Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004564

Physical Location & Seq

Genomic Coordinates Reverse (-)

68250452 .. 68254127

Gene Structure 3676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G041380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGGTCCATCAAATCCTCAGTCTACACAATAATAGAATCATGGAGATAGATAATAGTACTGCTGTAAAGATTGAGCAGGAAGATGAGCGCTCTGTCATTGAGCAAGTGGAGTTGACAGTGCCAAAAACCGATGACCCTACCTTGCCGGTGCTCACATTCCGAATGTGGGTTCTGGGTTTGGTCTCATGTGTCCTTCTCTCCTTTGTGAACCAGTTTTTCTGGTACAGGACTCAGCCGTTGACTGTGTCATCCATCAGTGCACAGATTGCTGTGGTGCCAGTCGGACATTTCATGGCGAGAGTGCTGCCCACACGCCGTTTTTTCCAAGGTACTCGGTTTGAGTTCACCATGAATCCGGGGCCTTTTAATGTCAAGGAACATGTTTTGATCACTATATTTGCGAATTGCGGGGCTGGAACTGTTTATGCTACTCATATCTTGACTGCTGTTAAGATCTTCTACAAGAGGAAGCTCACTTTTCTTCCTGCCTTTATTGTTATGCTCACCACTCAGGTGTTGGGGTTTGGTTGGGCTGGAATTTTCAGAAAATATCTGGTTGAGCCAGAGAAGATGTGGTGGCCCGGTAATCTGGTTCAGGTTTCATTGTTCAGTGCTCTGCATGAGAAGAGCAAAAGGACTAAAGGAAGCATGACTCGTACCCAGTTCTTCCTCCTAGTGATGATTGCCAGTTTTGCTTACTATATCTTCCCTGGCTATCTTTTCATCATGCTAACATCTGTCTCTTGGGTGTGTTGGATTCGACCCAATTCTATTCTAGTTAACCAGCTGGGTTCTGGCATGAATGGCCTTGGAATCGGTTCTTTTGGGATTGACTGGTCTACTATTTCAGCATATCTTGGTACTCCTTTGGCTAGCCCATGGTTCGCCTCGGCCAACATTGCTGTTGGATTTTCGTTGTCATGTATCGCCAAGACATTCCCAATATTTTCTAGCCATTTGTTCATGGCTAATGGTTCAAGATACGAGGTCCTCGATATCATTGGTTCCAGTTTTCAACTTGATCGCGGTGAATATGCCAAGAAAGGGCCTCTGCATATGAGCACCTTTTTCGCTTTTACTTATGGTCTTGGATTTGCCGCACTTTCTGCTACAATTATGCATGTTCTACTTTTTCATGCAAGGGATATACTGGACTCGTTTCATGGAAATAAGAAAAAGGATGTCCATGCAAGGCTTATGAAGAATTACAAATTGGTGCCAACATTGTGGTTTATCCTCATCCTTGCGATCAATATTGCTCTTATCCTGTTTGCTTGTGTGTATTACAAGGAGTCACTTCAATTGCCTTGGTGGGGTGCATTGCTTGCTTGTTTCATGGCCTTTGCTTTCACATACCCAATCGGTGTCATCTATGCCACAACAAACATGGAACCAGGTTTGAATATTATCACAGAATATGTGATTGGATACCTTTACCCTGAGCACCCTGTAGCCAACATGTGCTTCAAAGTGTATGGTTACATAAGTATGGTACAAGCTCTATCATTTGTGTCGGACTTTAAGCTCGGTCACTACATGAAGATTCCTCCAAGAGCAATGTTCACAGCACAGATGTGCACAGCGTGGTGGCTGATGGCAGACATTCAGAACCTCTGTGATACCTCCCTGCTGCCAGCGGATAGCCCTTGGACCTGTCCAATGGACCGTGTGTTCTTTGATGCGTCTGTTATCTGGGGTCTCGTCGGACCCCGCAGAATTTTTGGAAACCTTGGTGAATACAGTAACGTCAACTGGTTTTTCCTTGGTGGTGCCATTGCCCCGGTGCTTGTTTGGCTTGCTCACAGGATATTTCCCAAACAAAAATGGATTCTTGCTGTTAACATGCCTGTCTTGCTAGGTGCCACAGGAATGATGCCCCCTGCCAGTGCTATAAACTTTACAAGTTGGATATTTTTGGCATTTGTTTCGGGTTTTGTTGTCTTCAGGTACCGGCAAGATTTGTGGAAGAAGTATAACTATGTTGTCTCTGGTGGTCTTGATGCCGGAACTGCCTTTGTTACAATATTGGTGTTCCTTACCTTGCAGTCCCAGAACATTAATCTCGACTGGTGGGGGAATAAAGGAGAGCCCTGCCCCTTGGCTACATGCCCTACCGCCAAAGGGGTTGTAGTTGCTGGCTGCCCGGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0015833 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0022857 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

717

Amino Acids

80.69

Weight (kDa)

9.13

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	51 - 679	3.5e-156	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27730 AT5G53510 AT5G53520
fragaria_vesca	FvH4_7g32230
malus_domestica	MD07G1295600.v1.1
prunus_persica	Prupe.2G315100_v2.0.a1
pyrus_communis	pycom07g26830
rosa_chinensis	RchiOBHm_Chr1g0381901 RchiOBHm_Chr1g0381921
rosa_laevigata	RLG00000026200 RLG00000026201
rosa_multiflora	Rmu_co8241265.1_g000001 Rmu_co8483163.1_g000001 Rmu_sc0010238.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278340 Rroxscaffold_4G00278350
rosa_rugosa	Rorug01G0432100 Rorug01G0432200
rosa_samantha	Rh1AG455200 Rh1AG455400 Rh1BG412400 Rh1BG412600 Rh1CG427100 Rh1CG427400 Rh1DG444700 Rh1DG444900
rosa_wichuraiana	Rw1G039710 Rw1G041370 Rw1G041380 Rw1G041470 Rw1G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1947
AccB1I	GGYRCC	5 cut(s)	274, 1216, 1769, 1859, 1947
AccI	GTMKAC	2 cut(s)	22, 839
AccII	CGCG	1 cut(s)	1026
AciI	CCGC	6 cut(s)	408, 1026, 1098, 1637, 1711, 2115
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	2 cut(s)	537, 1716
AcuI	CTGAAG	1 cut(s)	1927
AdeI	CACNNNGTG	1 cut(s)	1584
AfaI	GTAC	7 cut(s)	58, 224, 331, 658, 862, 1494, 1949
AfeI	AGCGCT	1 cut(s)	89
AfiI	CCNNNNNNNGG	4 cut(s)	166, 1044, 1313, 2121
AflIII	ACRYGT	2 cut(s)	379, 1458
AgsI	TTSAA	5 cut(s)	978, 1016, 1301, 1402, 1468
AjnI	CCWGG	2 cut(s)	709, 1393
AjuI	GAANNNNNNNTTGG	6 cut(s)	1196, 1228, 1407, 1439, 1448, 1480
AleI	CACNNNNGTG	2 cut(s)	512, 1573
AloI	GAACNNNNNNTCC	2 cut(s)	1655, 1687
AluBI	AGCT	4 cut(s)	472, 787, 1499, 1525
AluI	AGCT	4 cut(s)	472, 787, 1499, 1525
Alw21I	GWGCWC	6 cut(s)	153, 262, 616, 1064, 1446, 1580
Alw26I	GTCTC	4 cut(s)	187, 745, 1703, 1990
Alw44I	GTGCAC	2 cut(s)	258, 1576
Aor51HI	AGCGCT	1 cut(s)	89
AoxI	GGCC	6 cut(s)	359, 578, 805, 891, 1046, 1338
ApaLI	GTGCAC	2 cut(s)	258, 1576
ApeKI	GCWGC	3 cut(s)	304, 1630, 2139
ApoI	RAATTY	2 cut(s)	537, 1716
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AseI	ATTAAT	1 cut(s)	2058
Asp700I	GAANNNNTTC	1 cut(s)	817
Asp718I	GGTACC	1 cut(s)	1947
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	9 cut(s)	4, 359, 579, 988, 1046, 1650, 1663, 1706, 2146
AsuC2I	CCSGG	4 cut(s)	357, 582, 1781, 2144
AsuHPI	GGTGA	4 cut(s)	337, 496, 1040, 1745
AsuNHI	GCTAGC	1 cut(s)	872
AvaII	GGWCC	6 cut(s)	4, 988, 1650, 1663, 1706, 2146
BaeGI	GKGCMC	2 cut(s)	262, 1580
BanI	GGYRCC	5 cut(s)	274, 1216, 1769, 1859, 1947
BanII	GRGCYC	1 cut(s)	2091
BbsI	GAAGAC	1 cut(s)	1933
Bbv12I	GWGCWC	6 cut(s)	153, 262, 616, 1064, 1446, 1580
BbvI	GCAGC	3 cut(s)	291, 1617, 2126
BccI	CCATC	3 cut(s)	15, 260, 1588
BceAI	ACGGC	2 cut(s)	220, 300
BcgI	CGANNNNNNTGC	6 cut(s)	286, 320, 1051, 1085, 1908, 1942
BciT130I	CCWGG	2 cut(s)	711, 1395
BciVI	GTATCC	1 cut(s)	1421
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	4 cut(s)	357, 582, 1781, 2144
BcoDI	GTCTC	4 cut(s)	187, 745, 1703, 1990
BfaI	CTAG	5 cut(s)	674, 776, 873, 951, 1856
BfmI	CTRYAG	1 cut(s)	1449
BfoI	RGCGCY	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	1421
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	4 cut(s)	305, 1098, 1631, 2140
BlsI	GCNGC	4 cut(s)	306, 1099, 1632, 2141
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	6 cut(s)	357, 582, 711, 1395, 1781, 2144
Bme18I	GGWCC	6 cut(s)	4, 988, 1650, 1663, 1706, 2146
BmgT120I	GGNCC	9 cut(s)	4, 359, 579, 988, 1046, 1650, 1663, 1706, 2146
BmiI	GGNNCC	9 cut(s)	276, 360, 1006, 1218, 1392, 1708, 1771, 1861, 1949
BmrFI	CCNGG	6 cut(s)	357, 582, 711, 1395, 1781, 2144
BmrI	ACTGGG	1 cut(s)	655
BmsI	GCATC	3 cut(s)	1669, 1863, 1990
BmtI	GCTAGC	1 cut(s)	876
BmuI	ACTGGG	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	1933
Bpu10I	CCTNAGC	1 cut(s)	1440
BpuMI	CCSGG	4 cut(s)	357, 582, 1781, 2144
BsaI	GGTCTC	2 cut(s)	187, 1703
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 1044, 1313, 2121
Bse118I	RCCGGY	2 cut(s)	145, 1950
Bse3DI	GCAATG	4 cut(s)	897, 1319, 1563, 1773
BseBI	CCWGG	2 cut(s)	711, 1395
BseGI	GGATG	3 cut(s)	248, 1186, 1239
BseLI	CCNNNNNNNGG	4 cut(s)	166, 1044, 1313, 2121
BseMI	GCAATG	4 cut(s)	897, 1319, 1563, 1773
BseMII	CTCAG	4 cut(s)	31, 245, 524, 1431
BseSI	GKGCMC	2 cut(s)	262, 1580
BseXI	GCAGC	3 cut(s)	291, 1617, 2126
BseYI	CCCAGC	1 cut(s)	787
Bsh1236I	CGCG	1 cut(s)	1026
BshFI	GGCC	6 cut(s)	361, 580, 807, 893, 1048, 1340
BshNI	GGYRCC	5 cut(s)	274, 1216, 1769, 1859, 1947
BsiHKAI	GWGCWC	6 cut(s)	153, 262, 616, 1064, 1446, 1580
BsiSI	CCGG	7 cut(s)	146, 356, 582, 1781, 1951, 2004, 2144
BslFI	GGGAC	1 cut(s)	2032
BslI	CCNNNNNNNGG	4 cut(s)	166, 1044, 1313, 2121
BsmAI	GTCTC	4 cut(s)	187, 745, 1703, 1990
BsmFI	GGGAC	1 cut(s)	2032
BsnI	GGCC	6 cut(s)	361, 580, 807, 893, 1048, 1340
Bso31I	GGTCTC	2 cut(s)	187, 1703
Bsp1286I	GDGCHC	7 cut(s)	153, 262, 616, 1064, 1446, 1580, 2091
Bsp143I	GATC	4 cut(s)	387, 453, 1021, 1248
Bsp19I	CCATGG	1 cut(s)	878
BspACI	CCGC	6 cut(s)	408, 1026, 1098, 1637, 1711, 2115
BspANI	GGCC	6 cut(s)	361, 580, 807, 893, 1048, 1340
BspCNI	CTCAG	4 cut(s)	30, 244, 523, 1432
BspFNI	CGCG	1 cut(s)	1026
BspLI	GGNNCC	9 cut(s)	276, 360, 1006, 1218, 1392, 1708, 1771, 1861, 1949
BspOI	GCTAGC	1 cut(s)	876
BspQI	GCTCTTC	1 cut(s)	620
BspT107I	GGYRCC	5 cut(s)	274, 1216, 1769, 1859, 1947
BspTNI	GGTCTC	2 cut(s)	187, 1703
BsrDI	GCAATG	4 cut(s)	897, 1319, 1563, 1773
BsrFI	RCCGGY	2 cut(s)	145, 1950
BssAI	RCCGGY	2 cut(s)	145, 1950
BssMI	GATC	4 cut(s)	387, 453, 1021, 1248
BssT1I	CCWWGG	8 cut(s)	325, 808, 878, 1307, 1646, 1729, 1762, 2097
Bst2UI	CCWGG	2 cut(s)	711, 1395
Bst4CI	ACNGT	5 cut(s)	118, 244, 421, 1667, 1742
Bst6I	CTCTTC	1 cut(s)	620
BstAPI	GCANNNNNTGC	3 cut(s)	266, 1106, 1325
BstC8I	GCNNGC	5 cut(s)	874, 1326, 1635, 1797, 2137
BstDEI	CTNAG	4 cut(s)	17, 231, 510, 1440
BstDSI	CCRYGG	1 cut(s)	878
BstF5I	GGATG	3 cut(s)	248, 1186, 1239
BstFNI	CGCG	1 cut(s)	1026
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	4 cut(s)	390, 456, 1024, 1251
BstMAI	GTCTC	4 cut(s)	187, 745, 1703, 1990
BstMBI	GATC	4 cut(s)	387, 453, 1021, 1248
BstMWI	GCNNNNNNNGC	9 cut(s)	266, 692, 804, 899, 1106, 1325, 1792, 1852, 2009
BstNI	CCWGG	2 cut(s)	711, 1395
BstNSI	RCATGY	5 cut(s)	383, 1124, 1462, 1846, 2109
BstSCI	CCNGG	6 cut(s)	355, 580, 709, 1393, 1779, 2142
BstSFI	CTRYAG	1 cut(s)	1449
BstSLI	GKGCMC	2 cut(s)	262, 1580
BstUI	CGCG	1 cut(s)	1026
BstV1I	GCAGC	3 cut(s)	291, 1617, 2126
BstV2I	GAAGAC	1 cut(s)	1933
BstX2I	RGATCY	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	1227
BstYI	RGATCY	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	1421
BsuRI	GGCC	6 cut(s)	361, 580, 807, 893, 1048, 1340
BtgI	CCRYGG	1 cut(s)	878
BtsCI	GGATG	3 cut(s)	248, 1186, 1239
BtsIMutI	CAGTG	4 cut(s)	123, 262, 616, 1891
Cac8I	GCNNGC	5 cut(s)	874, 1326, 1635, 1797, 2137
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	145, 1950
Cfr13I	GGNCC	9 cut(s)	4, 359, 579, 988, 1046, 1650, 1663, 1706, 2146
CseI	GACGC	1 cut(s)	1671
CsiI	ACCWGGT	1 cut(s)	1393
Csp6I	GTAC	7 cut(s)	57, 223, 330, 657, 861, 1493, 1948
CspCI	CAANNNNNGTGG	2 cut(s)	1943, 1978
CviQI	GTAC	7 cut(s)	57, 223, 330, 657, 861, 1493, 1948
DdeI	CTNAG	4 cut(s)	17, 231, 510, 1440
DpnI	GATC	4 cut(s)	389, 455, 1023, 1250
DpnII	GATC	4 cut(s)	387, 453, 1021, 1248
DraIII	CACNNNGTG	1 cut(s)	1584
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
Eco130I	CCWWGG	8 cut(s)	325, 808, 878, 1307, 1646, 1729, 1762, 2097
Eco24I	GRGCYC	1 cut(s)	2091
Eco31I	GGTCTC	2 cut(s)	187, 1703
Eco32I	GATATC	1 cut(s)	997
Eco47I	GGWCC	6 cut(s)	4, 988, 1650, 1663, 1706, 2146
Eco47III	AGCGCT	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	1927
EcoO109I	RGGNCCY	3 cut(s)	359, 988, 1046
EcoRII	CCWGG	2 cut(s)	709, 1393
EcoRV	GATATC	1 cut(s)	997
EcoT14I	CCWWGG	8 cut(s)	325, 808, 878, 1307, 1646, 1729, 1762, 2097
EcoT22I	ATGCAT	1 cut(s)	1122
EcoT38I	GRGCYC	1 cut(s)	2091
ErhI	CCWWGG	8 cut(s)	325, 808, 878, 1307, 1646, 1729, 1762, 2097
FaqI	GGGAC	1 cut(s)	2032
FauI	CCCGC	2 cut(s)	401, 1718
FauNDI	CATATG	1 cut(s)	1056
FbaI	TGATCA	1 cut(s)	387
FblI	GTMKAC	2 cut(s)	22, 839
Fnu4HI	GCNGC	4 cut(s)	305, 1098, 1631, 2140
FokI	GGATG	3 cut(s)	235, 1193, 1226
FriOI	GRGCYC	1 cut(s)	2091
Fsp4HI	GCNGC	4 cut(s)	305, 1098, 1631, 2140
FspBI	CTAG	5 cut(s)	674, 776, 873, 951, 1856
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	4 cut(s)	305, 1098, 1631, 2140
GsaI	CCCAGC	1 cut(s)	791
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	6 cut(s)	361, 580, 807, 893, 1048, 1340
HapII	CCGG	7 cut(s)	146, 356, 582, 1781, 1951, 2004, 2144
HgaI	GACGC	1 cut(s)	1671
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	5 cut(s)	114, 240, 781, 1750, 1840
HindII	GTYRAC	5 cut(s)	114, 240, 781, 1750, 1840
HpaI	GTTAAC	2 cut(s)	781, 1840
HpaII	CCGG	7 cut(s)	146, 356, 582, 1781, 1951, 2004, 2144
HphI	GGTGA	4 cut(s)	337, 496, 1040, 1745
Hpy188I	TCNGA	7 cut(s)	161, 284, 545, 1516, 1608, 1706, 2153
Hpy188III	TCNNGA	4 cut(s)	439, 978, 1997, 2063
Hpy99I	CGWCG	1 cut(s)	1706
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	5 cut(s)	118, 244, 421, 1667, 1742
HpyCH4IV	ACGT	1 cut(s)	1746
HpyCH4V	TGCA	9 cut(s)	260, 619, 1054, 1120, 1139, 1190, 1319, 1578, 2044
HpyF10VI	GCNNNNNNNGC	9 cut(s)	266, 692, 804, 899, 1106, 1325, 1792, 1852, 2009
HpyF3I	CTNAG	4 cut(s)	17, 231, 510, 1440
HpySE526I	ACGT	1 cut(s)	1746
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	1951
Ksp22I	TGATCA	1 cut(s)	387
KspAI	GTTAAC	2 cut(s)	781, 1840
Kzo9I	GATC	4 cut(s)	387, 453, 1021, 1248
LguI	GCTCTTC	1 cut(s)	620
Lsp1109I	GCAGC	3 cut(s)	291, 1617, 2126
LweI	GCATC	3 cut(s)	1669, 1863, 1990
MabI	ACCWGGT	1 cut(s)	1393
MaeI	CTAG	5 cut(s)	674, 776, 873, 951, 1856
MaeII	ACGT	1 cut(s)	1746
MaeIII	GTNAC	5 cut(s)	1293, 1478, 1529, 1742, 2017
MalI	GATC	4 cut(s)	389, 455, 1023, 1250
MboI	GATC	4 cut(s)	387, 453, 1021, 1248
MfeI	CAATTG	1 cut(s)	1301
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	7 cut(s)	153, 262, 616, 1064, 1446, 1580, 2091
MluCI	AATT	8 cut(s)	403, 537, 766, 1113, 1204, 1211, 1301, 1716
MlyI	GAGTC	4 cut(s)	223, 646, 1148, 1301
MmeI	TCCRAC	6 cut(s)	262, 734, 886, 1494, 1684, 1886
Mph1103I	ATGCAT	1 cut(s)	1122
MroXI	GAANNNNTTC	1 cut(s)	817
MseI	TTAA	6 cut(s)	366, 450, 780, 1521, 1839, 2058
MslI	CAYNNNNRTG	4 cut(s)	512, 1487, 1573, 1868
MspA1I	CMGCKG	2 cut(s)	787, 1637
MspI	CCGG	7 cut(s)	146, 356, 582, 1781, 1951, 2004, 2144
MspR9I	CCNGG	6 cut(s)	357, 582, 711, 1395, 1781, 2144
MunI	CAATTG	1 cut(s)	1301
MvaI	CCWGG	2 cut(s)	711, 1395
MvnI	CGCG	1 cut(s)	1026
MwoI	GCNNNNNNNGC	9 cut(s)	266, 692, 804, 899, 1106, 1325, 1792, 1852, 2009
NciI	CCSGG	4 cut(s)	357, 582, 1781, 2144
NcoI	CCATGG	1 cut(s)	878
NdeI	CATATG	1 cut(s)	1056
NdeII	GATC	4 cut(s)	387, 453, 1021, 1248
NheI	GCTAGC	1 cut(s)	872
NlaIV	GGNNCC	9 cut(s)	276, 360, 1006, 1218, 1392, 1708, 1771, 1861, 1949
NmeAIII	GCCGAG	1 cut(s)	869
NmuCI	GTSAC	2 cut(s)	1293, 1529
NsiI	ATGCAT	1 cut(s)	1122
NspI	RCATGY	5 cut(s)	383, 1124, 1462, 1846, 2109
OliI	CACNNNNGTG	2 cut(s)	512, 1573
PciI	ACATGT	2 cut(s)	379, 1458
PciSI	GCTCTTC	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	990
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	6 cut(s)	36, 352, 757, 813, 1543, 1828
PflFI	GACNNNGTC	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	306, 1099, 1632, 2141
PleI	GAGTC	4 cut(s)	223, 646, 1148, 1300
PpsI	GAGTC	4 cut(s)	223, 646, 1148, 1300
PpuMI	RGGWCCY	1 cut(s)	988
PscI	ACATGT	2 cut(s)	379, 1458
PshBI	ATTAAT	1 cut(s)	2058
Psp5II	RGGWCCY	1 cut(s)	988
Psp6I	CCWGG	2 cut(s)	709, 1393
PspFI	CCCAGC	1 cut(s)	787
PspGI	CCWGG	2 cut(s)	709, 1393
PspN4I	GGNNCC	9 cut(s)	276, 360, 1006, 1218, 1392, 1708, 1771, 1861, 1949
PspPI	GGNCC	9 cut(s)	4, 359, 579, 988, 1046, 1650, 1663, 1706, 2146
PspPPI	RGGWCCY	1 cut(s)	988
PsuI	RGATCY	1 cut(s)	453
PsyI	GACNNNGTC	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	787
RsaI	GTAC	7 cut(s)	58, 224, 331, 658, 862, 1494, 1949
RsaNI	GTAC	7 cut(s)	57, 223, 330, 657, 861, 1493, 1948
RseI	CAYNNNNRTG	4 cut(s)	512, 1487, 1573, 1868
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	6 cut(s)	366, 450, 780, 1521, 1839, 2058
SatI	GCNGC	4 cut(s)	305, 1098, 1631, 2140
Sau3AI	GATC	4 cut(s)	387, 453, 1021, 1248
Sau96I	GGNCC	9 cut(s)	4, 359, 579, 988, 1046, 1650, 1663, 1706, 2146
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	4 cut(s)	223, 646, 1148, 1301
ScrFI	CCNGG	6 cut(s)	357, 582, 711, 1395, 1781, 2144
SduI	GDGCHC	7 cut(s)	153, 262, 616, 1064, 1446, 1580, 2091
SexAI	ACCWGGT	1 cut(s)	1393
SfaNI	GCATC	3 cut(s)	1669, 1863, 1990
SfcI	CTRYAG	1 cut(s)	1449
SinI	GGWCC	6 cut(s)	4, 988, 1650, 1663, 1706, 2146
SmiMI	CAYNNNNRTG	4 cut(s)	512, 1487, 1573, 1868
Sse9I	AATT	8 cut(s)	403, 537, 766, 1113, 1204, 1211, 1301, 1716
SsiI	CCGC	6 cut(s)	408, 1026, 1098, 1637, 1711, 2115
SspI	AATATT	4 cut(s)	945, 1255, 1405, 2025
SspMI	CTAG	5 cut(s)	674, 776, 873, 951, 1856
StyD4I	CCNGG	6 cut(s)	355, 580, 709, 1393, 1779, 2142
StyI	CCWWGG	8 cut(s)	325, 808, 878, 1307, 1646, 1729, 1762, 2097
TaaI	ACNGT	5 cut(s)	118, 244, 421, 1667, 1742
TaiI	ACGT	1 cut(s)	1749
TaqI	TCGA	3 cut(s)	760, 993, 2064
TaqII	GACCGA	1 cut(s)	1517
TasI	AATT	8 cut(s)	403, 537, 766, 1113, 1204, 1211, 1301, 1716
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	6 cut(s)	36, 352, 757, 813, 1543, 1828
Tru1I	TTAA	6 cut(s)	366, 450, 780, 1521, 1839, 2058
Tru9I	TTAA	6 cut(s)	366, 450, 780, 1521, 1839, 2058
TscAI	CASTG	4 cut(s)	123, 262, 616, 1891
TseFI	GTSAC	2 cut(s)	1293, 1529
TseI	GCWGC	3 cut(s)	304, 1630, 2139
Tsp45I	GTSAC	2 cut(s)	1293, 1529
TspRI	CASTG	4 cut(s)	123, 262, 616, 1891
Tth111I	GACNNNGTC	1 cut(s)	244
VneI	GTGCAC	2 cut(s)	258, 1576
VpaK11BI	GGWCC	6 cut(s)	4, 988, 1650, 1663, 1706, 2146
VspI	ATTAAT	1 cut(s)	2058
XapI	RAATTY	2 cut(s)	537, 1716
XceI	RCATGY	5 cut(s)	383, 1124, 1462, 1846, 2109
XcmI	CCANNNNNNNNNTGG	4 cut(s)	514, 570, 791, 1384
XmiI	GTMKAC	2 cut(s)	22, 839
XmnI	GAANNNNTTC	1 cut(s)	817
XspI	CTAG	5 cut(s)	674, 776, 873, 951, 1856
ZrmI	AGTACT	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.