Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8241265.1

Orthogroup ID

OG0004564

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 525

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8241265.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 455 bp

atgctaacatctgtctcttgggtgtgttggattcgacccaattctattctagttaaccagctgggttctggcatgaaaggccttggaatcggttcttttgggattgagtggtctgctattgcagcataccttgctactcctttggctagcccgtggttagccacagccaacattgctgttggatttttctttgtcatgtatgtgatgacacccatcacttactggtctaatatctacagcgccaagacattcccaatattttctagcaaattgttcatggctaatggttcaagatacgaggtcctcgatatcattgattccaggtttcaacttgatcatggcgaatatgcaaagaaggggcctctgcatatgagtaccttttttgcttttacttacggtcttggatttgccactctttctgctacagttatgcatgttctactttttaatgcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0015833 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0022857 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

151

Amino Acids

16.71

Weight (kDa)

8.76

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27730 AT5G53510 AT5G53520
fragaria_vesca	FvH4_7g32230
malus_domestica	MD07G1295600.v1.1
prunus_persica	Prupe.2G315100_v2.0.a1
pyrus_communis	pycom07g26830
rosa_chinensis	RchiOBHm_Chr1g0381901 RchiOBHm_Chr1g0381921
rosa_laevigata	RLG00000026200 RLG00000026201
rosa_multiflora	Rmu_co8241265.1_g000001 Rmu_co8483163.1_g000001 Rmu_sc0010238.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278340 Rroxscaffold_4G00278350
rosa_rugosa	Rorug01G0432100 Rorug01G0432200
rosa_samantha	Rh1AG455200 Rh1AG455400 Rh1BG412400 Rh1BG412600 Rh1CG427100 Rh1CG427400 Rh1DG444700 Rh1DG444900
rosa_wichuraiana	Rw1G039710 Rw1G041370 Rw1G041380 Rw1G041470 Rw1G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	291, 329
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	79, 359
ApeKI	GCWGC	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	301, 359
AsuNHI	GCTAGC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	322
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	3 cut(s)	50, 147, 264
BfmI	CTRYAG	2 cut(s)	235, 423
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	301, 359
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	322
BmtI	GCTAGC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	82, 152
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	82, 152
BseMI	GCAATG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	81, 361
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	81, 361
Bsp143I	GATC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	81, 361
BspLI	GGNNCC	1 cut(s)	360
BspOI	GCTAGC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	82, 152
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	398, 427
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 122, 131, 173
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	2 cut(s)	235, 423
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	81, 361
BtgI	CCRYGG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	301, 359
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	5 cut(s)	73, 196, 277, 338, 434
CviJI	RGCY	8 cut(s)	61, 81, 146, 150, 161, 167, 281, 361
CviKI_1	RGCY	8 cut(s)	61, 81, 146, 150, 161, 167, 281, 361
CviQI	GTAC	1 cut(s)	375
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	301
EcoO109I	RGGNCCY	2 cut(s)	301, 359
EcoRII	CCWGG	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	76, 199, 280, 341, 437
FatI	CATG	5 cut(s)	72, 195, 276, 337, 433
FauNDI	CATATG	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	3 cut(s)	50, 147, 264
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	81, 361
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	5 cut(s)	76, 199, 280, 341, 437
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	31, 87, 317
HpaI	GTTAAC	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	291
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	398, 427
HpyCH4V	TGCA	5 cut(s)	122, 350, 367, 433, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 122, 131, 173
Hsp92II	CATG	5 cut(s)	76, 199, 280, 341, 437
HspAI	GCGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	334
LpnPI	CCDG	6 cut(s)	47, 54, 71, 208, 307, 334
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	3 cut(s)	50, 147, 264
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MluCI	AATT	2 cut(s)	40, 269
MmeI	TCCRAC	2 cut(s)	8, 160
MnlI	CCTC	3 cut(s)	292, 314, 372
Mph1103I	ATGCAT	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	91
MseI	TTAA	2 cut(s)	54, 447
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	4 cut(s)	78, 122, 131, 173
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	1 cut(s)	334
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	5 cut(s)	76, 199, 280, 341, 437
NlaIV	GGNNCC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	1 cut(s)	437
PceI	AGGCCT	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	31, 87, 317
PkrI	GCNGC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	301
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	301, 359
PspPPI	RGGWCCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	54, 447
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	2 cut(s)	301, 359
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	5 cut(s)	63, 132, 303, 326, 380
SfcI	CTRYAG	2 cut(s)	235, 423
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	40, 269
SseBI	AGGCCT	1 cut(s)	81
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	3 cut(s)	50, 147, 264
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	398, 427
TaqI	TCGA	2 cut(s)	34, 306
TasI	AATT	2 cut(s)	40, 269
TfiI	GAWTC	3 cut(s)	31, 87, 317
Tru1I	TTAA	2 cut(s)	54, 447
Tru9I	TTAA	2 cut(s)	54, 447
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	89, 265
VpaK11BI	GGWCC	1 cut(s)	301
XceI	RCATGY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	91
XspI	CTAG	3 cut(s)	50, 147, 264
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.