4 cut(s)	111, 326, 377, 561
DpnII	GATC	4 cut(s)	109, 324, 375, 559
Eam1104I	CTCTTC	3 cut(s)	23, 36, 44
EarI	CTCTTC	3 cut(s)	23, 36, 44
Eco147I	AGGCCT	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	450
Eco88I	CYCGRG	2 cut(s)	229, 328
Eco91I	GGTNACC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	450
EcoO65I	GGTNACC	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	3 cut(s)	54, 296, 406
EcoT22I	ATGCAT	1 cut(s)	418
FaeI	CATG	8 cut(s)	158, 218, 508, 572, 588, 601, 706, 831
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	8 cut(s)	154, 214, 504, 568, 584, 597, 702, 827
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	4 cut(s)	435, 768, 803, 810
FokI	GGATG	4 cut(s)	118, 614, 630, 656
Fsp4HI	GCNGC	4 cut(s)	435, 768, 803, 810
GluI	GCNGC	4 cut(s)	435, 768, 803, 810
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	237, 517
HapII	CCGG	3 cut(s)	329, 454, 556
Hin1II	CATG	8 cut(s)	158, 218, 508, 572, 588, 601, 706, 831
HinfI	GANTC	3 cut(s)	4, 90, 686
HpaII	CCGG	3 cut(s)	329, 454, 556
HphI	GGTGA	2 cut(s)	452, 668
Hpy166II	GTNNAC	4 cut(s)	220, 339, 502, 726
Hpy188I	TCNGA	1 cut(s)	522
Hpy188III	TCNNGA	4 cut(s)	38, 379, 569, 641
Hpy8I	GTNNAC	4 cut(s)	220, 339, 502, 726
HpyAV	CCTTC	4 cut(s)	193, 248, 296, 484
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	416, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	523, 590
HpyF3I	CTNAG	4 cut(s)	6, 138, 281, 672
Hsp92II	CATG	8 cut(s)	158, 218, 508, 572, 588, 601, 706, 831
Kzo9I	GATC	4 cut(s)	109, 324, 375, 559
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	3 cut(s)	446, 779, 796
LweI	GCATC	2 cut(s)	425, 699
MabI	ACCWGGT	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	194, 656
MalI	GATC	4 cut(s)	111, 326, 377, 561
MboI	GATC	4 cut(s)	109, 324, 375, 559
MboII	GAAGA	3 cut(s)	40, 53, 61
MflI	RGATCY	2 cut(s)	109, 324
MhlI	GDGCHC	3 cut(s)	568, 610, 702
MluCI	AATT	3 cut(s)	33, 126, 253
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	9 cut(s)	133, 290, 460, 488, 504, 507, 526, 528, 646
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	3 cut(s)	399, 488, 681
MslI	CAYNNNNRTG	3 cut(s)	231, 578, 707
MspA1I	CMGCKG	3 cut(s)	437, 676, 770
MspI	CCGG	3 cut(s)	329, 454, 556
MspR9I	CCNGG	7 cut(s)	56, 298, 329, 330, 408, 454, 557
MvaI	CCWGG	3 cut(s)	56, 298, 408
MwoI	GCNNNNNNNGC	2 cut(s)	523, 590
NciI	CCSGG	4 cut(s)	329, 330, 454, 557
NdeII	GATC	4 cut(s)	109, 324, 375, 559
NlaIII	CATG	8 cut(s)	158, 218, 508, 572, 588, 601, 706, 831
NlaIV	GGNNCC	2 cut(s)	326, 452
NmuCI	GTSAC	1 cut(s)	656
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	3 cut(s)	218, 588, 706
OliI	CACNNNNGTG	1 cut(s)	231
PagI	TCATGA	1 cut(s)	568
PceI	AGGCCT	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	686
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	4 cut(s)	436, 769, 804, 811
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	54, 296, 406
PspEI	GGTNACC	1 cut(s)	194
PspGI	CCWGG	3 cut(s)	54, 296, 406
PspN4I	GGNNCC	2 cut(s)	326, 452
PspPI	GGNCC	1 cut(s)	450
PspPPI	RGGWCCY	1 cut(s)	450
PstNI	CAGNNNCTG	2 cut(s)	437, 770
PsuI	RGATCY	2 cut(s)	109, 324
PvuII	CAGCTG	2 cut(s)	437, 770
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	3 cut(s)	231, 578, 707
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	399, 488, 681
SatI	GCNGC	4 cut(s)	435, 768, 803, 810
Sau3AI	GATC	4 cut(s)	109, 324, 375, 559
Sau96I	GGNCC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	7 cut(s)	56, 298, 329, 330, 408, 454, 557
SduI	GDGCHC	3 cut(s)	568, 610, 702
SetI	ASST	9 cut(s)	124, 139, 299, 439, 452, 476, 634, 739, 772
SexAI	ACCWGGT	1 cut(s)	296
SfaNI	GCATC	2 cut(s)	425, 699
SinI	GGWCC	1 cut(s)	450
SmaI	CCCGGG	1 cut(s)	330
SmiMI	CAYNNNNRTG	3 cut(s)	231, 578, 707
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	3 cut(s)	33, 126, 253
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	3 cut(s)	212, 676, 803
StuI	AGGCCT	1 cut(s)	517
StyD4I	CCNGG	7 cut(s)	54, 296, 327, 328, 406, 452, 555
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	241, 311
TasI	AATT	3 cut(s)	33, 126, 253
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	3 cut(s)	399, 488, 681
Tru9I	TTAA	3 cut(s)	399, 488, 681
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	3 cut(s)	434, 767, 809
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	2 cut(s)	437, 816
TspMI	CCCGGG	1 cut(s)	328
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	450
XapI	RAATTY	2 cut(s)	33, 253
XceI	RCATGY	3 cut(s)	218, 588, 706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XmaI	CCCGGG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.