Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004980

Physical Location & Seq

Genomic Coordinates Reverse (-)

65509609 .. 65515298

Gene Structure 5690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGGATACCGACGACGTTGTCGAGGTCGCCGCTCCGGTTTCTTGCTCTCGGAAATTGCGAAAGAACAAGGAGGTAAATTTGCAGGATGTGATTGAAATTGACAAAGATGATTCTGCTGCTGCAATGTTTATTTATGAGAAAATTGACAGAAGTATCAAAGGAAAGGCAGTGGAAAATTCTTCTGATGGAAATGGGAATGGTTACCATATTCATCAATCAAAGGAAGCTGTCCTCCATACTTCTGTTGGTTCTTCTGGTATGGAAACCCTTGGCTCAGTCAATGGAATTGAAATTGCTAAGGATGTCGCCCCAGCATCAAATCACTTTATTGACTTAGATGGTCCCAATTCTGATGCATCTGCTGACGATGGTGACGACTGTACTGATACTTGTTTTGAAGAGTTTGATTATGCCTTCTTGCAATCCCATTTTGATAATGTGGGTATTCCTCCTGGAGTAGAGGCGCCTGTCCCTCATATTCCTTGGTTGTCAGATCCTCCTAAAAGTAATGTAAGTTCAGTTTCTGGAAGTAGTTCTGTTGATACAAGGTGTCAAATGAAATCAGATTATGTTGGCCTCCATGGAAATGAGCTGTTTCCCTGGACAGATCCTCCTGGTTTCAACTTTAAGCCAACCGTTGTGGGTAGTTCAAGCTTGAAGACCCAAACAGACAGTATCGGTCTCCCAAATGGACAGTATCAGTCATCTTGGAAACTTCCAAAAGCTGCTAGAAGCAGAAAGAAACAATCTGCTTCACATCCCCAAGTTAGTGCTCCTAGTCTCCCAGTTGGAGCAGAACCATCAAAATCTCAAAGGCTCTTAGGAGCTTTGCAGCGTAAAAAGAAGCTATTTTCTTCAAGTATTTCGACTAATTATGATGCAATGAAGTTCGAAACTGGAGCCGAGACATCTGTTTTTGGACATAATTTACCCTACAGTCCAATTTATCCTTATGGATTACAGTCACCCTGGTTGTCAGATTCTTTGTCAGCAATTAGTGCTAAACCAAATCATTCAAGTTTCTACGGTCCAATTGGTTCCATATACCCTCCTGGTGAGTTAGTAGGTATCCCTTGGGTTAAGGGTGTTTCCCAAACTCAACACAATGTCACTGCTGCAAGCCTTTCAACAACCCCTGCTAGACAATTGTCTAGCAAGGAAATAGATGAAATTATGCAGAAGTACAAGGGTTTTAAACAATTTGATACAGTTGAAGATCATTCAGACCATCACTATATACTCTCTGGTACACTCAATGGTAATTCAATGACTCAGCCACCAAAGAACTGGGCAAAGAGAATTCAGGAAGAGTGGAAGAGCCTGGAGAAAGATTTGCCTGACACAGTATTTGTTAGAGTCTATGAGACAAGGATGGATCTTTTGAGAGCTGTAATTGTTGGAGCTGAGGGTACTCCGTACCATGATGGTCTCTTTTTCTTTGATGTTTCCTTCCCCAGCGGTTACCCCAATGTGCCACCGCATGTCCACTACCACTCGGGTGGCCTTCGACTAAATCCAAATTTGTATGGTTGTGGAAAAGTATGCCTGAGCCTTCTCAACACCTGGTCTGGGAACTCGAAAGAGATGTGGATCCCGGGTGTGTCCACCATTCTACAAGTTTTAGTGTCCATACAAGGGCTGATCTTGAATACAAAGCCCTACTTTAATGAGCCTGGATATGCATCTATGAATGGTTCAGCAGCTGGTGAAACAAGGTCCCGGCAGTATAATGAGGATACCTTCCTTCTATCTTTAACAACGATGGTATACATGATGAGGAGGCCTCCGAAGCATTTTGAGGATTTTGTTGTGGGGCATTTCCGGGATCGTGCTCATGACATTCTGGTGGCATGTAAAGCATACATGGATGGTGCTCAAGTGGGATGTCTGGTCAAAGGGGGGTTCAGGATGTTGATGAGGGTGACAAGAGTTGTTCTCAGCGGTTTAAAGATTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

652

Amino Acids

71.54

Weight (kDa)

6.24

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	433 - 554	1.3e-21	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15355
fragaria_vesca	FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000
malus_domestica	MD03G1227200.v1.1 MD11G1246700.v1.1
prunus_persica	Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1
pyrus_communis	pycom03g17490 pycom11g21880
rosa_chinensis	RchiOBHm_Chr5g0033831
rosa_laevigata	RLG00000033504
rosa_multiflora	Rmu_co8216886.1_g000001 Rmu_co8329207.1_g000001 Rmu_sc0001768.1_g000061 Rmu_sc0008210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046350
rosa_rugosa	Rorug05G0142600 Rorug05G0142700.1 Rorug05G0142800
rosa_samantha	Rh5AG233600 Rh5BG234100 Rh5CG264200 Rh5DG240900
rosa_wichuraiana	Rw5G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	1767
AciI	CCGC	4 cut(s)	30, 1458, 1478, 1941
AclWI	GGATC	6 cut(s)	488, 602, 1383, 1585, 1598, 1833
AcsI	RAATTY	4 cut(s)	76, 175, 1299, 1519
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	5 cut(s)	382, 1184, 1249, 1411, 1418
AfiI	CCNNNNNNNGG	2 cut(s)	1569, 1635
AjnI	CCWGG	8 cut(s)	451, 599, 613, 968, 1051, 1320, 1562, 1672
AleI	CACNNNNGTG	1 cut(s)	1497
AluBI	AGCT	9 cut(s)	227, 592, 654, 725, 827, 847, 1388, 1403, 1703
AluI	AGCT	9 cut(s)	227, 592, 654, 725, 827, 847, 1388, 1403, 1703
Alw21I	GWGCWC	3 cut(s)	775, 1834, 1876
Alw26I	GTCTC	5 cut(s)	686, 785, 899, 1358, 1433
AlwI	GGATC	6 cut(s)	488, 602, 1383, 1585, 1598, 1833
AlwNI	CAGNNNCTG	2 cut(s)	524, 1703
Ama87I	CYCGRG	2 cut(s)	1495, 1594
AoxI	GGCC	3 cut(s)	574, 1501, 1781
ApeKI	GCWGC	6 cut(s)	116, 119, 725, 832, 1115, 1700
ApoI	RAATTY	4 cut(s)	76, 175, 1299, 1519
ArsI	GACNNNNNNTTYG	2 cut(s)	1331, 1363
Asp700I	GAANNNNTTC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	3 cut(s)	341, 1028, 1716
AsuC2I	CCSGG	4 cut(s)	1595, 1596, 1720, 1823
AsuHPI	GGTGA	5 cut(s)	383, 957, 1067, 1718, 1933
AsuII	TTCGAA	1 cut(s)	891
AvaI	CYCGRG	2 cut(s)	1495, 1594
AvaII	GGWCC	3 cut(s)	341, 1028, 1716
BaeI	ACNNNNGTAYC	2 cut(s)	136, 169
BamHI	GGATCC	1 cut(s)	1590
BanI	GGYRCC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	665
Bbv12I	GWGCWC	3 cut(s)	775, 1834, 1876
BbvCI	CCTCAGC	1 cut(s)	1404
BbvI	GCAGC	6 cut(s)	103, 106, 712, 844, 1102, 1712
BccI	CCATC	9 cut(s)	179, 332, 362, 808, 1236, 1366, 1418, 1756, 1862
BciT130I	CCWGG	8 cut(s)	453, 601, 615, 970, 1053, 1322, 1564, 1674
BciVI	GTATCC	2 cut(s)	1079, 1729
BcnI	CCSGG	4 cut(s)	1595, 1596, 1720, 1823
BcoDI	GTCTC	5 cut(s)	686, 785, 899, 1358, 1433
BfaI	CTAG	4 cut(s)	729, 777, 1140, 1152
BfmI	CTRYAG	1 cut(s)	934
BfoI	RGCGCY	1 cut(s)	467
BfuI	GTATCC	2 cut(s)	1079, 1729
BisI	GCNGC	7 cut(s)	30, 117, 120, 726, 833, 1116, 1701
BlsI	GCNGC	7 cut(s)	31, 118, 121, 727, 834, 1117, 1702
Bme18I	GGWCC	3 cut(s)	341, 1028, 1716
BmeT110I	CYCGRG	2 cut(s)	1495, 1594
BmgT120I	GGNCC	3 cut(s)	341, 1028, 1716
BmiI	GGNNCC	6 cut(s)	343, 465, 901, 1039, 1592, 1718
BmrI	ACTGGG	2 cut(s)	779, 1297
BmsI	GCATC	5 cut(s)	323, 343, 365, 868, 1691
BmuI	ACTGGG	2 cut(s)	779, 1297
BoxI	GACNNNNGTC	1 cut(s)	1147
BpiI	GAAGAC	1 cut(s)	665
BplI	GAGNNNNNCTC	4 cut(s)	1768, 1800, 1920, 1952
BpmI	CTGGAG	3 cut(s)	474, 918, 1343
Bpu10I	CCTNAGC	3 cut(s)	297, 1404, 1547
Bpu14I	TTCGAA	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	1860
BpuMI	CCSGG	4 cut(s)	1595, 1596, 1720, 1823
BsaBI	GATNNNNATC	2 cut(s)	1589, 1681
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	2 cut(s)	686, 1433
BsaJI	CCNNGG	7 cut(s)	268, 482, 580, 599, 968, 1073, 1594
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	1569, 1635
Bse1I	ACTGG	3 cut(s)	785, 901, 1292
Bse3DI	GCAATG	2 cut(s)	129, 888
Bse8I	GATNNNNATC	2 cut(s)	1589, 1681
BseBI	CCWGG	8 cut(s)	453, 601, 615, 970, 1053, 1322, 1564, 1674
BseDI	CCNNGG	7 cut(s)	268, 482, 580, 599, 968, 1073, 1594
BseGI	GGATG	7 cut(s)	91, 307, 757, 1377, 1873, 1889, 1914
BseJI	GATNNNNATC	2 cut(s)	1589, 1681
BseLI	CCNNNNNNNGG	2 cut(s)	1569, 1635
BseMI	GCAATG	2 cut(s)	129, 888
BseMII	CTCAG	5 cut(s)	288, 1286, 1395, 1538, 1951
BseNI	ACTGG	3 cut(s)	785, 901, 1292
BseRI	GAGGAG	1 cut(s)	1792
BseXI	GCAGC	6 cut(s)	103, 106, 712, 844, 1102, 1712
BseYI	CCCAGC	2 cut(s)	310, 1454
BshFI	GGCC	3 cut(s)	576, 1503, 1783
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	3 cut(s)	775, 1834, 1876
BsiHKCI	CYCGRG	2 cut(s)	1495, 1594
BsiSI	CCGG	4 cut(s)	35, 1595, 1720, 1822
BslFI	GGGAC	3 cut(s)	327, 455, 1702
BslI	CCNNNNNNNGG	2 cut(s)	1569, 1635
BsmAI	GTCTC	5 cut(s)	686, 785, 899, 1358, 1433
BsmFI	GGGAC	3 cut(s)	327, 455, 1702
BsnI	GGCC	3 cut(s)	576, 1503, 1783
Bso31I	GGTCTC	2 cut(s)	686, 1433
BsoBI	CYCGRG	2 cut(s)	1495, 1594
Bsp119I	TTCGAA	1 cut(s)	891
Bsp1286I	GDGCHC	3 cut(s)	775, 1834, 1876
Bsp143I	GATC	7 cut(s)	493, 607, 1216, 1375, 1590, 1641, 1825
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	4 cut(s)	30, 1458, 1478, 1941
BspANI	GGCC	3 cut(s)	576, 1503, 1783
BspCNI	CTCAG	5 cut(s)	287, 1285, 1396, 1539, 1950
BspHI	TCATGA	1 cut(s)	1834
BspLI	GGNNCC	6 cut(s)	343, 465, 901, 1039, 1592, 1718
BspPI	GGATC	6 cut(s)	488, 602, 1383, 1585, 1598, 1833
BspQI	GCTCTTC	1 cut(s)	1310
BspT104I	TTCGAA	1 cut(s)	891
BspT107I	GGYRCC	1 cut(s)	463
BspTNI	GGTCTC	2 cut(s)	686, 1433
BsrBI	CCGCTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	129, 888
BsrI	ACTGG	3 cut(s)	785, 901, 1292
BssECI	CCNNGG	7 cut(s)	268, 482, 580, 599, 968, 1073, 1594
BssMI	GATC	7 cut(s)	493, 607, 1216, 1375, 1590, 1641, 1825
BssNAI	GTATAC	1 cut(s)	1768
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	4 cut(s)	268, 482, 580, 1073
Bst1107I	GTATAC	1 cut(s)	1768
Bst2UI	CCWGG	8 cut(s)	453, 601, 615, 970, 1053, 1322, 1564, 1674
Bst4CI	ACNGT	9 cut(s)	380, 637, 674, 696, 938, 963, 1028, 1210, 1345
Bst6I	CTCTTC	3 cut(s)	393, 1302, 1310
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstBI	TTCGAA	1 cut(s)	891
BstC8I	GCNNGC	1 cut(s)	1120
BstDEI	CTNAG	8 cut(s)	274, 297, 334, 820, 1272, 1404, 1547, 1937
BstDSI	CCRYGG	1 cut(s)	580
BstEII	GGTNACC	2 cut(s)	200, 1460
BstF5I	GGATG	7 cut(s)	91, 307, 757, 1377, 1873, 1889, 1914
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	7 cut(s)	496, 610, 1219, 1378, 1593, 1644, 1828
BstMAI	GTCTC	5 cut(s)	686, 785, 899, 1358, 1433
BstMBI	GATC	7 cut(s)	493, 607, 1216, 1375, 1590, 1641, 1825
BstMWI	GCNNNNNNNGC	3 cut(s)	998, 1789, 1856
BstNI	CCWGG	8 cut(s)	453, 601, 615, 970, 1053, 1322, 1564, 1674
BstNSI	RCATGY	2 cut(s)	1484, 1854
BstPAI	GACNNNNGTC	1 cut(s)	1147
BstPI	GGTNACC	2 cut(s)	200, 1460
BstSFI	CTRYAG	1 cut(s)	934
BstV1I	GCAGC	6 cut(s)	103, 106, 712, 844, 1102, 1712
BstV2I	GAAGAC	1 cut(s)	665
BstX2I	RGATCY	4 cut(s)	493, 607, 1375, 1590
BstXI	CCANNNNNNTGG	2 cut(s)	1287, 1499
BstYI	RGATCY	4 cut(s)	493, 607, 1375, 1590
BstZ17I	GTATAC	1 cut(s)	1768
BsuI	GTATCC	2 cut(s)	1079, 1729
BsuRI	GGCC	3 cut(s)	576, 1503, 1783
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	7 cut(s)	91, 307, 757, 1377, 1873, 1889, 1914
BtsI	GCAGTG	2 cut(s)	174, 1110
BtsIMutI	CAGTG	2 cut(s)	174, 1110
Cac8I	GCNNGC	1 cut(s)	1120
CaiI	CAGNNNCTG	2 cut(s)	524, 1703
CciI	TCATGA	1 cut(s)	1834
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	341, 1028, 1716
Cfr9I	CCCGGG	1 cut(s)	1594
CsiI	ACCWGGT	1 cut(s)	1562
Csp6I	GTAC	5 cut(s)	381, 1183, 1248, 1410, 1417
CspCI	CAANNNNNGTGG	2 cut(s)	621, 656
CviAII	CATG	7 cut(s)	581, 1421, 1481, 1771, 1835, 1851, 1864
CviQI	GTAC	5 cut(s)	381, 1183, 1248, 1410, 1417
DdeI	CTNAG	8 cut(s)	274, 297, 334, 820, 1272, 1404, 1547, 1937
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	7 cut(s)	495, 609, 1218, 1377, 1592, 1643, 1827
DpnII	GATC	7 cut(s)	493, 607, 1216, 1375, 1590, 1641, 1825
DraI	TTTAAA	2 cut(s)	1195, 1947
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	3 cut(s)	393, 1302, 1310
EarI	CTCTTC	3 cut(s)	393, 1302, 1310
Eco130I	CCWWGG	4 cut(s)	268, 482, 580, 1073
Eco147I	AGGCCT	1 cut(s)	1783
Eco31I	GGTCTC	2 cut(s)	686, 1433
Eco47I	GGWCC	3 cut(s)	341, 1028, 1716
Eco88I	CYCGRG	2 cut(s)	1495, 1594
Eco91I	GGTNACC	2 cut(s)	200, 1460
EcoO109I	RGGNCCY	1 cut(s)	1716
EcoO65I	GGTNACC	2 cut(s)	200, 1460
EcoRI	GAATTC	1 cut(s)	1299
EcoRII	CCWGG	8 cut(s)	451, 599, 613, 968, 1051, 1320, 1562, 1672
EcoT14I	CCWWGG	4 cut(s)	268, 482, 580, 1073
EcoT22I	ATGCAT	2 cut(s)	358, 1684
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
ErhI	CCWWGG	4 cut(s)	268, 482, 580, 1073
FaeI	CATG	7 cut(s)	584, 1424, 1484, 1774, 1838, 1854, 1867
FalI	AAGNNNNNCTT	2 cut(s)	1646, 1678
FaqI	GGGAC	3 cut(s)	327, 455, 1702
FatI	CATG	7 cut(s)	580, 1420, 1480, 1770, 1834, 1850, 1863
FblI	GTMKAC	1 cut(s)	1767
Fnu4HI	GCNGC	7 cut(s)	30, 117, 120, 726, 833, 1116, 1701
FokI	GGATG	7 cut(s)	98, 314, 744, 1384, 1880, 1896, 1921
Fsp4HI	GCNGC	7 cut(s)	30, 117, 120, 726, 833, 1116, 1701
FspBI	CTAG	4 cut(s)	729, 777, 1140, 1152
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	7 cut(s)	30, 117, 120, 726, 833, 1116, 1701
GsaI	CCCAGC	2 cut(s)	314, 1458
GsuI	CTGGAG	3 cut(s)	474, 918, 1343
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	3 cut(s)	576, 1503, 1783
HapII	CCGG	4 cut(s)	35, 1595, 1720, 1822
HhaI	GCGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	7 cut(s)	584, 1424, 1484, 1774, 1838, 1854, 1867
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	5 cut(s)	110, 980, 1270, 1356, 1951
HpaII	CCGG	4 cut(s)	35, 1595, 1720, 1822
HphI	GGTGA	5 cut(s)	383, 957, 1067, 1718, 1933
Hpy166II	GTNNAC	4 cut(s)	1250, 1486, 1605, 1768
Hpy188I	TCNGA	8 cut(s)	51, 184, 352, 493, 565, 979, 1225, 1788
Hpy188III	TCNNGA	5 cut(s)	525, 1304, 1645, 1835, 1906
Hpy8I	GTNNAC	4 cut(s)	1250, 1486, 1605, 1768
Hpy99I	CGWCG	2 cut(s)	14, 17
HpyAV	CCTTC	6 cut(s)	424, 1459, 1514, 1562, 1750, 1754
HpyCH4III	ACNGT	9 cut(s)	380, 637, 674, 696, 938, 963, 1028, 1210, 1345
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	9 cut(s)	82, 122, 356, 421, 832, 881, 1118, 1177, 1682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	998, 1789, 1856
HpyF3I	CTNAG	8 cut(s)	274, 297, 334, 820, 1272, 1404, 1547, 1937
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	7 cut(s)	584, 1424, 1484, 1774, 1838, 1854, 1867
HspAI	GCGC	1 cut(s)	464
KasI	GGCGCC	1 cut(s)	463
Kzo9I	GATC	7 cut(s)	493, 607, 1216, 1375, 1590, 1641, 1825
LguI	GCTCTTC	1 cut(s)	1310
LmnI	GCTCC	6 cut(s)	37, 778, 791, 824, 899, 1400
Lsp1109I	GCAGC	6 cut(s)	103, 106, 712, 844, 1102, 1712
LweI	GCATC	5 cut(s)	323, 343, 365, 868, 1691
MabI	ACCWGGT	1 cut(s)	1562
MaeI	CTAG	4 cut(s)	729, 777, 1140, 1152
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	6 cut(s)	200, 371, 963, 1108, 1460, 1921
MalI	GATC	7 cut(s)	495, 609, 1218, 1377, 1592, 1643, 1827
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	7 cut(s)	493, 607, 1216, 1375, 1590, 1641, 1825
MboII	GAAGA	8 cut(s)	171, 243, 410, 670, 846, 1226, 1319, 1327
MfeI	CAATTG	2 cut(s)	1032, 1145
MflI	RGATCY	4 cut(s)	493, 607, 1375, 1590
MhlI	GDGCHC	3 cut(s)	775, 1834, 1876
Mly113I	GGCGCC	1 cut(s)	464
MlyI	GAGTC	2 cut(s)	1264, 1365
MmeI	TCCRAC	2 cut(s)	769, 1378
Mph1103I	ATGCAT	2 cut(s)	358, 1684
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	6 cut(s)	627, 1080, 1194, 1665, 1754, 1946
MslI	CAYNNNNRTG	3 cut(s)	585, 1497, 1844
MspA1I	CMGCKG	3 cut(s)	1458, 1703, 1941
MspI	CCGG	4 cut(s)	35, 1595, 1720, 1822
MunI	CAATTG	2 cut(s)	1032, 1145
MvaI	CCWGG	8 cut(s)	453, 601, 615, 970, 1053, 1322, 1564, 1674
MwoI	GCNNNNNNNGC	3 cut(s)	998, 1789, 1856
NarI	GGCGCC	1 cut(s)	464
NciI	CCSGG	4 cut(s)	1595, 1596, 1720, 1823
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	7 cut(s)	493, 607, 1216, 1375, 1590, 1641, 1825
NlaIII	CATG	7 cut(s)	584, 1424, 1484, 1774, 1838, 1854, 1867
NlaIV	GGNNCC	6 cut(s)	343, 465, 901, 1039, 1592, 1718
NmeAIII	GCCGAG	1 cut(s)	928
NmuCI	GTSAC	4 cut(s)	371, 963, 1108, 1921
NsiI	ATGCAT	2 cut(s)	358, 1684
NspI	RCATGY	2 cut(s)	1484, 1854
NspV	TTCGAA	1 cut(s)	891
OliI	CACNNNNGTG	1 cut(s)	1497
PagI	TCATGA	1 cut(s)	1834
PceI	AGGCCT	1 cut(s)	1783
PciSI	GCTCTTC	1 cut(s)	1310
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 55, 372
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	110, 980, 1951
PflFI	GACNNNGTC	1 cut(s)	17
PfoI	TCCNGGA	2 cut(s)	451, 1821
PkrI	GCNGC	7 cut(s)	31, 118, 121, 727, 834, 1117, 1702
PleI	GAGTC	2 cut(s)	1264, 1364
PluTI	GGCGCC	1 cut(s)	467
PpsI	GAGTC	2 cut(s)	1264, 1364
PpuMI	RGGWCCY	1 cut(s)	1716
PshAI	GACNNNNGTC	1 cut(s)	1147
Psp5II	RGGWCCY	1 cut(s)	1716
Psp6I	CCWGG	8 cut(s)	451, 599, 613, 968, 1051, 1320, 1562, 1672
PspEI	GGTNACC	2 cut(s)	200, 1460
PspFI	CCCAGC	2 cut(s)	310, 1454
PspGI	CCWGG	8 cut(s)	451, 599, 613, 968, 1051, 1320, 1562, 1672
PspN4I	GGNNCC	6 cut(s)	343, 465, 901, 1039, 1592, 1718
PspPI	GGNCC	3 cut(s)	341, 1028, 1716
PspPPI	RGGWCCY	1 cut(s)	1716
PsrI	GAACNNNNNNTAC	2 cut(s)	499, 531
PstNI	CAGNNNCTG	2 cut(s)	524, 1703
PsuI	RGATCY	4 cut(s)	493, 607, 1375, 1590
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	1703
RsaI	GTAC	5 cut(s)	382, 1184, 1249, 1411, 1418
RsaNI	GTAC	5 cut(s)	381, 1183, 1248, 1410, 1417
RseI	CAYNNNNRTG	3 cut(s)	585, 1497, 1844
SapI	GCTCTTC	1 cut(s)	1310
SaqAI	TTAA	6 cut(s)	627, 1080, 1194, 1665, 1754, 1946
SatI	GCNGC	7 cut(s)	30, 117, 120, 726, 833, 1116, 1701
Sau3AI	GATC	7 cut(s)	493, 607, 1216, 1375, 1590, 1641, 1825
Sau96I	GGNCC	3 cut(s)	341, 1028, 1716
SchI	GAGTC	2 cut(s)	1264, 1365
SduI	GDGCHC	3 cut(s)	775, 1834, 1876
SexAI	ACCWGGT	1 cut(s)	1562
SfaNI	GCATC	5 cut(s)	323, 343, 365, 868, 1691
SfcI	CTRYAG	1 cut(s)	934
SfoI	GGCGCC	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	891
SinI	GGWCC	3 cut(s)	341, 1028, 1716
SmaI	CCCGGG	1 cut(s)	1596
SmiMI	CAYNNNNRTG	3 cut(s)	585, 1497, 1844
SmlI	CTYRAG	1 cut(s)	1875
SmoI	CTYRAG	1 cut(s)	1875
SseBI	AGGCCT	1 cut(s)	1783
SsiI	CCGC	4 cut(s)	30, 1458, 1478, 1941
SspDI	GGCGCC	1 cut(s)	463
SspMI	CTAG	4 cut(s)	729, 777, 1140, 1152
StuI	AGGCCT	1 cut(s)	1783
StyI	CCWWGG	4 cut(s)	268, 482, 580, 1073
TaaI	ACNGT	9 cut(s)	380, 637, 674, 696, 938, 963, 1028, 1210, 1345
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	5 cut(s)	21, 866, 891, 1507, 1577
TaqII	GACCGA	1 cut(s)	668
TatI	WGTACW	2 cut(s)	380, 1182
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	110, 980, 1951
Tru1I	TTAA	6 cut(s)	627, 1080, 1194, 1665, 1754, 1946
Tru9I	TTAA	6 cut(s)	627, 1080, 1194, 1665, 1754, 1946
TscAI	CASTG	2 cut(s)	174, 1117
TseFI	GTSAC	4 cut(s)	371, 963, 1108, 1921
TseI	GCWGC	6 cut(s)	116, 119, 725, 832, 1115, 1700
Tsp45I	GTSAC	4 cut(s)	371, 963, 1108, 1921
TspDTI	ATGAA	5 cut(s)	200, 572, 899, 1182, 1703
TspGWI	ACGGA	1 cut(s)	1404
TspMI	CCCGGG	1 cut(s)	1594
TspRI	CASTG	2 cut(s)	174, 1117
Tth111I	GACNNNGTC	1 cut(s)	17
VpaK11BI	GGWCC	3 cut(s)	341, 1028, 1716
XapI	RAATTY	4 cut(s)	76, 175, 1299, 1519
XceI	RCATGY	2 cut(s)	1484, 1854
XcmI	CCANNNNNNNNNTGG	2 cut(s)	242, 1284
XmaI	CCCGGG	1 cut(s)	1594
XmiI	GTMKAC	1 cut(s)	1767
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	4 cut(s)	729, 777, 1140, 1152
Zsp2I	ATGCAT	2 cut(s)	358, 1684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.