Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004564

Physical Location & Seq

Genomic Coordinates Forward (+)

68532525 .. 68533165

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG427400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTATGTGACGACACCCATCACTTACTGGTCTAATACCTACAGCGCCAAGACATTCCCAATATTTTCTAGCAATTTGTTCATGGCTAATGGTTCAAGATACGAGGTCCTCTATATCATTGATTCCAGGTTTCAACTTGATCACGGCGAATATGCAAAGAAGGGGCCTCTGCATATGAGCACCTTTTTTGCTTTTACTTGTGGTCTTGGATTTGCCACTCTTTCTGCTACAGTTATGCATGTTCTACTTTTTAATGCAAGTGATATACTGGACTCGTTTCGTGGAAATAAGAAAAATGATGTCCATGCAAGGCTTATGAATTACAAATCAGTGCCAACATTGTGGTTTATCCTCATCCTTGTGATCAATATTGCTCTTATCCAGTTTGCTTGTGTGTATTACAAGGAGTCACTTCAACTGCCTTGGTGGGGTGCATTGCTTGCTTGTTTCATGGCCGTTGCGTTCACGTACCCAATTGGTGTCATCCAAGCCACCACAAACCAGGTAACAAAATTTAAAATTTTCATTTGTTATTCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0015833 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0022857 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

180

Amino Acids

20.53

Weight (kDa)

9.03

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	2 - 175	9.9e-28	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27730 AT5G53510 AT5G53520
fragaria_vesca	FvH4_7g32230
malus_domestica	MD07G1295600.v1.1
prunus_persica	Prupe.2G315100_v2.0.a1
pyrus_communis	pycom07g26830
rosa_chinensis	RchiOBHm_Chr1g0381901 RchiOBHm_Chr1g0381921
rosa_laevigata	RLG00000026200 RLG00000026201
rosa_multiflora	Rmu_co8241265.1_g000001 Rmu_co8483163.1_g000001 Rmu_sc0010238.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278340 Rroxscaffold_4G00278350
rosa_rugosa	Rorug01G0432100 Rorug01G0432200
rosa_samantha	Rh1AG455200 Rh1AG455400 Rh1BG412400 Rh1BG412600 Rh1CG427100 Rh1CG427400 Rh1DG444700 Rh1DG444900
rosa_wichuraiana	Rw1G039710 Rw1G041370 Rw1G041380 Rw1G041470 Rw1G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	2 cut(s)	512, 519
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	96, 134, 416
AjnI	CCWGG	2 cut(s)	125, 501
Alw21I	GWGCWC	1 cut(s)	182
AoxI	GGCC	2 cut(s)	164, 453
ApoI	RAATTY	2 cut(s)	512, 519
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	106, 164
AsuHPI	GGTGA	1 cut(s)	528
AvaII	GGWCC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	160, 440
BciT130I	CCWGG	2 cut(s)	127, 503
BclI	TGATCA	2 cut(s)	139, 363
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	40, 228
BfoI	RGCGCY	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	127, 503
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	106, 164
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	127, 503
BsaAI	YACGTR	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	32, 273, 382
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	127, 503
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	2 cut(s)	354, 483
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	434
BseNI	ACTGG	3 cut(s)	32, 273, 382
BshFI	GGCC	2 cut(s)	166, 455
BsiHKAI	GWGCWC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	428
BsnI	GGCC	2 cut(s)	166, 455
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	139, 363
BspANI	GGCC	2 cut(s)	166, 455
BspLI	GGNNCC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	3 cut(s)	32, 273, 382
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	2 cut(s)	139, 363
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	2 cut(s)	127, 503
Bst4CI	ACNGT	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	354, 483
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	142, 366
BstMBI	GATC	2 cut(s)	139, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	2 cut(s)	127, 503
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	125, 501
BstSFI	CTRYAG	2 cut(s)	40, 228
BstXI	CCANNNNNNTGG	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	166, 455
BtsCI	GGATG	2 cut(s)	354, 483
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	106, 164
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	4 cut(s)	82, 239, 305, 451
CviJI	RGCY	5 cut(s)	86, 166, 313, 455, 491
CviKI_1	RGCY	5 cut(s)	86, 166, 313, 455, 491
CviQI	GTAC	1 cut(s)	469
DpnI	GATC	2 cut(s)	141, 365
DpnII	GATC	2 cut(s)	139, 363
DraI	TTTAAA	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	106
EcoO109I	RGGNCCY	2 cut(s)	106, 164
EcoRII	CCWGG	2 cut(s)	125, 501
EcoT14I	CCWWGG	1 cut(s)	422
EcoT22I	ATGCAT	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	4 cut(s)	85, 242, 308, 454
FatI	CATG	4 cut(s)	81, 238, 304, 450
FauNDI	CATATG	1 cut(s)	174
FbaI	TGATCA	2 cut(s)	139, 363
FokI	GGATG	2 cut(s)	341, 470
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	166, 455
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	4 cut(s)	85, 242, 308, 454
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	122, 272, 407
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	6 cut(s)	155, 172, 238, 257, 308, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	4 cut(s)	85, 242, 308, 454
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	2 cut(s)	139, 363
Kzo9I	GATC	2 cut(s)	139, 363
LpnPI	CCDG	7 cut(s)	13, 112, 139, 254, 395, 488, 515
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	3 cut(s)	7, 408, 505
MalI	GATC	2 cut(s)	141, 365
MboI	GATC	2 cut(s)	139, 363
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	5 cut(s)	73, 319, 474, 512, 519
MlyI	GAGTC	2 cut(s)	266, 416
MnlI	CCTC	4 cut(s)	97, 119, 177, 362
Mph1103I	ATGCAT	1 cut(s)	240
MseI	TTAA	3 cut(s)	252, 516, 541
MslI	CAYNNNNRTG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	127, 503
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	127, 503
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeI	CATATG	1 cut(s)	174
NdeII	GATC	2 cut(s)	139, 363
NlaIII	CATG	4 cut(s)	85, 242, 308, 454
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	7, 408
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	122
PleI	GAGTC	2 cut(s)	266, 415
PpsI	GAGTC	2 cut(s)	266, 415
Ppu21I	YACGTR	1 cut(s)	468
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	125, 501
PspGI	CCWGG	2 cut(s)	125, 501
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	106, 164
PspPPI	RGGWCCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	252, 516, 541
Sau3AI	GATC	2 cut(s)	139, 363
Sau96I	GGNCC	2 cut(s)	106, 164
SchI	GAGTC	2 cut(s)	266, 416
ScrFI	CCNGG	2 cut(s)	127, 503
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	7 cut(s)	41, 108, 131, 185, 470, 507, 541
SexAI	ACCWGGT	1 cut(s)	501
SfcI	CTRYAG	2 cut(s)	40, 228
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	5 cut(s)	73, 319, 474, 512, 519
SspI	AATATT	2 cut(s)	63, 370
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	125, 501
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	470
TasI	AATT	5 cut(s)	73, 319, 474, 512, 519
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	3 cut(s)	252, 516, 541
Tru9I	TTAA	3 cut(s)	252, 516, 541
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	7, 408
Tsp45I	GTSAC	2 cut(s)	7, 408
TspDTI	ATGAA	4 cut(s)	70, 332, 439, 514
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	2 cut(s)	512, 519
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.