Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004980

Physical Location & Seq

Genomic Coordinates Reverse (-)

29073668 .. 29078653

Gene Structure 4986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G021560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGGATACCGACGACGTTGTCGAGGTCGCCGCTCCGGTTTCTTGCTCTCGGAAATTGCGAAAGAACAAGGAGGTGAATTTGCAGGATGTGATTGAAATTGACAAAGATGATTCTGCTGCTGCAATGTTTATTTATGGGAAAATTGACAGAACTATCAAAGGAAAGGCAGTGGAAAATTCTTCAGATGGTTACCATATTCATCAATCAAAGGAAGCTGTCCTCCATACTTCTGTTGGTTCTTCTGGTGTGGAAACCCTTGGCTCAGTCAATGGAATTGAAATTGCTAAGGATGTTGCCCCAGCATCAAATCACTTTATTGACTTGGATGGTCCCAATTCTGATGCATCTGCTGATGATGTTGATGACTGTACTGATACTTGTTTTGAAGAGTTTGATTATGCCTTCTTGCAATCCCATTTCGATAATGTGGGTATTCCTCCTGGAGTAGAGGCGCCTGTCCCTCATATTCCTTGGTTGTCAGATCCTCCTAAAAGTAATGTAAGTTCAGTTTCTGGAAGTAGTTCTGTTGATACAAGGTATCAAATGAAATCAGATTATGTTGGCCTCCATGGAAATGAGCTGTTTCCCTGGACAGATCCTCCTAGTTTCAACTTTAAGCCAACCGTTGTGGGTAGTTCAAGCTTGAAGACCCAAACAGACAGTATCGGTCACCCAAATGGACAGTACCAGTCATCTTGGAAACTTCCAAAAGCTGCTAGAAGCAGAAAGAAACAATCTGCTTCACATCCCCAAGTTAGTGCTCCTAGTCTCCCAGTTGGAGCAGAACCATCAAAATCTCAAAGGCTCTTAGGAGCTTTGCAGCGTAAAAAGAAGCTATTTTCTTCAAGTAGTTCGACTAATTATGATGCAATGAAGTTCGATACTGGAGCCGAGACATCTTTTTTTGGACATAATTTACCCTACAGTCCAATTTATCCTCATGGATTACAGTCACCCTGGTTGTCAGATTCTTTGTCAGCAATTAGTGCTAAACCAAATCATTCAAGTTTCTATGGTCCAATTGGTTCCATATACCCTCCTGGAGAGTTAGTAGGTATCCCTTGGGTTAAGGGTGTTTCCCAAACTCAACACAATGTCACTGCTGCAAGCCTTTCAACAACCCCTGCTAGACAATTGTCTAGCAAGGAAATAGATGAAATTATGCAGAAGTACAAGGGTTTTAAACAATTTGATACAGTTGAAGATCATTCAGACCATCACTATATACTCTCTGGTACACTCAACGGTAATTCAATGACTCAGCCACCAAAGAACTGGGCAAAGAGAATTCAGGAAGAGTGGAAGAGCCTGGAGAAAGATTTGCCTGACACAGTATTTGTTAGAGTCTATGAGACAAGGATGGATCTTTTGAGAGCTGTAATTGTTGGAGCTGAGGGTACTCCTTACCATGATGGTCTCTTTTTCTTTGATGTTTCCTTCCCCAGTGGTTACCCCAATGTGCCACCGCATGTCCACTACCACTCGGGTGGCCTTCGACTAAATCCAAATTTGTATGGTTGTGGAAAAGTATGCCTCAGCCTTCTCAACACCTGGTCTGGGAACTCGAAAGAGATGTGGATCCCGGGTGTGTCCACCATTCTACAAGTTTTAGTGTCCATACAAGGGCTGATCTTGAATACAAAGCCCTACTTTAATGAGCCTGGATATGCATCTATGAATGGTTCAGCAGCTGGTGAAACAAGGTCCCGGCAGTATAATGAGGATACCTTCCTCCTATCTTTAACAACGATGGTATACATGATGAGGAGGCCTCCGAAGCATTTTGAGGATTTTGTTGTGGGGCATTTCCGGGATCGTGCTCATGACATTCTGGTGGCATGTAAAGCATACATGGATGGTGCTCAAGTGGGATGTCTGGTCAAAGGTGGGGTTCAGGATGTTGATGAGGGTGACAAGAGTTGTTCTCAGCGGTTTAAGGATTCTTTAGCAGGGCACATGCCGATGCTTGTCAAAGAGTTTACAAATATAGGTGTCAAGGATTGCGAGAAATATGTATCAGCAGCTGTAAATGGGAACGAGCAGATTGGTAGTATGCCGCAGGCTGCAACATCAATGGTTTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

695

Amino Acids

76.1

Weight (kDa)

5.94

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	429 - 550	1.4e-21	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15355
fragaria_vesca	FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000 FvH4_3g20000
malus_domestica	MD03G1227200.v1.1 MD11G1246700.v1.1
prunus_persica	Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1 Prupe.4G181600_v2.0.a1
pyrus_communis	pycom03g17490 pycom11g21880
rosa_chinensis	RchiOBHm_Chr5g0033831
rosa_laevigata	RLG00000033504
rosa_multiflora	Rmu_co8216886.1_g000001 Rmu_co8329207.1_g000001 Rmu_sc0001768.1_g000061 Rmu_sc0008210.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046350
rosa_rugosa	Rorug05G0142600 Rorug05G0142700.1 Rorug05G0142800
rosa_samantha	Rh5AG233600 Rh5BG234100 Rh5CG264200 Rh5DG240900
rosa_wichuraiana	Rw5G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	451
AccBSI	CCGCTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	1755
AciI	CCGC	4 cut(s)	30, 1466, 1930, 2057
AclWI	GGATC	6 cut(s)	476, 590, 1371, 1573, 1586, 1821
AcsI	RAATTY	4 cut(s)	76, 175, 1287, 1507
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	452
AfaI	GTAC	5 cut(s)	370, 686, 1172, 1237, 1399
AfiI	CCNNNNNNNGG	2 cut(s)	1557, 1623
AjnI	CCWGG	7 cut(s)	439, 587, 956, 1039, 1308, 1550, 1660
AleI	CACNNNNGTG	1 cut(s)	1485
Alw21I	GWGCWC	3 cut(s)	763, 1822, 1864
Alw26I	GTCTC	4 cut(s)	773, 887, 1346, 1421
AlwI	GGATC	6 cut(s)	476, 590, 1371, 1573, 1586, 1821
AlwNI	CAGNNNCTG	3 cut(s)	512, 1691, 2024
Ama87I	CYCGRG	2 cut(s)	1483, 1582
AoxI	GGCC	3 cut(s)	562, 1489, 1769
ApeKI	GCWGC	8 cut(s)	116, 119, 713, 820, 1103, 1688, 2021, 2063
ApoI	RAATTY	4 cut(s)	76, 175, 1287, 1507
ArsI	GACNNNNNNTTYG	2 cut(s)	1319, 1351
Asp700I	GAANNNNTTC	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	3 cut(s)	329, 1016, 1704
AsuC2I	CCSGG	4 cut(s)	1583, 1584, 1708, 1811
AsuHPI	GGTGA	5 cut(s)	85, 662, 945, 1706, 1922
AvaI	CYCGRG	2 cut(s)	1483, 1582
AvaII	GGWCC	3 cut(s)	329, 1016, 1704
BaeGI	GKGCMC	1 cut(s)	1956
BamHI	GGATCC	1 cut(s)	1578
BanI	GGYRCC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	653
Bbv12I	GWGCWC	3 cut(s)	763, 1822, 1864
BbvCI	CCTCAGC	2 cut(s)	1392, 1535
BbvI	GCAGC	8 cut(s)	103, 106, 700, 832, 1090, 1700, 2033, 2050
BccI	CCATC	8 cut(s)	179, 320, 796, 1224, 1354, 1406, 1744, 1850
BciT130I	CCWGG	7 cut(s)	441, 589, 958, 1041, 1310, 1552, 1662
BciVI	GTATCC	2 cut(s)	1067, 1717
BcnI	CCSGG	4 cut(s)	1583, 1584, 1708, 1811
BcoDI	GTCTC	4 cut(s)	773, 887, 1346, 1421
BfaI	CTAG	5 cut(s)	603, 717, 765, 1128, 1140
BfmI	CTRYAG	1 cut(s)	922
BfoI	RGCGCY	1 cut(s)	455
BfuI	GTATCC	2 cut(s)	1067, 1717
Bme18I	GGWCC	3 cut(s)	329, 1016, 1704
BmeT110I	CYCGRG	2 cut(s)	1483, 1582
BmgT120I	GGNCC	3 cut(s)	329, 1016, 1704
BmiI	GGNNCC	6 cut(s)	331, 453, 889, 1027, 1580, 1706
BmrI	ACTGGG	3 cut(s)	767, 1285, 1437
BmsI	GCATC	6 cut(s)	311, 331, 353, 856, 1679, 1953
BmuI	ACTGGG	3 cut(s)	767, 1285, 1437
BoxI	GACNNNNGTC	1 cut(s)	1135
BpiI	GAAGAC	1 cut(s)	653
BplI	GAGNNNNNCTC	4 cut(s)	1756, 1788, 1909, 1941
BpmI	CTGGAG	4 cut(s)	462, 906, 1062, 1331
Bpu10I	CCTNAGC	3 cut(s)	285, 1392, 1535
BpuEI	CTTGAG	1 cut(s)	1848
BpuMI	CCSGG	4 cut(s)	1583, 1584, 1708, 1811
BsaBI	GATNNNNATC	2 cut(s)	1577, 1669
BsaHI	GRCGYC	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	1421
BsaJI	CCNNGG	7 cut(s)	256, 470, 568, 587, 956, 1061, 1582
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	4 cut(s)	583, 613, 1035, 1065
Bsc4I	CCNNNNNNNGG	2 cut(s)	1557, 1623
Bse1I	ACTGG	5 cut(s)	688, 773, 889, 1280, 1443
Bse3DI	GCAATG	2 cut(s)	129, 876
Bse8I	GATNNNNATC	2 cut(s)	1577, 1669
BseBI	CCWGG	7 cut(s)	441, 589, 958, 1041, 1310, 1552, 1662
BseDI	CCNNGG	7 cut(s)	256, 470, 568, 587, 956, 1061, 1582
BseGI	GGATG	8 cut(s)	91, 295, 331, 745, 1365, 1861, 1877, 1903
BseJI	GATNNNNATC	2 cut(s)	1577, 1669
BseLI	CCNNNNNNNGG	2 cut(s)	1557, 1623
BseMI	GCAATG	2 cut(s)	129, 876
BseMII	CTCAG	5 cut(s)	276, 1274, 1383, 1549, 1940
BseNI	ACTGG	5 cut(s)	688, 773, 889, 1280, 1443
BseRI	GAGGAG	1 cut(s)	1780
BseSI	GKGCMC	1 cut(s)	1956
BseXI	GCAGC	8 cut(s)	103, 106, 700, 832, 1090, 1700, 2033, 2050
BseYI	CCCAGC	1 cut(s)	298
BshFI	GGCC	3 cut(s)	564, 1491, 1771
BshNI	GGYRCC	1 cut(s)	451
BsiHKAI	GWGCWC	3 cut(s)	763, 1822, 1864
BsiHKCI	CYCGRG	2 cut(s)	1483, 1582
BsiSI	CCGG	4 cut(s)	35, 1583, 1708, 1810
BslFI	GGGAC	3 cut(s)	315, 443, 1690
BslI	CCNNNNNNNGG	2 cut(s)	1557, 1623
BsmAI	GTCTC	4 cut(s)	773, 887, 1346, 1421
BsmFI	GGGAC	3 cut(s)	315, 443, 1690
BsnI	GGCC	3 cut(s)	564, 1491, 1771
Bso31I	GGTCTC	1 cut(s)	1421
BsoBI	CYCGRG	2 cut(s)	1483, 1582
Bsp1286I	GDGCHC	4 cut(s)	763, 1822, 1864, 1956
Bsp143I	GATC	7 cut(s)	481, 595, 1204, 1363, 1578, 1629, 1813
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	4 cut(s)	30, 1466, 1930, 2057
BspANI	GGCC	3 cut(s)	564, 1491, 1771
BspCNI	CTCAG	5 cut(s)	275, 1273, 1384, 1548, 1939
BspHI	TCATGA	1 cut(s)	1822
BspLI	GGNNCC	6 cut(s)	331, 453, 889, 1027, 1580, 1706
BspPI	GGATC	6 cut(s)	476, 590, 1371, 1573, 1586, 1821
BspQI	GCTCTTC	1 cut(s)	1298
BspT107I	GGYRCC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	1421
BsrBI	CCGCTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	129, 876
BsrI	ACTGG	5 cut(s)	688, 773, 889, 1280, 1443
BssECI	CCNNGG	7 cut(s)	256, 470, 568, 587, 956, 1061, 1582
BssMI	GATC	7 cut(s)	481, 595, 1204, 1363, 1578, 1629, 1813
BssNAI	GTATAC	1 cut(s)	1756
BssNI	GRCGYC	1 cut(s)	452
BssT1I	CCWWGG	4 cut(s)	256, 470, 568, 1061
Bst1107I	GTATAC	1 cut(s)	1756
Bst2UI	CCWGG	7 cut(s)	441, 589, 958, 1041, 1310, 1552, 1662
Bst4CI	ACNGT	9 cut(s)	368, 625, 662, 684, 926, 951, 1198, 1247, 1333
Bst6I	CTCTTC	3 cut(s)	381, 1290, 1298
BstACI	GRCGYC	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstC8I	GCNNGC	2 cut(s)	1108, 2061
BstDEI	CTNAG	7 cut(s)	262, 285, 808, 1260, 1392, 1535, 1926
BstDSI	CCRYGG	1 cut(s)	568
BstEII	GGTNACC	3 cut(s)	188, 668, 1448
BstF5I	GGATG	8 cut(s)	91, 295, 331, 745, 1365, 1861, 1877, 1903
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	7 cut(s)	484, 598, 1207, 1366, 1581, 1632, 1816
BstMAI	GTCTC	4 cut(s)	773, 887, 1346, 1421
BstMBI	GATC	7 cut(s)	481, 595, 1204, 1363, 1578, 1629, 1813
BstMWI	GCNNNNNNNGC	3 cut(s)	986, 1777, 1844
BstNI	CCWGG	7 cut(s)	441, 589, 958, 1041, 1310, 1552, 1662
BstNSI	RCATGY	3 cut(s)	1472, 1842, 1960
BstPAI	GACNNNNGTC	1 cut(s)	1135
BstPI	GGTNACC	3 cut(s)	188, 668, 1448
BstSFI	CTRYAG	1 cut(s)	922
BstSLI	GKGCMC	1 cut(s)	1956
BstV1I	GCAGC	8 cut(s)	103, 106, 700, 832, 1090, 1700, 2033, 2050
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	4 cut(s)	481, 595, 1363, 1578
BstXI	CCANNNNNNTGG	2 cut(s)	1275, 1487
BstYI	RGATCY	4 cut(s)	481, 595, 1363, 1578
BstZ17I	GTATAC	1 cut(s)	1756
BsuI	GTATCC	2 cut(s)	1067, 1717
BsuRI	GGCC	3 cut(s)	564, 1491, 1771
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	8 cut(s)	91, 295, 331, 745, 1365, 1861, 1877, 1903
BtsI	GCAGTG	2 cut(s)	174, 1098
BtsIMutI	CAGTG	3 cut(s)	174, 1098, 1450
Cac8I	GCNNGC	2 cut(s)	1108, 2061
CaiI	CAGNNNCTG	3 cut(s)	512, 1691, 2024
CciI	TCATGA	1 cut(s)	1822
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	329, 1016, 1704
Cfr9I	CCCGGG	1 cut(s)	1582
CsiI	ACCWGGT	1 cut(s)	1550
Csp6I	GTAC	5 cut(s)	369, 685, 1171, 1236, 1398
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviQI	GTAC	5 cut(s)	369, 685, 1171, 1236, 1398
DdeI	CTNAG	7 cut(s)	262, 285, 808, 1260, 1392, 1535, 1926
DinI	GGCGCC	1 cut(s)	453
DpnI	GATC	7 cut(s)	483, 597, 1206, 1365, 1580, 1631, 1815
DpnII	GATC	7 cut(s)	481, 595, 1204, 1363, 1578, 1629, 1813
DraI	TTTAAA	1 cut(s)	1183
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	3 cut(s)	381, 1290, 1298
EarI	CTCTTC	3 cut(s)	381, 1290, 1298
Eco130I	CCWWGG	4 cut(s)	256, 470, 568, 1061
Eco147I	AGGCCT	1 cut(s)	1771
Eco31I	GGTCTC	1 cut(s)	1421
Eco47I	GGWCC	3 cut(s)	329, 1016, 1704
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	2 cut(s)	1483, 1582
Eco91I	GGTNACC	3 cut(s)	188, 668, 1448
EcoO109I	RGGNCCY	1 cut(s)	1704
EcoO65I	GGTNACC	3 cut(s)	188, 668, 1448
EcoRI	GAATTC	1 cut(s)	1287
EcoRII	CCWGG	7 cut(s)	439, 587, 956, 1039, 1308, 1550, 1660
EcoT14I	CCWWGG	4 cut(s)	256, 470, 568, 1061
EcoT22I	ATGCAT	2 cut(s)	346, 1672
EgeI	GGCGCC	1 cut(s)	453
EheI	GGCGCC	1 cut(s)	453
ErhI	CCWWGG	4 cut(s)	256, 470, 568, 1061
FalI	AAGNNNNNCTT	2 cut(s)	1634, 1666
FaqI	GGGAC	3 cut(s)	315, 443, 1690
FblI	GTMKAC	1 cut(s)	1755
FokI	GGATG	8 cut(s)	98, 302, 338, 732, 1372, 1868, 1884, 1910
FspBI	CTAG	5 cut(s)	603, 717, 765, 1128, 1140
GlaI	GCGC	1 cut(s)	453
GsaI	CCCAGC	1 cut(s)	302
GsuI	CTGGAG	4 cut(s)	462, 906, 1062, 1331
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	564, 1491, 1771
HapII	CCGG	4 cut(s)	35, 1583, 1708, 1810
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	1 cut(s)	452
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	5 cut(s)	110, 968, 1258, 1344, 1940
HpaII	CCGG	4 cut(s)	35, 1583, 1708, 1810
HphI	GGTGA	5 cut(s)	85, 662, 945, 1706, 1922
Hpy166II	GTNNAC	5 cut(s)	1238, 1474, 1593, 1756, 1980
Hpy188I	TCNGA	8 cut(s)	51, 184, 340, 481, 553, 967, 1213, 1776
Hpy188III	TCNNGA	5 cut(s)	513, 1292, 1633, 1823, 1895
Hpy8I	GTNNAC	5 cut(s)	1238, 1474, 1593, 1756, 1980
Hpy99I	CGWCG	2 cut(s)	14, 17
HpyAV	CCTTC	5 cut(s)	412, 1447, 1502, 1550, 1738
HpyCH4III	ACNGT	9 cut(s)	368, 625, 662, 684, 926, 951, 1198, 1247, 1333
HpyCH4IV	ACGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	3 cut(s)	986, 1777, 1844
HpyF3I	CTNAG	7 cut(s)	262, 285, 808, 1260, 1392, 1535, 1926
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	452
HspAI	GCGC	1 cut(s)	452
KasI	GGCGCC	1 cut(s)	451
Kzo9I	GATC	7 cut(s)	481, 595, 1204, 1363, 1578, 1629, 1813
LguI	GCTCTTC	1 cut(s)	1298
LmnI	GCTCC	6 cut(s)	37, 766, 779, 812, 887, 1388
Lsp1109I	GCAGC	8 cut(s)	103, 106, 700, 832, 1090, 1700, 2033, 2050
LweI	GCATC	6 cut(s)	311, 331, 353, 856, 1679, 1953
MabI	ACCWGGT	1 cut(s)	1550
MaeI	CTAG	5 cut(s)	603, 717, 765, 1128, 1140
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	6 cut(s)	188, 668, 951, 1096, 1448, 1910
MalI	GATC	7 cut(s)	483, 597, 1206, 1365, 1580, 1631, 1815
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	7 cut(s)	481, 595, 1204, 1363, 1578, 1629, 1813
MboII	GAAGA	8 cut(s)	171, 231, 398, 658, 834, 1214, 1307, 1315
MfeI	CAATTG	2 cut(s)	1020, 1133
MflI	RGATCY	4 cut(s)	481, 595, 1363, 1578
MhlI	GDGCHC	4 cut(s)	763, 1822, 1864, 1956
Mly113I	GGCGCC	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	1252, 1353
MmeI	TCCRAC	2 cut(s)	757, 1366
Mph1103I	ATGCAT	2 cut(s)	346, 1672
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	6 cut(s)	615, 1068, 1182, 1653, 1742, 1935
MslI	CAYNNNNRTG	5 cut(s)	573, 675, 1485, 1832, 1961
MspA1I	CMGCKG	3 cut(s)	1691, 1930, 2024
MspI	CCGG	4 cut(s)	35, 1583, 1708, 1810
MunI	CAATTG	2 cut(s)	1020, 1133
MvaI	CCWGG	7 cut(s)	441, 589, 958, 1041, 1310, 1552, 1662
MwoI	GCNNNNNNNGC	3 cut(s)	986, 1777, 1844
NarI	GGCGCC	1 cut(s)	452
NciI	CCSGG	4 cut(s)	1583, 1584, 1708, 1811
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	7 cut(s)	481, 595, 1204, 1363, 1578, 1629, 1813
NlaIV	GGNNCC	6 cut(s)	331, 453, 889, 1027, 1580, 1706
NmeAIII	GCCGAG	1 cut(s)	916
NmuCI	GTSAC	4 cut(s)	668, 951, 1096, 1910
NsiI	ATGCAT	2 cut(s)	346, 1672
NspI	RCATGY	3 cut(s)	1472, 1842, 1960
OliI	CACNNNNGTG	1 cut(s)	1485
PagI	TCATGA	1 cut(s)	1822
PceI	AGGCCT	1 cut(s)	1771
PciSI	GCTCTTC	1 cut(s)	1298
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 55
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	110, 968, 1940
PflFI	GACNNNGTC	1 cut(s)	17
PfoI	TCCNGGA	3 cut(s)	439, 1039, 1809
PleI	GAGTC	2 cut(s)	1252, 1352
PluTI	GGCGCC	1 cut(s)	455
PpsI	GAGTC	2 cut(s)	1252, 1352
PpuMI	RGGWCCY	1 cut(s)	1704
PshAI	GACNNNNGTC	1 cut(s)	1135
Psp5II	RGGWCCY	1 cut(s)	1704
Psp6I	CCWGG	7 cut(s)	439, 587, 956, 1039, 1308, 1550, 1660
PspEI	GGTNACC	3 cut(s)	188, 668, 1448
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	7 cut(s)	439, 587, 956, 1039, 1308, 1550, 1660
PspN4I	GGNNCC	6 cut(s)	331, 453, 889, 1027, 1580, 1706
PspPI	GGNCC	3 cut(s)	329, 1016, 1704
PspPPI	RGGWCCY	1 cut(s)	1704
PsrI	GAACNNNNNNTAC	2 cut(s)	487, 519
PstNI	CAGNNNCTG	3 cut(s)	512, 1691, 2024
PsuI	RGATCY	4 cut(s)	481, 595, 1363, 1578
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	1691, 2024
RsaI	GTAC	5 cut(s)	370, 686, 1172, 1237, 1399
RsaNI	GTAC	5 cut(s)	369, 685, 1171, 1236, 1398
RseI	CAYNNNNRTG	5 cut(s)	573, 675, 1485, 1832, 1961
SapI	GCTCTTC	1 cut(s)	1298
SaqAI	TTAA	6 cut(s)	615, 1068, 1182, 1653, 1742, 1935
Sau3AI	GATC	7 cut(s)	481, 595, 1204, 1363, 1578, 1629, 1813
Sau96I	GGNCC	3 cut(s)	329, 1016, 1704
SchI	GAGTC	2 cut(s)	1252, 1353
SduI	GDGCHC	4 cut(s)	763, 1822, 1864, 1956
SexAI	ACCWGGT	1 cut(s)	1550
SfaNI	GCATC	6 cut(s)	311, 331, 353, 856, 1679, 1953
SfcI	CTRYAG	1 cut(s)	922
SfoI	GGCGCC	1 cut(s)	453
SinI	GGWCC	3 cut(s)	329, 1016, 1704
SmaI	CCCGGG	1 cut(s)	1584
SmiMI	CAYNNNNRTG	5 cut(s)	573, 675, 1485, 1832, 1961
SmlI	CTYRAG	1 cut(s)	1863
SmoI	CTYRAG	1 cut(s)	1863
SseBI	AGGCCT	1 cut(s)	1771
SsiI	CCGC	4 cut(s)	30, 1466, 1930, 2057
SspDI	GGCGCC	1 cut(s)	451
SspMI	CTAG	5 cut(s)	603, 717, 765, 1128, 1140
StuI	AGGCCT	1 cut(s)	1771
StyI	CCWWGG	4 cut(s)	256, 470, 568, 1061
TaaI	ACNGT	9 cut(s)	368, 625, 662, 684, 926, 951, 1198, 1247, 1333
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	6 cut(s)	21, 420, 854, 879, 1495, 1565
TaqII	GACCGA	1 cut(s)	656
TatI	WGTACW	2 cut(s)	368, 1170
TauI	GCSGC	2 cut(s)	32, 2059
TfiI	GAWTC	3 cut(s)	110, 968, 1940
Tru1I	TTAA	6 cut(s)	615, 1068, 1182, 1653, 1742, 1935
Tru9I	TTAA	6 cut(s)	615, 1068, 1182, 1653, 1742, 1935
TscAI	CASTG	3 cut(s)	174, 1105, 1450
TseFI	GTSAC	4 cut(s)	668, 951, 1096, 1910
TseI	GCWGC	8 cut(s)	116, 119, 713, 820, 1103, 1688, 2021, 2063
Tsp45I	GTSAC	4 cut(s)	668, 951, 1096, 1910
TspDTI	ATGAA	6 cut(s)	188, 560, 887, 1170, 1691, 2070
TspMI	CCCGGG	1 cut(s)	1582
TspRI	CASTG	3 cut(s)	174, 1105, 1450
Tth111I	GACNNNGTC	1 cut(s)	17
VpaK11BI	GGWCC	3 cut(s)	329, 1016, 1704
XapI	RAATTY	4 cut(s)	76, 175, 1287, 1507
XceI	RCATGY	3 cut(s)	1472, 1842, 1960
XcmI	CCANNNNNNNNNTGG	2 cut(s)	230, 1272
XmaI	CCCGGG	1 cut(s)	1582
XmiI	GTMKAC	1 cut(s)	1755
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	5 cut(s)	603, 717, 765, 1128, 1140
Zsp2I	ATGCAT	2 cut(s)	346, 1672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.