Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004564

Physical Location & Seq

Genomic Coordinates Reverse (-)

1398168 .. 1407536

Gene Structure 9369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGGAGATAGATAATAGTACTGCTGTAAAGATTGAGCAGGAAGATGAGCGCTCTGTCATTGAGCAAGTGGAGTTGACAGTGCCAAAAACCGATGACCCTACCTTGCCGGTGCTCACATTCCGAATGTGGGTTCTGGGTTTGGTCTCATGTGCCCTTCTCTCCTTTGTGAACCAGTTTTTCTGGTACAGGACTCAGCCGTTGACTGTGACATCCATCAGTGCACAGATTGCTGTGGTGCCAGTCGGACATTTCATGGCCAGAGTGCTACCCACGCGCCGTTTTTTCCAAGGTACTCGGTTTGAGTTCACCATGAATCCGGGGCCTTTTAATGTCAAGGAACATGTTTTGATCACTATATTTGCGAATTGCGGGGCTGGAACTGTTTATGCTACTCATATCTTGACTGCTGTTAAGATCTTCTACAAGAGGAAGCTCACTTTTCTTCCTGCCTTTATTGTTATGCTCACCACCCAGGTGCTGGGGTTTGGTTGGGCTGGAATTTTCAGAAAATATCTGGTTGAGCCAGAGAAGATGTGGTGGCCCGGTAATCTGGTTCAGGTTTCATTGTTCAGTGCTCTGCATGAGAAGAGCAAAAGGCCTAAAGGAAGCATGACTCGTACCCAGTTCTTCCTCCTAGTGATGATTGCCAGTTTTGCATACTACATCTTCCCCGGCTATCTTTTCATTATGCTAACGTCTCTCTCTTGGGTGTGTTGGATTCGACCCAATTCTATTCTAGTTAACCAGCTGGGTTCTGGCATGAATGGCCTTGGAATCGGTTCTTTTGGGATTGACTGGTCTACTATTTCAGCATATCTTGGTACTCCTTTGGCTAGCCCATGGTTCGCCTCGGCCAACATTGCTGTTGGATTTTTCGTTGTCATGTATGTGATATCACCCATCGCTTACTGGTCTAATATCTACAGCGCCAAGACATTCCCAATATTTTCTAGCCATTTGTTCATGGCTAATGGTTCAAGATACGAGGTCCTCGATATCATTAGTTCCAGTTTTCGACTTGATCGCGGTGAATATGCAAAGAAAGGGCCTCTGCATATGAGCACCTTTTTCGCTTTTACTTATGGTCTTGGATTTGCTGCACTTTCTGCTACAATTATGCATGTTCTACTTTTTCATGCAAGGGATATACTGGACTCGTTTCATGGAAATAAGAAAAAGGATGTCCATGCAAGGCTTATGAAGAATTACAAATCGGTGCCAACATTGTGGTTTATCCTCATCCTTGCGATCAATATTGCTCTTATCCTGTTTGCTTCTGTGTATTACAAGGAGTCACTTCAGTTGCCTTGGTGGGGTGCATTGCTTGCTTGTTTCATGGCCTTTGCTTTCACATACCCAATCGGTGTCATCTATGCCACAACAAACATGGAACCGGGTTTGAATATTATCACAGAATATGTGATTGGATACCTTTACCCTGAGCATCCTGTAGCCAACATGTGCTTCAAAGTGTATGGTTACATAAGCATGACACAAGCTCTATCATTTGTGTCGGATTTTAAGCTCGGTCACTACATGAAGATTCCACCAAGAGCAATGTTCACAGCACAGATGGTAGGAACCGTTGTAGCAGTGATTGTATACCAGTGCACAGCATGGTGGCTGATGGCAGACATTCAGAACCTCTGTGATACCTCCCTGCTGCCAGCGGATAGCCCTTGGACCTGTCCAATGGACCGTGTGTTCTTTGATGCATCTGTTATCTGGGGTCTCGTTGGACCCCGCAGAATTTTTGGAAACCTTGGTGAATACAGTAACATCAACTGGTTTTTCCTTGGTGGCGCTATTGCCCCGGTGCTTGTTTGGCTTGCGCACTGGACTTTCCCCAAACAAAAATGGATTCTTGCTGTTAACATGCCTGTCTTGCTAGGTGCCACAGGAATGATGCCCCCAGCCACTGCTATAAACTTTACAAGTTGGATATTTTTGGCATTTGTTTCGGGTTTTGTTGTCTTCAGGTACCGGCAAGATTTGTGGAAGAAGTACAACTATGTTGTCTCTGGTGGTCTTGATGCCGGAACTGCCTTTGTTACAATATTGGTGTTCCTTACCTTGCAGTCCCAGAACATTAATCTCGACTGGTGGGGGAATAAAGGAGAGCCCTGCCCCTTGGCTTCATGCCCTACCGCCAAAGGGGTTGTAGTTGCTGGCTGCCCGGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0015833 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0022857 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

728

Amino Acids

81.94

Weight (kDa)

9.11

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	38 - 690	1.8e-170	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27730 AT5G53510 AT5G53520
fragaria_vesca	FvH4_7g32230
malus_domestica	MD07G1295600.v1.1
prunus_persica	Prupe.2G315100_v2.0.a1
pyrus_communis	pycom07g26830
rosa_chinensis	RchiOBHm_Chr1g0381901 RchiOBHm_Chr1g0381921
rosa_laevigata	RLG00000026200 RLG00000026201
rosa_multiflora	Rmu_co8241265.1_g000001 Rmu_co8483163.1_g000001 Rmu_sc0010238.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278340 Rroxscaffold_4G00278350
rosa_rugosa	Rorug01G0432100 Rorug01G0432200
rosa_samantha	Rh1AG455200 Rh1AG455400 Rh1BG412400 Rh1BG412600 Rh1CG427100 Rh1CG427400 Rh1DG444700 Rh1DG444900
rosa_wichuraiana	Rw1G039710 Rw1G041370 Rw1G041380 Rw1G041470 Rw1G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1833
Acc65I	GGTACC	1 cut(s)	1980
AccB1I	GGYRCC	4 cut(s)	235, 1216, 1892, 1980
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	2 cut(s)	800, 1602
AccII	CGCG	2 cut(s)	274, 1026
AciI	CCGC	5 cut(s)	369, 1026, 1670, 1744, 2148
AcoI	YGGCCR	2 cut(s)	255, 852
AcsI	RAATTY	2 cut(s)	498, 1749
AcuI	CTGAAG	2 cut(s)	1283, 1960
AfaI	GTAC	7 cut(s)	19, 185, 292, 619, 823, 1982, 2006
AfeI	AGCGCT	1 cut(s)	50
AfiI	CCNNNNNNNGG	4 cut(s)	127, 478, 1313, 2154
AflIII	ACRYGT	2 cut(s)	340, 1458
AgsI	TTSAA	3 cut(s)	978, 1402, 1468
AjnI	CCWGG	1 cut(s)	471
AjuI	GAANNNNNNNTTGG	4 cut(s)	1407, 1439, 1448, 1480
AleI	CACNNNNGTG	1 cut(s)	473
AloI	GAACNNNNNNTCC	2 cut(s)	1688, 1720
AluBI	AGCT	4 cut(s)	433, 748, 1499, 1525
AluI	AGCT	4 cut(s)	433, 748, 1499, 1525
Alw21I	GWGCWC	5 cut(s)	114, 223, 577, 1064, 1613
Alw26I	GTCTC	4 cut(s)	148, 702, 1736, 2023
Alw44I	GTGCAC	2 cut(s)	219, 1609
AlwNI	CAGNNNCTG	2 cut(s)	478, 1919
Aor51HI	AGCGCT	1 cut(s)	50
AoxI	GGCC	8 cut(s)	255, 320, 539, 596, 766, 852, 1046, 1338
ApaLI	GTGCAC	2 cut(s)	219, 1609
ApeKI	GCWGC	3 cut(s)	1097, 1663, 2172
ApoI	RAATTY	2 cut(s)	498, 1749
AseI	ATTAAT	1 cut(s)	2091
Asp700I	GAANNNNTTC	1 cut(s)	778
Asp718I	GGTACC	1 cut(s)	1980
AspLEI	GCGC	5 cut(s)	51, 276, 929, 1805, 1834
AspS9I	GGNCC	8 cut(s)	320, 540, 988, 1046, 1683, 1696, 1739, 2179
AsuC2I	CCSGG	6 cut(s)	318, 543, 672, 1395, 1814, 2177
AsuHPI	GGTGA	5 cut(s)	298, 457, 888, 1040, 1778
AsuNHI	GCTAGC	1 cut(s)	833
AvaII	GGWCC	5 cut(s)	988, 1683, 1696, 1739, 2179
BaeGI	GKGCMC	3 cut(s)	154, 223, 1613
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	4 cut(s)	235, 1216, 1892, 1980
BanII	GRGCYC	1 cut(s)	2124
BbsI	GAAGAC	1 cut(s)	1966
Bbv12I	GWGCWC	5 cut(s)	114, 223, 577, 1064, 1613
BbvI	GCAGC	3 cut(s)	1084, 1650, 2159
BccI	CCATC	4 cut(s)	221, 908, 1567, 1621
BceAI	ACGGC	2 cut(s)	181, 261
BcgI	CGANNNNNNTGC	4 cut(s)	1051, 1085, 1941, 1975
BciT130I	CCWGG	1 cut(s)	473
BciVI	GTATCC	1 cut(s)	1421
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	6 cut(s)	318, 543, 672, 1395, 1814, 2177
BcoDI	GTCTC	4 cut(s)	148, 702, 1736, 2023
BfaI	CTAG	5 cut(s)	635, 737, 834, 951, 1889
BfmI	CTRYAG	2 cut(s)	922, 1449
BfoI	RGCGCY	3 cut(s)	52, 930, 1806
BfuI	GTATCC	1 cut(s)	1421
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	3 cut(s)	1098, 1664, 2173
BlsI	GCNGC	3 cut(s)	1099, 1665, 2174
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	7 cut(s)	318, 473, 543, 672, 1395, 1814, 2177
Bme18I	GGWCC	5 cut(s)	988, 1683, 1696, 1739, 2179
BmgT120I	GGNCC	8 cut(s)	320, 540, 988, 1046, 1683, 1696, 1739, 2179
BmiI	GGNNCC	8 cut(s)	237, 321, 1218, 1392, 1582, 1741, 1894, 1982
BmrFI	CCNGG	7 cut(s)	318, 473, 543, 672, 1395, 1814, 2177
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	5 cut(s)	1453, 1702, 1724, 1896, 2023
BmtI	GCTAGC	1 cut(s)	837
BmuI	ACTGGG	1 cut(s)	616
BpiI	GAAGAC	1 cut(s)	1966
Bpu10I	CCTNAGC	1 cut(s)	1440
BpuMI	CCSGG	6 cut(s)	318, 543, 672, 1395, 1814, 2177
BsaI	GGTCTC	2 cut(s)	148, 1736
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 478, 1313, 2154
Bse118I	RCCGGY	2 cut(s)	106, 1983
Bse3DI	GCAATG	3 cut(s)	858, 1319, 1563
BseBI	CCWGG	1 cut(s)	473
BseGI	GGATG	4 cut(s)	209, 1186, 1239, 1444
BseLI	CCNNNNNNNGG	4 cut(s)	127, 478, 1313, 2154
BseMI	GCAATG	3 cut(s)	858, 1319, 1563
BseMII	CTCAG	2 cut(s)	206, 1431
BseSI	GKGCMC	3 cut(s)	154, 223, 1613
BseXI	GCAGC	3 cut(s)	1084, 1650, 2159
BseYI	CCCAGC	3 cut(s)	478, 748, 1912
BsgI	GTGCAG	1 cut(s)	1083
Bsh1236I	CGCG	2 cut(s)	274, 1026
BshFI	GGCC	8 cut(s)	257, 322, 541, 598, 768, 854, 1048, 1340
BshNI	GGYRCC	4 cut(s)	235, 1216, 1892, 1980
BsiHKAI	GWGCWC	5 cut(s)	114, 223, 577, 1064, 1613
BsiSI	CCGG	9 cut(s)	107, 317, 543, 672, 1394, 1814, 1984, 2037, 2177
BslFI	GGGAC	1 cut(s)	2065
BslI	CCNNNNNNNGG	4 cut(s)	127, 478, 1313, 2154
BsmAI	GTCTC	4 cut(s)	148, 702, 1736, 2023
BsmBI	CGTCTC	1 cut(s)	702
BsmFI	GGGAC	1 cut(s)	2065
BsnI	GGCC	8 cut(s)	257, 322, 541, 598, 768, 854, 1048, 1340
Bso31I	GGTCTC	2 cut(s)	148, 1736
Bsp1286I	GDGCHC	7 cut(s)	114, 154, 223, 577, 1064, 1613, 2124
Bsp143I	GATC	4 cut(s)	348, 414, 1021, 1248
Bsp19I	CCATGG	1 cut(s)	839
BspACI	CCGC	5 cut(s)	369, 1026, 1670, 1744, 2148
BspANI	GGCC	8 cut(s)	257, 322, 541, 598, 768, 854, 1048, 1340
BspCNI	CTCAG	2 cut(s)	205, 1432
BspFNI	CGCG	2 cut(s)	274, 1026
BspLI	GGNNCC	8 cut(s)	237, 321, 1218, 1392, 1582, 1741, 1894, 1982
BspOI	GCTAGC	1 cut(s)	837
BspQI	GCTCTTC	1 cut(s)	581
BspT107I	GGYRCC	4 cut(s)	235, 1216, 1892, 1980
BspTNI	GGTCTC	2 cut(s)	148, 1736
BsrDI	GCAATG	3 cut(s)	858, 1319, 1563
BsrFI	RCCGGY	2 cut(s)	106, 1983
BssAI	RCCGGY	2 cut(s)	106, 1983
BssMI	GATC	4 cut(s)	348, 414, 1021, 1248
BssNAI	GTATAC	1 cut(s)	1603
BssT1I	CCWWGG	8 cut(s)	286, 769, 839, 1307, 1679, 1762, 1795, 2130
Bst1107I	GTATAC	1 cut(s)	1603
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	6 cut(s)	79, 205, 382, 1585, 1700, 1775
Bst6I	CTCTTC	1 cut(s)	581
BstAPI	GCANNNNNTGC	3 cut(s)	227, 1106, 1325
BstC8I	GCNNGC	5 cut(s)	835, 1326, 1668, 1830, 2170
BstDEI	CTNAG	2 cut(s)	192, 1440
BstDSI	CCRYGG	1 cut(s)	839
BstF5I	GGATG	4 cut(s)	209, 1186, 1239, 1444
BstFNI	CGCG	2 cut(s)	274, 1026
BstH2I	RGCGCY	3 cut(s)	52, 930, 1806
BstHHI	GCGC	5 cut(s)	51, 276, 929, 1805, 1834
BstKTI	GATC	4 cut(s)	351, 417, 1024, 1251
BstMAI	GTCTC	4 cut(s)	148, 702, 1736, 2023
BstMBI	GATC	4 cut(s)	348, 414, 1021, 1248
BstNI	CCWGG	1 cut(s)	473
BstNSI	RCATGY	4 cut(s)	344, 1124, 1462, 1879
BstSCI	CCNGG	7 cut(s)	316, 471, 541, 670, 1393, 1812, 2175
BstSFI	CTRYAG	2 cut(s)	922, 1449
BstSLI	GKGCMC	3 cut(s)	154, 223, 1613
BstUI	CGCG	2 cut(s)	274, 1026
BstV1I	GCAGC	3 cut(s)	1084, 1650, 2159
BstV2I	GAAGAC	1 cut(s)	1966
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	1227
BstYI	RGATCY	1 cut(s)	414
BstZ17I	GTATAC	1 cut(s)	1603
BsuI	GTATCC	1 cut(s)	1421
BsuRI	GGCC	8 cut(s)	257, 322, 541, 598, 768, 854, 1048, 1340
BtgI	CCRYGG	1 cut(s)	839
BtgZI	GCGATG	1 cut(s)	886
BtsCI	GGATG	4 cut(s)	209, 1186, 1239, 1444
BtsI	GCAGTG	2 cut(s)	1599, 1917
BtsIMutI	CAGTG	7 cut(s)	84, 223, 577, 1599, 1613, 1834, 1917
Cac8I	GCNNGC	5 cut(s)	835, 1326, 1668, 1830, 2170
CaiI	CAGNNNCTG	2 cut(s)	478, 1919
CfoI	GCGC	5 cut(s)	51, 276, 929, 1805, 1834
Cfr10I	RCCGGY	2 cut(s)	106, 1983
Cfr13I	GGNCC	8 cut(s)	320, 540, 988, 1046, 1683, 1696, 1739, 2179
Csp6I	GTAC	7 cut(s)	18, 184, 291, 618, 822, 1981, 2005
CspCI	CAANNNNNGTGG	2 cut(s)	1976, 2011
CviQI	GTAC	7 cut(s)	18, 184, 291, 618, 822, 1981, 2005
DdeI	CTNAG	2 cut(s)	192, 1440
DpnI	GATC	4 cut(s)	350, 416, 1023, 1250
DpnII	GATC	4 cut(s)	348, 414, 1021, 1248
EaeI	YGGCCR	2 cut(s)	255, 852
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	8 cut(s)	286, 769, 839, 1307, 1679, 1762, 1795, 2130
Eco147I	AGGCCT	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	2124
Eco31I	GGTCTC	2 cut(s)	148, 1736
Eco32I	GATATC	2 cut(s)	894, 997
Eco47I	GGWCC	5 cut(s)	988, 1683, 1696, 1739, 2179
Eco47III	AGCGCT	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	1283, 1960
EcoO109I	RGGNCCY	3 cut(s)	320, 988, 1046
EcoRII	CCWGG	1 cut(s)	471
EcoRV	GATATC	2 cut(s)	894, 997
EcoT14I	CCWWGG	8 cut(s)	286, 769, 839, 1307, 1679, 1762, 1795, 2130
EcoT22I	ATGCAT	2 cut(s)	1122, 1717
EcoT38I	GRGCYC	1 cut(s)	2124
ErhI	CCWWGG	8 cut(s)	286, 769, 839, 1307, 1679, 1762, 1795, 2130
Esp3I	CGTCTC	1 cut(s)	702
FaqI	GGGAC	1 cut(s)	2065
FauI	CCCGC	2 cut(s)	362, 1751
FauNDI	CATATG	1 cut(s)	1056
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	2 cut(s)	800, 1602
Fnu4HI	GCNGC	3 cut(s)	1098, 1664, 2173
FokI	GGATG	4 cut(s)	196, 1193, 1226, 1431
FriOI	GRGCYC	1 cut(s)	2124
Fsp4HI	GCNGC	3 cut(s)	1098, 1664, 2173
FspBI	CTAG	5 cut(s)	635, 737, 834, 951, 1889
FspI	TGCGCA	1 cut(s)	1833
GlaI	GCGC	5 cut(s)	50, 275, 928, 1804, 1833
GluI	GCNGC	3 cut(s)	1098, 1664, 2173
GsaI	CCCAGC	3 cut(s)	482, 752, 1916
HaeII	RGCGCY	3 cut(s)	52, 930, 1806
HaeIII	GGCC	8 cut(s)	257, 322, 541, 598, 768, 854, 1048, 1340
HapII	CCGG	9 cut(s)	107, 317, 543, 672, 1394, 1814, 1984, 2037, 2177
HhaI	GCGC	5 cut(s)	51, 276, 929, 1805, 1834
Hin6I	GCGC	5 cut(s)	49, 274, 927, 1803, 1832
HinP1I	GCGC	5 cut(s)	49, 274, 927, 1803, 1832
HincII	GTYRAC	4 cut(s)	75, 201, 742, 1873
HindII	GTYRAC	4 cut(s)	75, 201, 742, 1873
HinfI	GANTC	9 cut(s)	190, 313, 613, 718, 774, 1154, 1292, 1543, 1861
HpaI	GTTAAC	2 cut(s)	742, 1873
HpaII	CCGG	9 cut(s)	107, 317, 543, 672, 1394, 1814, 1984, 2037, 2177
HphI	GGTGA	5 cut(s)	298, 457, 888, 1040, 1778
Hpy188I	TCNGA	6 cut(s)	122, 245, 506, 1516, 1641, 2186
Hpy188III	TCNNGA	4 cut(s)	400, 978, 2030, 2096
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	6 cut(s)	79, 205, 382, 1585, 1700, 1775
HpyCH4IV	ACGT	1 cut(s)	695
HpyF3I	CTNAG	2 cut(s)	192, 1440
HpySE526I	ACGT	1 cut(s)	695
HspAI	GCGC	5 cut(s)	49, 274, 927, 1803, 1832
KpnI	GGTACC	1 cut(s)	1984
Ksp22I	TGATCA	1 cut(s)	348
KspAI	GTTAAC	2 cut(s)	742, 1873
Kzo9I	GATC	4 cut(s)	348, 414, 1021, 1248
LguI	GCTCTTC	1 cut(s)	581
Lsp1109I	GCAGC	3 cut(s)	1084, 1650, 2159
LweI	GCATC	5 cut(s)	1453, 1702, 1724, 1896, 2023
MaeI	CTAG	5 cut(s)	635, 737, 834, 951, 1889
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	6 cut(s)	205, 1293, 1478, 1529, 1775, 2050
MalI	GATC	4 cut(s)	350, 416, 1023, 1250
MboI	GATC	4 cut(s)	348, 414, 1021, 1248
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	7 cut(s)	114, 154, 223, 577, 1064, 1613, 2124
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	6 cut(s)	364, 498, 727, 1113, 1204, 1749
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	4 cut(s)	184, 607, 1148, 1301
MmeI	TCCRAC	6 cut(s)	223, 695, 847, 1494, 1717, 1919
MnlI	CCTC	9 cut(s)	420, 641, 859, 979, 1001, 1059, 1247, 1655, 1666
Mox20I	TGGCCA	1 cut(s)	257
Mph1103I	ATGCAT	2 cut(s)	1122, 1717
MroXI	GAANNNNTTC	1 cut(s)	778
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	6 cut(s)	327, 411, 741, 1521, 1872, 2091
MslI	CAYNNNNRTG	4 cut(s)	473, 887, 1487, 1901
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	2 cut(s)	748, 1670
MspI	CCGG	9 cut(s)	107, 317, 543, 672, 1394, 1814, 1984, 2037, 2177
MspR9I	CCNGG	7 cut(s)	318, 473, 543, 672, 1395, 1814, 2177
MvaI	CCWGG	1 cut(s)	473
MvnI	CGCG	2 cut(s)	274, 1026
NciI	CCSGG	6 cut(s)	318, 543, 672, 1395, 1814, 2177
NcoI	CCATGG	1 cut(s)	839
NdeI	CATATG	1 cut(s)	1056
NdeII	GATC	4 cut(s)	348, 414, 1021, 1248
NheI	GCTAGC	1 cut(s)	833
NlaIV	GGNNCC	8 cut(s)	237, 321, 1218, 1392, 1582, 1741, 1894, 1982
NmeAIII	GCCGAG	1 cut(s)	830
NmuCI	GTSAC	3 cut(s)	205, 1293, 1529
NsbI	TGCGCA	1 cut(s)	1833
NsiI	ATGCAT	2 cut(s)	1122, 1717
NspI	RCATGY	4 cut(s)	344, 1124, 1462, 1879
OliI	CACNNNNGTG	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	598
PciI	ACATGT	2 cut(s)	340, 1458
PciSI	GCTCTTC	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	1 cut(s)	990
PdmI	GAANNNNTTC	1 cut(s)	778
PfeI	GAWTC	5 cut(s)	313, 718, 774, 1543, 1861
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	3 cut(s)	1099, 1665, 2174
PleI	GAGTC	4 cut(s)	184, 607, 1148, 1300
PpsI	GAGTC	4 cut(s)	184, 607, 1148, 1300
PpuMI	RGGWCCY	1 cut(s)	988
PscI	ACATGT	2 cut(s)	340, 1458
PshBI	ATTAAT	1 cut(s)	2091
Psp5II	RGGWCCY	1 cut(s)	988
Psp6I	CCWGG	1 cut(s)	471
PspFI	CCCAGC	3 cut(s)	478, 748, 1912
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	8 cut(s)	237, 321, 1218, 1392, 1582, 1741, 1894, 1982
PspPI	GGNCC	8 cut(s)	320, 540, 988, 1046, 1683, 1696, 1739, 2179
PspPPI	RGGWCCY	1 cut(s)	988
PstNI	CAGNNNCTG	2 cut(s)	478, 1919
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	7 cut(s)	19, 185, 292, 619, 823, 1982, 2006
RsaNI	GTAC	7 cut(s)	18, 184, 291, 618, 822, 1981, 2005
RseI	CAYNNNNRTG	4 cut(s)	473, 887, 1487, 1901
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	6 cut(s)	327, 411, 741, 1521, 1872, 2091
SatI	GCNGC	3 cut(s)	1098, 1664, 2173
Sau3AI	GATC	4 cut(s)	348, 414, 1021, 1248
Sau96I	GGNCC	8 cut(s)	320, 540, 988, 1046, 1683, 1696, 1739, 2179
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	4 cut(s)	184, 607, 1148, 1301
ScrFI	CCNGG	7 cut(s)	318, 473, 543, 672, 1395, 1814, 2177
SduI	GDGCHC	7 cut(s)	114, 154, 223, 577, 1064, 1613, 2124
SfaNI	GCATC	5 cut(s)	1453, 1702, 1724, 1896, 2023
SfcI	CTRYAG	2 cut(s)	922, 1449
SinI	GGWCC	5 cut(s)	988, 1683, 1696, 1739, 2179
SmiMI	CAYNNNNRTG	4 cut(s)	473, 887, 1487, 1901
Sse9I	AATT	6 cut(s)	364, 498, 727, 1113, 1204, 1749
SseBI	AGGCCT	1 cut(s)	598
SsiI	CCGC	5 cut(s)	369, 1026, 1670, 1744, 2148
SspI	AATATT	4 cut(s)	945, 1255, 1405, 2058
SspMI	CTAG	5 cut(s)	635, 737, 834, 951, 1889
StuI	AGGCCT	1 cut(s)	598
StyD4I	CCNGG	7 cut(s)	316, 471, 541, 670, 1393, 1812, 2175
StyI	CCWWGG	8 cut(s)	286, 769, 839, 1307, 1679, 1762, 1795, 2130
TaaI	ACNGT	6 cut(s)	79, 205, 382, 1585, 1700, 1775
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	4 cut(s)	721, 993, 1015, 2097
TaqII	GACCGA	1 cut(s)	1517
TasI	AATT	6 cut(s)	364, 498, 727, 1113, 1204, 1749
TatI	WGTACW	2 cut(s)	17, 2004
TfiI	GAWTC	5 cut(s)	313, 718, 774, 1543, 1861
Tru1I	TTAA	6 cut(s)	327, 411, 741, 1521, 1872, 2091
Tru9I	TTAA	6 cut(s)	327, 411, 741, 1521, 1872, 2091
TscAI	CASTG	7 cut(s)	84, 223, 577, 1599, 1613, 1841, 1924
TseFI	GTSAC	3 cut(s)	205, 1293, 1529
TseI	GCWGC	3 cut(s)	1097, 1663, 2172
Tsp45I	GTSAC	3 cut(s)	205, 1293, 1529
TspRI	CASTG	7 cut(s)	84, 223, 577, 1599, 1613, 1841, 1924
Van91I	CCANNNNNTGG	1 cut(s)	478
VneI	GTGCAC	2 cut(s)	219, 1609
VpaK11BI	GGWCC	5 cut(s)	988, 1683, 1696, 1739, 2179
VspI	ATTAAT	1 cut(s)	2091
XapI	RAATTY	2 cut(s)	498, 1749
XceI	RCATGY	4 cut(s)	344, 1124, 1462, 1879
XcmI	CCANNNNNNNNNTGG	4 cut(s)	475, 531, 752, 1384
XmiI	GTMKAC	2 cut(s)	800, 1602
XmnI	GAANNNNTTC	1 cut(s)	778
XspI	CTAG	5 cut(s)	635, 737, 834, 951, 1889
ZrmI	AGTACT	1 cut(s)	19
Zsp2I	ATGCAT	2 cut(s)	1122, 1717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.