Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329207.1

Orthogroup ID

OG0004980

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 971

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 952 bp

gccccagcatcaaatcactttattgacttggatggtcccaattctgatgcatctgctgacgatgttgatgactgtactgatacttgttttgaagagtttgattatgccttcttgcaatcccatttcgataatgtgggtattcctcctggagtagaggcgcctgtccctcatattccttggttgtcagatcctcctaaaagtaatgtaagttcagtttctggaagtagtactgttgatacaaggtatcaaatgaaatcagattatgttggcctccatggaaatgagctgtttccctggacagatcctcctagtttcaactttaagccaaccgttgtgggtagttcaagcttgaagacccaaacagacagtatcggtcacccaaatggacagtaccagtcatcttggaaacttccaaaagctgctagaagcagaaagaaacaatctgcttcacatccccaagttagtgctcctagtctcccagttggagcagaaccatcaaaatctcaaaggctcttaggagctttgcagcgtaaaaagaagctattttcttcaagtagttcgactaattatgatgcaatgaagttcgatactggagccgagacatctttttttggacataatttaccctacagtccaatttatcctcatggattacagtcaccctggttgtcagattctttgtcagcaattagtgctaaaccaaatcattcaagtttctatggtccaattggttccatataccctcctggagagttagtaggtatcccttgggttaagggtgtttcccaaactcaacacaatgtcactgctgcaagcctttcaactacccctgctagacaattgtctagcaaggaaatagatgaaattatgcagaagtacaagggttttaaacaatttgatacagttgaagatcattcagaccatcactatatactctctggtacactcaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

317

Amino Acids

34.5

Weight (kDa)

5.98

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15355
fragaria_vesca	FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000
malus_domestica	MD03G1227200.v1.1 MD11G1246700.v1.1
prunus_persica	Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1
pyrus_communis	pycom03g17490 pycom11g21880
rosa_chinensis	RchiOBHm_Chr5g0033831
rosa_laevigata	RLG00000033504
rosa_multiflora	Rmu_co8216886.1_g000001 Rmu_co8329207.1_g000001 Rmu_sc0001768.1_g000061 Rmu_sc0008210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046350
rosa_rugosa	Rorug05G0142600 Rorug05G0142700.1 Rorug05G0142800
rosa_samantha	Rh5AG233600 Rh5BG234100 Rh5CG264200 Rh5DG240900
rosa_wichuraiana	Rw5G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AclWI	GGATC	2 cut(s)	182, 296
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	5 cut(s)	76, 229, 392, 878, 943
AgsI	TTSAA	8 cut(s)	92, 316, 345, 352, 552, 711, 822, 908
AjnI	CCWGG	4 cut(s)	145, 293, 662, 745
AluBI	AGCT	5 cut(s)	286, 348, 419, 521, 541
AluI	AGCT	5 cut(s)	286, 348, 419, 521, 541
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	2 cut(s)	479, 593
AlwI	GGATC	2 cut(s)	182, 296
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	3 cut(s)	419, 526, 809
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	35, 722
AsuHPI	GGTGA	2 cut(s)	368, 651
AvaII	GGWCC	2 cut(s)	35, 722
BanI	GGYRCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	406, 538, 796
BccI	CCATC	3 cut(s)	26, 502, 930
BciT130I	CCWGG	4 cut(s)	147, 295, 664, 747
BciVI	GTATCC	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	479, 593
BfaI	CTAG	5 cut(s)	309, 423, 471, 834, 846
BfmI	CTRYAG	1 cut(s)	628
BfoI	RGCGCY	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	3 cut(s)	420, 527, 810
BlsI	GCNGC	3 cut(s)	421, 528, 811
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	4 cut(s)	147, 295, 664, 747
Bme18I	GGWCC	2 cut(s)	35, 722
BmgT120I	GGNCC	2 cut(s)	35, 722
BmiI	GGNNCC	4 cut(s)	37, 159, 595, 733
BmrFI	CCNGG	4 cut(s)	147, 295, 664, 747
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	4 cut(s)	17, 37, 59, 562
BmuI	ACTGGG	1 cut(s)	473
BoxI	GACNNNNGTC	1 cut(s)	841
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	3 cut(s)	168, 612, 768
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	5 cut(s)	176, 274, 293, 662, 767
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 319, 741, 771
Bse1I	ACTGG	3 cut(s)	394, 479, 595
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	4 cut(s)	147, 295, 664, 747
BseDI	CCNNGG	5 cut(s)	176, 274, 293, 662, 767
BseGI	GGATG	2 cut(s)	37, 451
BseMI	GCAATG	1 cut(s)	582
BseNI	ACTGG	3 cut(s)	394, 479, 595
BseXI	GCAGC	3 cut(s)	406, 538, 796
BseYI	CCCAGC	1 cut(s)	4
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	469
BslFI	GGGAC	2 cut(s)	21, 149
BsmAI	GTCTC	2 cut(s)	479, 593
BsmFI	GGGAC	2 cut(s)	21, 149
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	3 cut(s)	187, 301, 910
Bsp19I	CCATGG	1 cut(s)	274
BspANI	GGCC	1 cut(s)	270
BspLI	GGNNCC	4 cut(s)	37, 159, 595, 733
BspPI	GGATC	2 cut(s)	182, 296
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	3 cut(s)	394, 479, 595
BssECI	CCNNGG	5 cut(s)	176, 274, 293, 662, 767
BssMI	GATC	3 cut(s)	187, 301, 910
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	3 cut(s)	176, 274, 767
Bst2UI	CCWGG	4 cut(s)	147, 295, 664, 747
Bst4CI	ACNGT	8 cut(s)	74, 232, 331, 368, 390, 632, 657, 904
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	814
BstDEI	CTNAG	1 cut(s)	514
BstDSI	CCRYGG	1 cut(s)	274
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	37, 451
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	190, 304, 913
BstMAI	GTCTC	2 cut(s)	479, 593
BstMBI	GATC	3 cut(s)	187, 301, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	4 cut(s)	147, 295, 664, 747
BstPAI	GACNNNNGTC	1 cut(s)	841
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	145, 293, 662, 745
BstSFI	CTRYAG	1 cut(s)	628
BstV1I	GCAGC	3 cut(s)	406, 538, 796
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	2 cut(s)	187, 301
BstYI	RGATCY	2 cut(s)	187, 301
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	37, 451
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	1 cut(s)	804
Cac8I	GCNNGC	1 cut(s)	814
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	35, 722
Csp6I	GTAC	5 cut(s)	75, 228, 391, 877, 942
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	2 cut(s)	275, 647
CviQI	GTAC	5 cut(s)	75, 228, 391, 877, 942
DdeI	CTNAG	1 cut(s)	514
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	3 cut(s)	189, 303, 912
DpnII	GATC	3 cut(s)	187, 301, 910
DraI	TTTAAA	1 cut(s)	889
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	3 cut(s)	176, 274, 767
Eco47I	GGWCC	2 cut(s)	35, 722
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	4 cut(s)	145, 293, 662, 745
EcoT14I	CCWWGG	3 cut(s)	176, 274, 767
EcoT22I	ATGCAT	1 cut(s)	52
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	176, 274, 767
FaeI	CATG	2 cut(s)	278, 650
FaqI	GGGAC	2 cut(s)	21, 149
FatI	CATG	2 cut(s)	274, 646
Fnu4HI	GCNGC	3 cut(s)	420, 527, 810
FokI	GGATG	2 cut(s)	44, 438
Fsp4HI	GCNGC	3 cut(s)	420, 527, 810
FspBI	CTAG	5 cut(s)	309, 423, 471, 834, 846
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	3 cut(s)	420, 527, 810
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	3 cut(s)	168, 612, 768
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	278, 650
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	1 cut(s)	674
HphI	GGTGA	2 cut(s)	368, 651
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188I	TCNGA	5 cut(s)	46, 187, 259, 673, 919
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	1 cut(s)	944
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	8 cut(s)	74, 232, 331, 368, 390, 632, 657, 904
HpyCH4V	TGCA	6 cut(s)	50, 115, 526, 575, 812, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	1 cut(s)	514
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	278, 650
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	187, 301, 910
LmnI	GCTCC	4 cut(s)	472, 485, 518, 593
Lsp1109I	GCAGC	3 cut(s)	406, 538, 796
LweI	GCATC	4 cut(s)	17, 37, 59, 562
MaeI	CTAG	5 cut(s)	309, 423, 471, 834, 846
MaeIII	GTNAC	3 cut(s)	374, 657, 802
MalI	GATC	3 cut(s)	189, 303, 912
MboI	GATC	3 cut(s)	187, 301, 910
MboII	GAAGA	4 cut(s)	104, 364, 540, 920
MfeI	CAATTG	2 cut(s)	726, 839
MflI	RGATCY	2 cut(s)	187, 301
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	9 cut(s)	40, 565, 619, 636, 687, 726, 839, 864, 893
Mly113I	GGCGCC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	8 cut(s)	148, 153, 177, 201, 281, 315, 654, 753
Mph1103I	ATGCAT	1 cut(s)	52
MseI	TTAA	3 cut(s)	321, 774, 888
MslI	CAYNNNNRTG	2 cut(s)	279, 381
MspR9I	CCNGG	4 cut(s)	147, 295, 664, 747
MunI	CAATTG	2 cut(s)	726, 839
MvaI	CCWGG	4 cut(s)	147, 295, 664, 747
MwoI	GCNNNNNNNGC	1 cut(s)	692
NarI	GGCGCC	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	3 cut(s)	187, 301, 910
NlaIII	CATG	2 cut(s)	278, 650
NlaIV	GGNNCC	4 cut(s)	37, 159, 595, 733
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	3 cut(s)	374, 657, 802
NsiI	ATGCAT	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	674
PfoI	TCCNGGA	2 cut(s)	145, 745
PkrI	GCNGC	3 cut(s)	421, 528, 811
PluTI	GGCGCC	1 cut(s)	161
PshAI	GACNNNNGTC	1 cut(s)	841
Psp6I	CCWGG	4 cut(s)	145, 293, 662, 745
PspEI	GGTNACC	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	4 cut(s)	145, 293, 662, 745
PspN4I	GGNNCC	4 cut(s)	37, 159, 595, 733
PspPI	GGNCC	2 cut(s)	35, 722
PsrI	GAACNNNNNNTAC	2 cut(s)	193, 225
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	187, 301
RsaI	GTAC	5 cut(s)	76, 229, 392, 878, 943
RsaNI	GTAC	5 cut(s)	75, 228, 391, 877, 942
RseI	CAYNNNNRTG	2 cut(s)	279, 381
SaqAI	TTAA	3 cut(s)	321, 774, 888
SatI	GCNGC	3 cut(s)	420, 527, 810
Sau3AI	GATC	3 cut(s)	187, 301, 910
Sau96I	GGNCC	2 cut(s)	35, 722
ScaI	AGTACT	1 cut(s)	229
ScrFI	CCNGG	4 cut(s)	147, 295, 664, 747
SduI	GDGCHC	1 cut(s)	469
SetI	ASST	7 cut(s)	245, 288, 350, 421, 523, 543, 763
SfaNI	GCATC	4 cut(s)	17, 37, 59, 562
SfcI	CTRYAG	1 cut(s)	628
SfoI	GGCGCC	1 cut(s)	159
SinI	GGWCC	2 cut(s)	35, 722
SmiMI	CAYNNNNRTG	2 cut(s)	279, 381
Sse9I	AATT	9 cut(s)	40, 565, 619, 636, 687, 726, 839, 864, 893
SspDI	GGCGCC	1 cut(s)	157
SspMI	CTAG	5 cut(s)	309, 423, 471, 834, 846
StyD4I	CCNGG	4 cut(s)	145, 293, 662, 745
StyI	CCWWGG	3 cut(s)	176, 274, 767
TaaI	ACNGT	8 cut(s)	74, 232, 331, 368, 390, 632, 657, 904
TaqI	TCGA	3 cut(s)	126, 560, 585
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	9 cut(s)	40, 565, 619, 636, 687, 726, 839, 864, 893
TatI	WGTACW	3 cut(s)	74, 227, 876
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	3 cut(s)	321, 774, 888
Tru9I	TTAA	3 cut(s)	321, 774, 888
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	3 cut(s)	374, 657, 802
TseI	GCWGC	3 cut(s)	419, 526, 809
Tsp45I	GTSAC	3 cut(s)	374, 657, 802
TspDTI	ATGAA	3 cut(s)	266, 593, 876
TspRI	CASTG	1 cut(s)	811
VpaK11BI	GGWCC	2 cut(s)	35, 722
XspI	CTAG	5 cut(s)	309, 423, 471, 834, 846
ZrmI	AGTACT	1 cut(s)	229
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.