Rh1BG412600

OPT oligopeptide transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004564
Physical Location & Seq
Forward (+)
53370252 .. 53371655
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG412600.1

Sequence Viewer

Length: 1221 bp
ATGGCTAATGGTTCAAGATACGAGGTCCTCTATATCATTGATTCCAGGTTTCAACTTGATCACGGCGAATATGCAAAGAAGGGGCCTCTGCATATGAGCACCTTTTTTGCTTTTACTTGTGGTCTTGGATTTGCCACTCTTTCTGCTACAGTTATGCATGTTCTACTTTTTAATGCAAGTGATATACTGGACTCGTTTCGTGGAAATAAGAAAAATGATGTCCATGCAAGGCTTATGAATTACAAATCAGTGCCAACATTGTGGTTTATCCTCATCCTTGTGATCAATATTGCTCTTATCCAGTTTGCTTGTGTGTATTACAAGGAGTCACTTCAACTGCCTTGGTGGGGTGCATTGCTTGCTTGTTTCATGGCCGTTGCGTTCACGAACCCAATTGGTGTCATCCAAGCCACCACAAACCAGCAACCAGGTTTGAATATTATCACAGAATATGTGATAGGATACCTTTATCCTGAGCGCCCTGTAGCTAACATGTGCTTCAAAGTGTATGGTTACATAAGTATGATGCAAGGTCTAAATTTTGTGTCGGATTTTAAGCTCGGTCACTACATGAAGATTCCACCAAGAGCAATGTTCACAGCACAGATGATAGGAACTGTTGTAGCAGTGGTTGTATACCAGTGTACAGCATGGTGGCTGATGGCAGACATTCCCAACCTCTGTGATACCTCCCTGCTGCCACCAGACAGCCCTTGGACTTGTCCACAGGACCGCGTGTTCTTTGATGCGTCTGTTATCTGGGGTCTCGTTGGACCCCGCAGAATTTTTGGAAACCTTGGTGAATACAGTAACATCAACTGGTTTTTCCTTGGTGGCGCCATTGCCCCGGTGCTTGTTTGGCTTGCGCACAGGATTTTTCCCAAACAAAAATGGATTCTTGCTGTTAACATGCCTGTCTTGCTAGGTGCCACGGCAATGATGCCCCCTGCCACTGCTTTGAACTTTACAAGTTGGATATTTGTGGCATTTCTTTCAGGTTTTGTTGTCTTCAGGTACCGGCAAGATTTGTGGAAGAAGTATAACTATGTCGCCTCTGGTGCTCTCGAGGCCGGAACTGCCTTTGTTACGATATTGGTGTTCATTACCTTGCAGTCCCAGAATATTGAACTCGACTGGTGGGGGAACAAAGGAGAGCTCTGCCCCCTGGCTACATGCCCTACTGCGAAAGGGGTTGTCATTGCTGGCTGCCCGGTCCTCTAG

Protein Analysis

406

Amino Acids

45.53

Weight (kDa)

8.6

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 7 - 368 5.5e-88 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 867
Acc65I GGTACC 1 cut(s) 1014
AccB1I GGYRCC 3 cut(s) 836, 926, 1014
AccI GTMKAC 1 cut(s) 636
AccII CGCG 1 cut(s) 735
AciI CCGC 2 cut(s) 733, 778
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 2 cut(s) 538, 783
AcuI CTGAAG 1 cut(s) 994
AcyI GRCGYC 1 cut(s) 837
AfaI GTAC 2 cut(s) 646, 1016
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 7 cut(s) 15, 53, 335, 436, 502, 961, 1127
AjnI CCWGG 3 cut(s) 44, 427, 1164
AloI GAACNNNNNNTCC 2 cut(s) 722, 754
AluBI AGCT 3 cut(s) 488, 559, 1156
AluI AGCT 3 cut(s) 488, 559, 1156
Alw21I GWGCWC 3 cut(s) 101, 1063, 1158
Alw26I GTCTC 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 1064
AoxI GGCC 3 cut(s) 83, 372, 1068
ApeKI GCWGC 2 cut(s) 697, 1206
ApoI RAATTY 2 cut(s) 538, 783
Asp718I GGTACC 1 cut(s) 1014
AspLEI GCGC 3 cut(s) 480, 839, 868
AspS9I GGNCC 5 cut(s) 25, 83, 730, 773, 1213
AsuC2I CCSGG 2 cut(s) 848, 1211
AsuHPI GGTGA 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 1064
AvaII GGWCC 4 cut(s) 25, 730, 773, 1213
BanI GGYRCC 3 cut(s) 836, 926, 1014
BanII GRGCYC 1 cut(s) 1158
BbsI GAAGAC 1 cut(s) 1000
Bbv12I GWGCWC 3 cut(s) 101, 1063, 1158
BbvI GCAGC 2 cut(s) 684, 1193
BccI CCATC 1 cut(s) 655
BceAI ACGGC 3 cut(s) 79, 359, 948
BciT130I CCWGG 3 cut(s) 46, 429, 1166
BciVI GTATCC 1 cut(s) 455
BclI TGATCA 2 cut(s) 58, 282
BcnI CCSGG 2 cut(s) 848, 1211
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 2 cut(s) 923, 1219
BfmI CTRYAG 2 cut(s) 147, 483
BfoI RGCGCY 2 cut(s) 481, 840
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 2 cut(s) 698, 1207
BlsI GCNGC 2 cut(s) 699, 1208
Bme1390I CCNGG 5 cut(s) 46, 429, 848, 1166, 1211
Bme18I GGWCC 4 cut(s) 25, 730, 773, 1213
BmeT110I CYCGRG 1 cut(s) 1064
BmgT120I GGNCC 5 cut(s) 25, 83, 730, 773, 1213
BmiI GGNNCC 5 cut(s) 84, 775, 838, 928, 1016
BmrFI CCNGG 5 cut(s) 46, 429, 848, 1166, 1211
BmsI GCATC 3 cut(s) 516, 736, 930
BpiI GAAGAC 1 cut(s) 1000
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 2 cut(s) 848, 1211
BsaHI GRCGYC 1 cut(s) 837
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 7 cut(s) 341, 713, 796, 829, 846, 930, 1164
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 1017
Bse1I ACTGG 5 cut(s) 192, 301, 640, 824, 1139
Bse3DI GCAATG 5 cut(s) 353, 597, 840, 942, 1197
BseBI CCWGG 3 cut(s) 46, 429, 1166
BseDI CCNNGG 7 cut(s) 341, 713, 796, 829, 846, 930, 1164
BseGI GGATG 2 cut(s) 273, 402
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 5 cut(s) 353, 597, 840, 942, 1197
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 5 cut(s) 192, 301, 640, 824, 1139
BseXI GCAGC 2 cut(s) 684, 1193
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 3 cut(s) 85, 374, 1070
BshNI GGYRCC 3 cut(s) 836, 926, 1014
BsiHKAI GWGCWC 3 cut(s) 101, 1063, 1158
BsiHKCI CYCGRG 1 cut(s) 1064
BsiSI CCGG 4 cut(s) 848, 1018, 1071, 1211
BslFI GGGAC 1 cut(s) 1099
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 1099
BsnI GGCC 3 cut(s) 85, 374, 1070
Bso31I GGTCTC 1 cut(s) 770
BsoBI CYCGRG 1 cut(s) 1064
Bsp1286I GDGCHC 3 cut(s) 101, 1063, 1158
Bsp1407I TGTACA 1 cut(s) 644
Bsp143I GATC 2 cut(s) 58, 282
BspACI CCGC 2 cut(s) 733, 778
BspANI GGCC 3 cut(s) 85, 374, 1070
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 1 cut(s) 735
BspLI GGNNCC 5 cut(s) 84, 775, 838, 928, 1016
BspT107I GGYRCC 3 cut(s) 836, 926, 1014
BspTNI GGTCTC 1 cut(s) 770
BsrDI GCAATG 5 cut(s) 353, 597, 840, 942, 1197
BsrFI RCCGGY 1 cut(s) 1017
BsrGI TGTACA 1 cut(s) 644
BsrI ACTGG 5 cut(s) 192, 301, 640, 824, 1139
BssAI RCCGGY 1 cut(s) 1017
BssECI CCNNGG 7 cut(s) 341, 713, 796, 829, 846, 930, 1164
BssMI GATC 2 cut(s) 58, 282
BssNAI GTATAC 1 cut(s) 637
BssNI GRCGYC 1 cut(s) 837
BssT1I CCWWGG 4 cut(s) 341, 713, 796, 829
Bst1107I GTATAC 1 cut(s) 637
Bst2UI CCWGG 3 cut(s) 46, 429, 1166
Bst4CI ACNGT 3 cut(s) 151, 619, 809
BstACI GRCGYC 1 cut(s) 837
BstAPI GCANNNNNTGC 1 cut(s) 359
BstAUI TGTACA 1 cut(s) 644
BstC8I GCNNGC 3 cut(s) 360, 864, 1204
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 930
BstF5I GGATG 2 cut(s) 273, 402
BstFNI CGCG 1 cut(s) 735
BstH2I RGCGCY 2 cut(s) 481, 840
BstHHI GCGC 3 cut(s) 480, 839, 868
BstKTI GATC 2 cut(s) 61, 285
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 2 cut(s) 58, 282
BstMWI GCNNNNNNNGC 6 cut(s) 359, 859, 919, 1058, 1067, 1076
BstNI CCWGG 3 cut(s) 46, 429, 1166
BstNSI RCATGY 4 cut(s) 161, 496, 913, 1176
BstSCI CCNGG 5 cut(s) 44, 427, 846, 1164, 1209
BstSFI CTRYAG 2 cut(s) 147, 483
BstUI CGCG 1 cut(s) 735
BstV1I GCAGC 2 cut(s) 684, 1193
BstV2I GAAGAC 1 cut(s) 1000
BstXI CCANNNNNNTGG 1 cut(s) 261
BstZ17I GTATAC 1 cut(s) 637
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 3 cut(s) 85, 374, 1070
BtgI CCRYGG 1 cut(s) 930
BtsCI GGATG 2 cut(s) 273, 402
BtsI GCAGTG 2 cut(s) 633, 951
BtsIMutI CAGTG 4 cut(s) 255, 633, 647, 951
Cac8I GCNNGC 3 cut(s) 360, 864, 1204
CfoI GCGC 3 cut(s) 480, 839, 868
Cfr10I RCCGGY 1 cut(s) 1017
Cfr13I GGNCC 5 cut(s) 25, 83, 730, 773, 1213
CseI GACGC 1 cut(s) 738
CsiI ACCWGGT 1 cut(s) 427
Csp6I GTAC 2 cut(s) 645, 1015
CspCI CAANNNNNGTGG 2 cut(s) 1010, 1045
CviAII CATG 8 cut(s) 158, 224, 370, 493, 571, 651, 910, 1173
CviQI GTAC 2 cut(s) 645, 1015
DdeI CTNAG 1 cut(s) 474
DinI GGCGCC 1 cut(s) 838
DpnI GATC 2 cut(s) 60, 284
DpnII GATC 2 cut(s) 58, 282
EaeI YGGCCR 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 1156
Eco130I CCWWGG 4 cut(s) 341, 713, 796, 829
Eco24I GRGCYC 1 cut(s) 1158
Eco31I GGTCTC 1 cut(s) 770
Eco47I GGWCC 4 cut(s) 25, 730, 773, 1213
Eco53kI GAGCTC 1 cut(s) 1156
Eco57I CTGAAG 1 cut(s) 994
Eco88I CYCGRG 1 cut(s) 1064
EcoICRI GAGCTC 1 cut(s) 1156
EcoO109I RGGNCCY 2 cut(s) 25, 83
EcoRII CCWGG 3 cut(s) 44, 427, 1164
EcoT14I CCWWGG 4 cut(s) 341, 713, 796, 829
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 1158
EgeI GGCGCC 1 cut(s) 838
EheI GGCGCC 1 cut(s) 838
ErhI CCWWGG 4 cut(s) 341, 713, 796, 829
FaeI CATG 8 cut(s) 161, 227, 373, 496, 574, 654, 913, 1176
FaqI GGGAC 1 cut(s) 1099
FatI CATG 8 cut(s) 157, 223, 369, 492, 570, 650, 909, 1172
FauI CCCGC 1 cut(s) 785
FauNDI CATATG 1 cut(s) 93
FbaI TGATCA 2 cut(s) 58, 282
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 2 cut(s) 698, 1207
FokI GGATG 2 cut(s) 260, 389
FriOI GRGCYC 1 cut(s) 1158
Fsp4HI GCNGC 2 cut(s) 698, 1207
FspBI CTAG 2 cut(s) 923, 1219
FspI TGCGCA 1 cut(s) 867
GlaI GCGC 3 cut(s) 479, 838, 867
GluI GCNGC 2 cut(s) 698, 1207
HaeII RGCGCY 2 cut(s) 481, 840
HaeIII GGCC 3 cut(s) 85, 374, 1070
HapII CCGG 4 cut(s) 848, 1018, 1071, 1211
HgaI GACGC 1 cut(s) 738
HhaI GCGC 3 cut(s) 480, 839, 868
Hin1I GRCGYC 1 cut(s) 837
Hin1II CATG 8 cut(s) 161, 227, 373, 496, 574, 654, 913, 1176
Hin6I GCGC 3 cut(s) 478, 837, 866
HinP1I GCGC 3 cut(s) 478, 837, 866
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 5 cut(s) 41, 191, 326, 577, 895
HpaI GTTAAC 1 cut(s) 907
HpaII CCGG 4 cut(s) 848, 1018, 1071, 1211
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 6 cut(s) 384, 597, 637, 645, 725, 907
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 4 cut(s) 15, 385, 473, 1064
Hpy8I GTNNAC 6 cut(s) 384, 597, 637, 645, 725, 907
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 151, 619, 809
HpyCH4V TGCA 8 cut(s) 74, 91, 157, 176, 227, 353, 529, 1111
HpyF10VI GCNNNNNNNGC 6 cut(s) 359, 859, 919, 1058, 1067, 1076
HpyF3I CTNAG 1 cut(s) 474
Hsp92I GRCGYC 1 cut(s) 837
Hsp92II CATG 8 cut(s) 161, 227, 373, 496, 574, 654, 913, 1176
HspAI GCGC 3 cut(s) 478, 837, 866
KasI GGCGCC 1 cut(s) 836
KpnI GGTACC 1 cut(s) 1018
Ksp22I TGATCA 2 cut(s) 58, 282
KspAI GTTAAC 1 cut(s) 907
Kzo9I GATC 2 cut(s) 58, 282
Lsp1109I GCAGC 2 cut(s) 684, 1193
LweI GCATC 3 cut(s) 516, 736, 930
MabI ACCWGGT 1 cut(s) 427
MaeI CTAG 2 cut(s) 923, 1219
MaeIII GTNAC 5 cut(s) 327, 512, 563, 809, 1084
MalI GATC 2 cut(s) 60, 284
MboI GATC 2 cut(s) 58, 282
MboII GAAGA 3 cut(s) 586, 1000, 1045
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 3 cut(s) 101, 1063, 1158
MluCI AATT 4 cut(s) 238, 393, 538, 783
Mly113I GGCGCC 1 cut(s) 837
MlyI GAGTC 2 cut(s) 185, 335
MmeI TCCRAC 3 cut(s) 528, 751, 953
MnlI CCTC 8 cut(s) 16, 38, 96, 281, 689, 700, 1060, 1063
Mph1103I ATGCAT 1 cut(s) 159
MseI TTAA 3 cut(s) 171, 555, 906
MslI CAYNNNNRTG 3 cut(s) 278, 521, 935
MspI CCGG 4 cut(s) 848, 1018, 1071, 1211
MspR9I CCNGG 5 cut(s) 46, 429, 848, 1166, 1211
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 3 cut(s) 46, 429, 1166
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 6 cut(s) 359, 859, 919, 1058, 1067, 1076
NarI GGCGCC 1 cut(s) 837
NciI CCSGG 2 cut(s) 848, 1211
NdeI CATATG 1 cut(s) 93
NdeII GATC 2 cut(s) 58, 282
NlaIII CATG 8 cut(s) 161, 227, 373, 496, 574, 654, 913, 1176
NlaIV GGNNCC 5 cut(s) 84, 775, 838, 928, 1016
NmuCI GTSAC 2 cut(s) 327, 563
NsbI TGCGCA 1 cut(s) 867
NsiI ATGCAT 1 cut(s) 159
NspI RCATGY 4 cut(s) 161, 496, 913, 1176
PaeR7I CTCGAG 1 cut(s) 1064
PciI ACATGT 1 cut(s) 492
PfeI GAWTC 3 cut(s) 41, 577, 895
PkrI GCNGC 2 cut(s) 699, 1208
PleI GAGTC 2 cut(s) 185, 334
PluTI GGCGCC 1 cut(s) 840
PpsI GAGTC 2 cut(s) 185, 334
PpuMI RGGWCCY 1 cut(s) 25
PscI ACATGT 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 1158
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 3 cut(s) 44, 427, 1164
PspGI CCWGG 3 cut(s) 44, 427, 1164
PspN4I GGNNCC 5 cut(s) 84, 775, 838, 928, 1016
PspPI GGNCC 5 cut(s) 25, 83, 730, 773, 1213
PspPPI RGGWCCY 1 cut(s) 25
RsaI GTAC 2 cut(s) 646, 1016
RsaNI GTAC 2 cut(s) 645, 1015
RseI CAYNNNNRTG 3 cut(s) 278, 521, 935
SacI GAGCTC 1 cut(s) 1158
SaqAI TTAA 3 cut(s) 171, 555, 906
SatI GCNGC 2 cut(s) 698, 1207
Sau3AI GATC 2 cut(s) 58, 282
Sau96I GGNCC 5 cut(s) 25, 83, 730, 773, 1213
SchI GAGTC 2 cut(s) 185, 335
ScrFI CCNGG 5 cut(s) 46, 429, 848, 1166, 1211
SduI GDGCHC 3 cut(s) 101, 1063, 1158
SexAI ACCWGGT 1 cut(s) 427
SfaNI GCATC 3 cut(s) 516, 736, 930
SfcI CTRYAG 2 cut(s) 147, 483
SfoI GGCGCC 1 cut(s) 838
Sfr274I CTCGAG 1 cut(s) 1064
SinI GGWCC 4 cut(s) 25, 730, 773, 1213
SlaI CTCGAG 1 cut(s) 1064
SmiMI CAYNNNNRTG 3 cut(s) 278, 521, 935
SmlI CTYRAG 1 cut(s) 1064
SmoI CTYRAG 1 cut(s) 1064
Sse9I AATT 4 cut(s) 238, 393, 538, 783
SsiI CCGC 2 cut(s) 733, 778
SspDI GGCGCC 1 cut(s) 836
SspI AATATT 3 cut(s) 289, 439, 1123
SspMI CTAG 2 cut(s) 923, 1219
SstI GAGCTC 1 cut(s) 1158
StyD4I CCNGG 5 cut(s) 44, 427, 846, 1164, 1209
StyI CCWWGG 4 cut(s) 341, 713, 796, 829
TaaI ACNGT 3 cut(s) 151, 619, 809
TaqI TCGA 2 cut(s) 1065, 1131
TaqII GACCGA 1 cut(s) 551
TasI AATT 4 cut(s) 238, 393, 538, 783
TatI WGTACW 1 cut(s) 644
TfiI GAWTC 3 cut(s) 41, 577, 895
Tru1I TTAA 3 cut(s) 171, 555, 906
Tru9I TTAA 3 cut(s) 171, 555, 906
TscAI CASTG 4 cut(s) 255, 633, 647, 958
TseFI GTSAC 2 cut(s) 327, 563
TseI GCWGC 2 cut(s) 697, 1206
Tsp45I GTSAC 2 cut(s) 327, 563
TspDTI ATGAA 4 cut(s) 251, 358, 587, 1090
TspRI CASTG 4 cut(s) 255, 633, 647, 958
VpaK11BI GGWCC 4 cut(s) 25, 730, 773, 1213
XapI RAATTY 2 cut(s) 538, 783
XceI RCATGY 4 cut(s) 161, 496, 913, 1176
XcmI CCANNNNNNNNNTGG 1 cut(s) 711
XhoI CTCGAG 1 cut(s) 1064
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 2 cut(s) 923, 1219
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.