Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004564

Physical Location & Seq

Genomic Coordinates Forward (+)

53045648 .. 53047927

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0432100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGCGATGGGATCTTCGCTGTGGATGGGGAAAAGTGGCGGCATCAGAGGAAGGCATCAAGTTCTCAATTCTCAACAAAAGTACTCAGGGACTTCAGCAGTGATATCTTCAAGACCAATGCAGTAAAACTTGCTAGCATAATTCATGAAGCTGCAAGCTGCGACAAATCAATAGAGATGCAAGATTTGTTTATGAAATCAACCTTGGATGCAATCGTCAAGATTCTACTTGGTATCGATCTACAAACCATGTCCGGAACAAACAATGAAGGAATCCGGTTTTCCAATGCTTTTGATGATGCAAACGGAGCTACCCTTTATCGTGTTGCTGATATCTTCTGGAAGATCAAACGGTTCTTGAACATTGGTACAGAAGCAGTGATAAGAAAAAATGTAAAAGTGATGGATCACTTTATATACAGTTTAATCAACAGAAAGATTGAAACACTCCATAAATCAGAAGAAGATGATGAGCAACCTTTAAAGAAAACAGACTTTATCTCCAAGCTTTTGGAAGCTAAAGAGACTGATCCAAAGTACTTGAGAGACATGGTCCTCAGTTTTATTGCTGCCGGCAAAGACACAACTGCTTCTGCTCTTTCATGGTTTCTTTATATGATGTGCAAGCATCTCAGTATACAAGAAAAGATTGCCCAGGAAGTTAGAGAAGCAACAGGTCTGAATAATACTTCAAGCCCTGAGGAATTTGTAGACAACCTTACTGAAGAAGCCCTTAGCAAAATGCAATATCTCCATGCTGCTTTGAATGAGACACTCAGACTCTATCCTACAGTTCCAATGAATGCGAGGGTTTGTTTTTCTGATGATACCTGGCCAGATGGACATAGTGTTAAAAAAGGAGAACTAGTGATACTCCAACCTTATTCAATGGGCCGGATGGAGTTTATATGGGGTGATGATGCAGAAGAGTTTCGGCCAGAGAGATGGCTTGATAAAAATGGCAATTTCCAAGAAGAAAGCCCTTTCAAATTCATAGCCTTCAATGCCGGTCCAAGAATTTGTCTCGGAAAGGAGTATAGTTATATCCAAATGAAGATCTTTTCTGCCGTGCTTTTAAGCAACTACATATTCAAGCTCTCTGACGAGAAAAAGGTTGTGAAATACAAGACGATGGTCACGCTCCATATCAATAGAGGCCTTCATGTTCATGCCTCTCCAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0015833 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0022857 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

395

Amino Acids

45.19

Weight (kDa)

6.58

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 383	2.5e-70	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27730 AT5G53510 AT5G53520
fragaria_vesca	FvH4_7g32230
malus_domestica	MD07G1295600.v1.1
prunus_persica	Prupe.2G315100_v2.0.a1
pyrus_communis	pycom07g26830
rosa_chinensis	RchiOBHm_Chr1g0381901 RchiOBHm_Chr1g0381921
rosa_laevigata	RLG00000026200 RLG00000026201
rosa_multiflora	Rmu_co8241265.1_g000001 Rmu_co8483163.1_g000001 Rmu_sc0010238.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278340 Rroxscaffold_4G00278350
rosa_rugosa	Rorug01G0432100 Rorug01G0432200
rosa_samantha	Rh1AG455200 Rh1AG455400 Rh1BG412400 Rh1BG412600 Rh1CG427100 Rh1CG427400 Rh1DG444700 Rh1DG444900
rosa_wichuraiana	Rw1G039710 Rw1G041370 Rw1G041380 Rw1G041470 Rw1G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	637, 711
AccIII	TCCGGA	1 cut(s)	254
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	3 cut(s)	20, 414, 524
AcoI	YGGCCR	2 cut(s)	833, 935
AcsI	RAATTY	3 cut(s)	704, 989, 1017
AcuI	CTGAAG	2 cut(s)	79, 744
AfaI	GTAC	3 cut(s)	84, 370, 539
AgsI	TTSAA	9 cut(s)	112, 361, 443, 693, 766, 888, 988, 1003, 1093
AhlI	ACTAGT	1 cut(s)	865
AjnI	CCWGG	2 cut(s)	654, 830
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	6 cut(s)	152, 159, 311, 508, 518, 1096
AluI	AGCT	6 cut(s)	152, 159, 311, 508, 518, 1096
Alw26I	GTCTC	4 cut(s)	518, 540, 764, 1028
AlwI	GGATC	3 cut(s)	20, 414, 524
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	4 cut(s)	833, 892, 935, 1156
ApeKI	GCWGC	4 cut(s)	152, 159, 569, 758
ApoI	RAATTY	3 cut(s)	704, 989, 1017
Asp700I	GAANNNNTTC	1 cut(s)	930
AspS9I	GGNCC	3 cut(s)	553, 892, 1010
AsuHPI	GGTGA	1 cut(s)	926
AsuNHI	GCTAGC	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	553, 1010
AxyI	CCTNAGG	1 cut(s)	699
BalI	TGGCCA	1 cut(s)	835
BbvI	GCAGC	4 cut(s)	139, 146, 556, 745
BccI	CCATC	7 cut(s)	2, 20, 397, 833, 892, 939, 1126
BceAI	ACGGC	1 cut(s)	1052
BciT130I	CCWGG	2 cut(s)	656, 832
BcoDI	GTCTC	4 cut(s)	518, 540, 764, 1028
BcuI	ACTAGT	1 cut(s)	865
BfaI	CTAG	2 cut(s)	135, 866
BfmI	CTRYAG	1 cut(s)	789
BglII	AGATCT	1 cut(s)	1056
BisI	GCNGC	5 cut(s)	41, 153, 160, 570, 759
BlsI	GCNGC	5 cut(s)	42, 154, 161, 571, 760
BmcAI	AGTACT	2 cut(s)	84, 539
Bme1390I	CCNGG	2 cut(s)	656, 832
Bme18I	GGWCC	2 cut(s)	553, 1010
BmgT120I	GGNCC	3 cut(s)	553, 892, 1010
BmrFI	CCNGG	2 cut(s)	656, 832
BmsI	GCATC	7 cut(s)	52, 65, 168, 199, 289, 637, 910
BmtI	GCTAGC	1 cut(s)	138
BoxI	GACNNNNGTC	1 cut(s)	1133
Bpu10I	CCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	562
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	204, 654
BsaWI	WCCGGW	2 cut(s)	254, 276
BsaXI	ACNNNNNCTCC	4 cut(s)	485, 515, 852, 882
Bse118I	RCCGGY	2 cut(s)	572, 1007
Bse21I	CCTNAGG	1 cut(s)	699
BseAI	TCCGGA	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	656, 832
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	204, 654
BseGI	GGATG	3 cut(s)	31, 214, 903
BseMII	CTCAG	5 cut(s)	100, 571, 646, 690, 790
BseXI	GCAGC	4 cut(s)	139, 146, 556, 745
BshFI	GGCC	4 cut(s)	835, 894, 937, 1158
BshVI	ATCGAT	1 cut(s)	237
BsiSI	CCGG	5 cut(s)	255, 277, 573, 895, 1008
BslFI	GGGAC	1 cut(s)	104
BsmAI	GTCTC	4 cut(s)	518, 540, 764, 1028
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	4 cut(s)	835, 894, 937, 1158
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	6 cut(s)	12, 238, 345, 406, 529, 1056
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	4 cut(s)	835, 894, 937, 1158
BspCNI	CTCAG	5 cut(s)	99, 570, 645, 691, 789
BspDI	ATCGAT	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	3 cut(s)	20, 414, 524
BsrFI	RCCGGY	2 cut(s)	572, 1007
BssAI	RCCGGY	2 cut(s)	572, 1007
BssECI	CCNNGG	2 cut(s)	204, 654
BssMI	GATC	6 cut(s)	12, 238, 345, 406, 529, 1056
BssNAI	GTATAC	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	638
Bst2UI	CCWGG	2 cut(s)	656, 832
Bst4CI	ACNGT	3 cut(s)	354, 422, 793
Bst6I	CTCTTC	1 cut(s)	921
BstC8I	GCNNGC	4 cut(s)	136, 157, 574, 626
BstDEI	CTNAG	6 cut(s)	86, 557, 632, 699, 734, 776
BstF5I	GGATG	3 cut(s)	31, 214, 903
BstKTI	GATC	6 cut(s)	15, 241, 348, 409, 532, 1059
BstMAI	GTCTC	4 cut(s)	518, 540, 764, 1028
BstMBI	GATC	6 cut(s)	12, 238, 345, 406, 529, 1056
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 1004
BstNI	CCWGG	2 cut(s)	656, 832
BstPAI	GACNNNNGTC	1 cut(s)	1133
BstSCI	CCNGG	2 cut(s)	654, 830
BstSFI	CTRYAG	1 cut(s)	789
BstV1I	GCAGC	4 cut(s)	139, 146, 556, 745
BstX2I	RGATCY	2 cut(s)	12, 1056
BstXI	CCANNNNNNTGG	2 cut(s)	511, 945
BstYI	RGATCY	2 cut(s)	12, 1056
BstZ17I	GTATAC	1 cut(s)	638
Bsu15I	ATCGAT	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	699
BsuRI	GGCC	4 cut(s)	835, 894, 937, 1158
BsuTUI	ATCGAT	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	31, 214, 903
BtsI	GCAGTG	2 cut(s)	106, 384
BtsIMutI	CAGTG	2 cut(s)	106, 384
Cac8I	GCNNGC	4 cut(s)	136, 157, 574, 626
CciI	TCATGA	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	572, 1007
Cfr13I	GGNCC	3 cut(s)	553, 892, 1010
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	83, 369, 538
CviAII	CATG	7 cut(s)	146, 250, 550, 603, 755, 1163, 1169
CviQI	GTAC	3 cut(s)	83, 369, 538
DdeI	CTNAG	6 cut(s)	86, 557, 632, 699, 734, 776
DpnI	GATC	6 cut(s)	14, 240, 347, 408, 531, 1058
DpnII	GATC	6 cut(s)	12, 238, 345, 406, 529, 1056
DraI	TTTAAA	1 cut(s)	483
EaeI	YGGCCR	2 cut(s)	833, 935
Eam1104I	CTCTTC	1 cut(s)	921
EarI	CTCTTC	1 cut(s)	921
Eco130I	CCWWGG	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	1158
Eco32I	GATATC	2 cut(s)	106, 334
Eco47I	GGWCC	2 cut(s)	553, 1010
Eco57I	CTGAAG	2 cut(s)	79, 744
Eco81I	CCTNAGG	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	654, 830
EcoRV	GATATC	2 cut(s)	106, 334
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	7 cut(s)	149, 253, 553, 606, 758, 1166, 1172
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	7 cut(s)	145, 249, 549, 602, 754, 1162, 1168
FblI	GTMKAC	2 cut(s)	637, 711
Fnu4HI	GCNGC	5 cut(s)	41, 153, 160, 570, 759
FokI	GGATG	3 cut(s)	38, 221, 910
Fsp4HI	GCNGC	5 cut(s)	41, 153, 160, 570, 759
FspBI	CTAG	2 cut(s)	135, 866
GluI	GCNGC	5 cut(s)	41, 153, 160, 570, 759
HaeIII	GGCC	4 cut(s)	835, 894, 937, 1158
HapII	CCGG	5 cut(s)	255, 277, 573, 895, 1008
Hin1II	CATG	7 cut(s)	149, 253, 553, 606, 758, 1166, 1172
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	223, 273, 780
HpaII	CCGG	5 cut(s)	255, 277, 573, 895, 1008
HphI	GGTGA	1 cut(s)	926
Hpy166II	GTNNAC	2 cut(s)	638, 712
Hpy188I	TCNGA	7 cut(s)	48, 460, 681, 779, 823, 1028, 1102
Hpy188III	TCNNGA	6 cut(s)	112, 146, 220, 255, 340, 358
Hpy8I	GTNNAC	2 cut(s)	638, 712
HpyAV	CCTTC	4 cut(s)	46, 263, 1009, 1169
HpyCH4III	ACNGT	3 cut(s)	354, 422, 793
HpyCH4V	TGCA	8 cut(s)	122, 155, 181, 212, 302, 624, 745, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 1004
HpyF3I	CTNAG	6 cut(s)	86, 557, 632, 699, 734, 776
Hsp92II	CATG	7 cut(s)	149, 253, 553, 606, 758, 1166, 1172
Kpn2I	TCCGGA	1 cut(s)	254
KroI	GCCGGC	1 cut(s)	572
KroNI	GCCGGC	1 cut(s)	574
Kzo9I	GATC	6 cut(s)	12, 238, 345, 406, 529, 1056
LmnI	GCTCC	2 cut(s)	308, 1146
Lsp1109I	GCAGC	4 cut(s)	139, 146, 556, 745
LweI	GCATC	7 cut(s)	52, 65, 168, 199, 289, 637, 910
MaeI	CTAG	2 cut(s)	135, 866
MaeIII	GTNAC	1 cut(s)	1135
MalI	GATC	6 cut(s)	14, 240, 347, 408, 531, 1058
MboI	GATC	6 cut(s)	12, 238, 345, 406, 529, 1056
MflI	RGATCY	2 cut(s)	12, 1056
MlsI	TGGCCA	1 cut(s)	835
MluCI	AATT	6 cut(s)	68, 141, 704, 964, 989, 1017
MluNI	TGGCCA	1 cut(s)	835
MlyI	GAGTC	1 cut(s)	774
MmeI	TCCRAC	1 cut(s)	901
MnlI	CCTC	6 cut(s)	42, 566, 694, 801, 1148, 1183
Mox20I	TGGCCA	1 cut(s)	835
MroI	TCCGGA	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	930
MscI	TGGCCA	1 cut(s)	835
MseI	TTAA	4 cut(s)	425, 482, 852, 1076
MslI	CAYNNNNRTG	1 cut(s)	1167
Msp20I	TGGCCA	1 cut(s)	835
MspI	CCGG	5 cut(s)	255, 277, 573, 895, 1008
MspR9I	CCNGG	2 cut(s)	656, 832
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	2 cut(s)	656, 832
MwoI	GCNNNNNNNGC	2 cut(s)	308, 1004
NaeI	GCCGGC	1 cut(s)	574
NdeII	GATC	6 cut(s)	12, 238, 345, 406, 529, 1056
NgoMIV	GCCGGC	1 cut(s)	572
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	7 cut(s)	149, 253, 553, 606, 758, 1166, 1172
NmuCI	GTSAC	1 cut(s)	1135
PagI	TCATGA	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	1158
PctI	GAATGC	1 cut(s)	808
PdiI	GCCGGC	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	930
PfeI	GAWTC	2 cut(s)	223, 273
PflFI	GACNNNGTC	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	42, 154, 161, 571, 760
PleI	GAGTC	1 cut(s)	774
PpsI	GAGTC	1 cut(s)	774
PshAI	GACNNNNGTC	1 cut(s)	1133
Psp6I	CCWGG	2 cut(s)	654, 830
PspGI	CCWGG	2 cut(s)	654, 830
PspPI	GGNCC	3 cut(s)	553, 892, 1010
PsrI	GAACNNNNNNTAC	2 cut(s)	855, 887
PsuI	RGATCY	2 cut(s)	12, 1056
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	3 cut(s)	84, 370, 539
RsaNI	GTAC	3 cut(s)	83, 369, 538
RseI	CAYNNNNRTG	1 cut(s)	1167
SaqAI	TTAA	4 cut(s)	425, 482, 852, 1076
SatI	GCNGC	5 cut(s)	41, 153, 160, 570, 759
Sau3AI	GATC	6 cut(s)	12, 238, 345, 406, 529, 1056
Sau96I	GGNCC	3 cut(s)	553, 892, 1010
ScaI	AGTACT	2 cut(s)	84, 539
SchI	GAGTC	1 cut(s)	774
ScrFI	CCNGG	2 cut(s)	656, 832
SfaNI	GCATC	7 cut(s)	52, 65, 168, 199, 289, 637, 910
SfcI	CTRYAG	1 cut(s)	789
SinI	GGWCC	2 cut(s)	553, 1010
SmiMI	CAYNNNNRTG	1 cut(s)	1167
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
SpeI	ACTAGT	1 cut(s)	865
Sse9I	AATT	6 cut(s)	68, 141, 704, 964, 989, 1017
SseBI	AGGCCT	1 cut(s)	1158
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	2 cut(s)	135, 866
StuI	AGGCCT	1 cut(s)	1158
StyD4I	CCNGG	2 cut(s)	654, 830
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	354, 422, 793
TaqI	TCGA	1 cut(s)	237
TasI	AATT	6 cut(s)	68, 141, 704, 964, 989, 1017
TatI	WGTACW	2 cut(s)	82, 537
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	223, 273
Tru1I	TTAA	4 cut(s)	425, 482, 852, 1076
Tru9I	TTAA	4 cut(s)	425, 482, 852, 1076
TscAI	CASTG	2 cut(s)	106, 384
TseFI	GTSAC	1 cut(s)	1135
TseI	GCWGC	4 cut(s)	152, 159, 569, 758
Tsp45I	GTSAC	1 cut(s)	1135
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	106, 384
Tth111I	GACNNNGTC	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	553, 1010
XapI	RAATTY	3 cut(s)	704, 989, 1017
XmiI	GTMKAC	2 cut(s)	637, 711
XmnI	GAANNNNTTC	1 cut(s)	930
XspI	CTAG	2 cut(s)	135, 866
ZrmI	AGTACT	2 cut(s)	84, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.