Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004564

Physical Location & Seq

Genomic Coordinates Forward (+)

68521748 .. 68529964

Gene Structure 8217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG427100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGCAGCCACTGCTATGGATGCCTTGCAAGGAAGATGAGCGCTCTGTCATTGAGCAAGTGGAGTTGACAGTGCCAAAAACCGATGACCCTACCTTGCCGGTGCTCACATTCCGAATGTGGGTTCTGGGTTTGGTCTCATGTGTCCTTCTCTCCTTTGTGAACCAGTTTTTCTGGTACAGGACTCAGCCGTTGACTGTGTCATCCATCAGTGCACAGATTGCTGTGGTGCCAGTCGGACATTTCATGGCGAGAGTGCTGCCCACGCGCCGTTTTTTCCAAGGTACTCGGTTTGAGTTCACCATGAATCCGGGGCCTTTTAATGTCAAGGAACATGTTTTGATCACTATATTTGCGAATTGCGGGGCTGGAACTGTTTATGCTACTCATATCTTGACTGCTGTTAAGATCTTCTACAAGAGGAAGCTCACTTTTCTTCCTGCCTTTATTGTTATGCTCACCACTCAGGTGCTGGGGTTTGGTTGGGCTGGAATTTTCAGAAAATATCTGGTTGAGCCAGAGAAGATGTGGTGGCCCGGTAATCTGGTTCAGGTTTCATTGTTCAGTGCTCTGCATGAGAAGAGCAAAAGGCCTAAAGGAAGCATGACTCGTACCCAGTTCTTCCTCCTAGTGATGATTGCTAGTTTTGCATACTATATCTTCCCCGGCTATCTTTTCATTATGCTAACGTCTCTCTCTTGGGTGTGTTGGATTCGACCCAATTCTATTCTAGTTAACCAGCTGGGTTCTGGCATGAAAGGCCTTGGAATCGGTTCTTTTGGGATTGACTGGTCTACTATTTCAGCATATCTTGGTACTCCTTTGGCTAGCCCATGGTTCGCCTCGGCCAACATTGCTGTTGGATTTTTCGTTGTCATGTATGTGATATCACCCATCGCTTACTGGTCTAATATCTACGGCGCCAAGACATTCCCAATATTTTCTAGCCATTTGTTCATGGCTAATGGTTCAAGATACGAGGTCCTCGATATCATTGGTTCCAGTTTTCAACTTGATCGTGGTGAATATGCAAAGAAAGGGCCTCTGCATTTGAGCACCTTTTTTGCTTTTACTTATGGTTTTGGATTTGCTGCACTTTCTGCTACAATTATGCATGTTCTACTTTTTCATGCAAGGGATATACTGGACTCGTTTCATGGAAATAAGAAAAAGGATGTCCATGCAAGGCTTATGAAGAATTACAAATCGGTGCCAACATTGTGGTTTATCCTCATCCTTGCGATAAATATTGCTCTTATCCTGTTTGCTTCTGTGTATTACAAGGAGTCACTTCAATTGCCTTGGTGGGGTGCATTGCTTGCTTGTTTCATGGCCTTTGCTTTCACATACCCAATCGGTGTCATCTATGCCACAACAAACATGGAACCGGGTTTGAATATTATCACAGAATATGTGATTGGATACCTTTACCCTGAGCATCCTGTAGCCAACATGTGCTTCAAAGTGTATGGTTACATAAGCATGACACAAGCTCTATCATTTGTGTCGGATTTTAAGCTTGGTCACTACATGAAGATTCCGCCAAGAGCAATGTTCACAGCACAGATGGTAGGAACTGTTGTAGCAGTGGTTGTATACCAGTGCACAGCATGGTGGCTGATGGCAGACATTCAGAACCTCTGTGATACCTCCCTGCTGCCAGCGGATAGCCCTTGGACCTGTCCAATGGACCGTGTGTTCTTTGATGCGTCTGTTATCTGGGGTCTCGTTGGACCCCGCAGAATTTTTGGAAACCTCGGTGAATACAGTAACATCAACTGGTTCTTCCTTGGTGGCGCCATTGCCCCGGTTCTTGTTTGGCTTGCGCACTGGACTTTCCCCAAACAAAAATGGATTCTTGCTGTTAACATGCCTGTCTTGCTAGGTGCCACAGGAATGATGCCCCCTGCCACTGCTATAAACTTTACAAGTTGGATATTTTTGGCATTTGTTTCGGGTTTTGTTGTCTTCAGGTACCGGCAAGATTTGTGGAAGAAGTACAACTATGTTGTCTCTGGTGGTCTTGATGCCGGAACTGCCTTTGTTACAATATTGGTGTTCCTTACCCTGCAGTCCCAGAACATTAATCTCGACTGGTGGGGGAATAAAGGAGAGCCCTGCCCCTTGGCTACATGCCCTACCGCCAAAGGGGTTGTAGTTGCTAACTGCCCGGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0015833 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0022857 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

725

Amino Acids

81.72

Weight (kDa)

9.22

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	35 - 687	3.7e-170	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27730 AT5G53510 AT5G53520
fragaria_vesca	FvH4_7g32230
malus_domestica	MD07G1295600.v1.1
prunus_persica	Prupe.2G315100_v2.0.a1
pyrus_communis	pycom07g26830
rosa_chinensis	RchiOBHm_Chr1g0381901 RchiOBHm_Chr1g0381921
rosa_laevigata	RLG00000026200 RLG00000026201
rosa_multiflora	Rmu_co8241265.1_g000001 Rmu_co8483163.1_g000001 Rmu_sc0010238.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278340 Rroxscaffold_4G00278350
rosa_rugosa	Rorug01G0432100 Rorug01G0432200
rosa_samantha	Rh1AG455200 Rh1AG455400 Rh1BG412400 Rh1BG412600 Rh1CG427100 Rh1CG427400 Rh1DG444700 Rh1DG444900
rosa_wichuraiana	Rw1G039710 Rw1G041370 Rw1G041380 Rw1G041470 Rw1G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1824
Acc65I	GGTACC	1 cut(s)	1971
AccB1I	GGYRCC	6 cut(s)	226, 917, 1207, 1793, 1883, 1971
AccI	GTMKAC	2 cut(s)	791, 1593
AccII	CGCG	1 cut(s)	265
AciI	CCGC	5 cut(s)	360, 1538, 1661, 1735, 2139
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	2 cut(s)	489, 1740
AcuI	CTGAAG	1 cut(s)	1951
AcyI	GRCGYC	2 cut(s)	918, 1794
AfaI	GTAC	6 cut(s)	176, 283, 610, 814, 1973, 1997
AfeI	AGCGCT	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	118, 1304, 2145
AflIII	ACRYGT	2 cut(s)	331, 1449
AgsI	TTSAA	5 cut(s)	969, 1007, 1292, 1393, 1459
AjuI	GAANNNNNNNTTGG	4 cut(s)	1398, 1430, 1439, 1471
AleI	CACNNNNGTG	1 cut(s)	464
AloI	GAACNNNNNNTCC	2 cut(s)	1679, 1711
AluBI	AGCT	4 cut(s)	424, 739, 1490, 1516
AluI	AGCT	4 cut(s)	424, 739, 1490, 1516
Alw21I	GWGCWC	5 cut(s)	105, 214, 568, 1055, 1604
Alw26I	GTCTC	4 cut(s)	139, 693, 1727, 2014
Alw44I	GTGCAC	2 cut(s)	210, 1600
AlwNI	CAGNNNCTG	2 cut(s)	10, 469
Aor51HI	AGCGCT	1 cut(s)	41
AoxI	GGCC	7 cut(s)	311, 530, 587, 757, 843, 1037, 1329
ApaLI	GTGCAC	2 cut(s)	210, 1600
ApeKI	GCWGC	4 cut(s)	4, 256, 1088, 1654
ApoI	RAATTY	2 cut(s)	489, 1740
AseI	ATTAAT	1 cut(s)	2082
Asp700I	GAANNNNTTC	1 cut(s)	769
Asp718I	GGTACC	1 cut(s)	1971
AspLEI	GCGC	5 cut(s)	42, 267, 920, 1796, 1825
AspS9I	GGNCC	8 cut(s)	311, 531, 979, 1037, 1674, 1687, 1730, 2170
AsuC2I	CCSGG	6 cut(s)	309, 534, 663, 1386, 1805, 2168
AsuHPI	GGTGA	5 cut(s)	289, 448, 879, 1031, 1769
AsuNHI	GCTAGC	1 cut(s)	824
AvaII	GGWCC	5 cut(s)	979, 1674, 1687, 1730, 2170
BaeGI	GKGCMC	2 cut(s)	214, 1604
BanI	GGYRCC	6 cut(s)	226, 917, 1207, 1793, 1883, 1971
BanII	GRGCYC	1 cut(s)	2115
BbsI	GAAGAC	1 cut(s)	1957
Bbv12I	GWGCWC	5 cut(s)	105, 214, 568, 1055, 1604
BbvI	GCAGC	4 cut(s)	16, 243, 1075, 1641
BccI	CCATC	4 cut(s)	212, 899, 1558, 1612
BceAI	ACGGC	3 cut(s)	172, 252, 931
BcgI	CGANNNNNNTGC	4 cut(s)	238, 272, 1932, 1966
BciVI	GTATCC	1 cut(s)	1412
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	6 cut(s)	309, 534, 663, 1386, 1805, 2168
BcoDI	GTCTC	4 cut(s)	139, 693, 1727, 2014
BfaI	CTAG	6 cut(s)	626, 639, 728, 825, 942, 1880
BfmI	CTRYAG	2 cut(s)	1440, 2066
BfoI	RGCGCY	3 cut(s)	43, 921, 1797
BfuI	GTATCC	1 cut(s)	1412
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	4 cut(s)	5, 257, 1089, 1655
BlsI	GCNGC	4 cut(s)	6, 258, 1090, 1656
Bme1390I	CCNGG	6 cut(s)	309, 534, 663, 1386, 1805, 2168
Bme18I	GGWCC	5 cut(s)	979, 1674, 1687, 1730, 2170
BmgT120I	GGNCC	8 cut(s)	311, 531, 979, 1037, 1674, 1687, 1730, 2170
BmrFI	CCNGG	6 cut(s)	309, 534, 663, 1386, 1805, 2168
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	5 cut(s)	9, 1444, 1693, 1887, 2014
BmtI	GCTAGC	1 cut(s)	828
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	1957
Bpu10I	CCTNAGC	1 cut(s)	1431
BpuMI	CCSGG	6 cut(s)	309, 534, 663, 1386, 1805, 2168
BsaHI	GRCGYC	2 cut(s)	918, 1794
BsaI	GGTCTC	2 cut(s)	139, 1727
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 1304, 2145
Bse118I	RCCGGY	2 cut(s)	97, 1974
Bse3DI	GCAATG	4 cut(s)	849, 1310, 1554, 1797
BseGI	GGATG	5 cut(s)	24, 200, 1177, 1230, 1435
BseLI	CCNNNNNNNGG	3 cut(s)	118, 1304, 2145
BseMI	GCAATG	4 cut(s)	849, 1310, 1554, 1797
BseMII	CTCAG	3 cut(s)	197, 476, 1422
BseSI	GKGCMC	2 cut(s)	214, 1604
BseXI	GCAGC	4 cut(s)	16, 243, 1075, 1641
BseYI	CCCAGC	2 cut(s)	469, 739
BsgI	GTGCAG	1 cut(s)	1074
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	7 cut(s)	313, 532, 589, 759, 845, 1039, 1331
BshNI	GGYRCC	6 cut(s)	226, 917, 1207, 1793, 1883, 1971
BsiHKAI	GWGCWC	5 cut(s)	105, 214, 568, 1055, 1604
BsiSI	CCGG	9 cut(s)	98, 308, 534, 663, 1385, 1805, 1975, 2028, 2168
BslFI	GGGAC	1 cut(s)	2056
BslI	CCNNNNNNNGG	3 cut(s)	118, 1304, 2145
BsmAI	GTCTC	4 cut(s)	139, 693, 1727, 2014
BsmBI	CGTCTC	1 cut(s)	693
BsmFI	GGGAC	1 cut(s)	2056
BsnI	GGCC	7 cut(s)	313, 532, 589, 759, 845, 1039, 1331
Bso31I	GGTCTC	2 cut(s)	139, 1727
Bsp1286I	GDGCHC	6 cut(s)	105, 214, 568, 1055, 1604, 2115
Bsp143I	GATC	3 cut(s)	339, 405, 1012
Bsp19I	CCATGG	1 cut(s)	830
BspACI	CCGC	5 cut(s)	360, 1538, 1661, 1735, 2139
BspANI	GGCC	7 cut(s)	313, 532, 589, 759, 845, 1039, 1331
BspCNI	CTCAG	3 cut(s)	196, 475, 1423
BspFNI	CGCG	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	2070
BspOI	GCTAGC	1 cut(s)	828
BspQI	GCTCTTC	1 cut(s)	572
BspT107I	GGYRCC	6 cut(s)	226, 917, 1207, 1793, 1883, 1971
BspTNI	GGTCTC	2 cut(s)	139, 1727
BsrDI	GCAATG	4 cut(s)	849, 1310, 1554, 1797
BsrFI	RCCGGY	2 cut(s)	97, 1974
BssAI	RCCGGY	2 cut(s)	97, 1974
BssMI	GATC	3 cut(s)	339, 405, 1012
BssNAI	GTATAC	1 cut(s)	1594
BssNI	GRCGYC	2 cut(s)	918, 1794
BssT1I	CCWWGG	7 cut(s)	277, 760, 830, 1298, 1670, 1786, 2121
Bst1107I	GTATAC	1 cut(s)	1594
Bst4CI	ACNGT	6 cut(s)	70, 196, 373, 1576, 1691, 1766
Bst6I	CTCTTC	1 cut(s)	572
BstACI	GRCGYC	2 cut(s)	918, 1794
BstAPI	GCANNNNNTGC	4 cut(s)	10, 218, 1097, 1316
BstC8I	GCNNGC	4 cut(s)	826, 1317, 1659, 1821
BstDEI	CTNAG	3 cut(s)	183, 462, 1431
BstDSI	CCRYGG	1 cut(s)	830
BstF5I	GGATG	5 cut(s)	24, 200, 1177, 1230, 1435
BstFNI	CGCG	1 cut(s)	265
BstH2I	RGCGCY	3 cut(s)	43, 921, 1797
BstHHI	GCGC	5 cut(s)	42, 267, 920, 1796, 1825
BstKTI	GATC	3 cut(s)	342, 408, 1015
BstMAI	GTCTC	4 cut(s)	139, 693, 1727, 2014
BstMBI	GATC	3 cut(s)	339, 405, 1012
BstNSI	RCATGY	5 cut(s)	335, 1115, 1453, 1870, 2133
BstSCI	CCNGG	6 cut(s)	307, 532, 661, 1384, 1803, 2166
BstSFI	CTRYAG	2 cut(s)	1440, 2066
BstSLI	GKGCMC	2 cut(s)	214, 1604
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	4 cut(s)	16, 243, 1075, 1641
BstV2I	GAAGAC	1 cut(s)	1957
BstX2I	RGATCY	1 cut(s)	405
BstXI	CCANNNNNNTGG	2 cut(s)	15, 1218
BstYI	RGATCY	1 cut(s)	405
BstZ17I	GTATAC	1 cut(s)	1594
BsuI	GTATCC	1 cut(s)	1412
BsuRI	GGCC	7 cut(s)	313, 532, 589, 759, 845, 1039, 1331
BtgI	CCRYGG	1 cut(s)	830
BtgZI	GCGATG	1 cut(s)	877
BtsCI	GGATG	5 cut(s)	24, 200, 1177, 1230, 1435
BtsI	GCAGTG	3 cut(s)	8, 1590, 1908
BtsIMutI	CAGTG	8 cut(s)	8, 75, 214, 568, 1590, 1604, 1825, 1908
Cac8I	GCNNGC	4 cut(s)	826, 1317, 1659, 1821
CaiI	CAGNNNCTG	2 cut(s)	10, 469
CfoI	GCGC	5 cut(s)	42, 267, 920, 1796, 1825
Cfr10I	RCCGGY	2 cut(s)	97, 1974
Cfr13I	GGNCC	8 cut(s)	311, 531, 979, 1037, 1674, 1687, 1730, 2170
CseI	GACGC	1 cut(s)	1695
Csp6I	GTAC	6 cut(s)	175, 282, 609, 813, 1972, 1996
CspCI	CAANNNNNGTGG	2 cut(s)	1967, 2002
CviQI	GTAC	6 cut(s)	175, 282, 609, 813, 1972, 1996
DdeI	CTNAG	3 cut(s)	183, 462, 1431
DinI	GGCGCC	2 cut(s)	919, 1795
DpnI	GATC	3 cut(s)	341, 407, 1014
DpnII	GATC	3 cut(s)	339, 405, 1012
EaeI	YGGCCR	1 cut(s)	843
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
EciI	GGCGGA	1 cut(s)	1527
Eco130I	CCWWGG	7 cut(s)	277, 760, 830, 1298, 1670, 1786, 2121
Eco147I	AGGCCT	2 cut(s)	589, 759
Eco24I	GRGCYC	1 cut(s)	2115
Eco31I	GGTCTC	2 cut(s)	139, 1727
Eco32I	GATATC	2 cut(s)	885, 988
Eco47I	GGWCC	5 cut(s)	979, 1674, 1687, 1730, 2170
Eco47III	AGCGCT	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	1951
EcoO109I	RGGNCCY	3 cut(s)	311, 979, 1037
EcoRV	GATATC	2 cut(s)	885, 988
EcoT14I	CCWWGG	7 cut(s)	277, 760, 830, 1298, 1670, 1786, 2121
EcoT22I	ATGCAT	1 cut(s)	1113
EcoT38I	GRGCYC	1 cut(s)	2115
EgeI	GGCGCC	2 cut(s)	919, 1795
EheI	GGCGCC	2 cut(s)	919, 1795
ErhI	CCWWGG	7 cut(s)	277, 760, 830, 1298, 1670, 1786, 2121
Esp3I	CGTCTC	1 cut(s)	693
FaqI	GGGAC	1 cut(s)	2056
FauI	CCCGC	2 cut(s)	353, 1742
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	2 cut(s)	791, 1593
Fnu4HI	GCNGC	4 cut(s)	5, 257, 1089, 1655
FokI	GGATG	5 cut(s)	31, 187, 1184, 1217, 1422
FriOI	GRGCYC	1 cut(s)	2115
Fsp4HI	GCNGC	4 cut(s)	5, 257, 1089, 1655
FspBI	CTAG	6 cut(s)	626, 639, 728, 825, 942, 1880
FspI	TGCGCA	1 cut(s)	1824
GlaI	GCGC	5 cut(s)	41, 266, 919, 1795, 1824
GluI	GCNGC	4 cut(s)	5, 257, 1089, 1655
GsaI	CCCAGC	2 cut(s)	473, 743
HaeII	RGCGCY	3 cut(s)	43, 921, 1797
HaeIII	GGCC	7 cut(s)	313, 532, 589, 759, 845, 1039, 1331
HapII	CCGG	9 cut(s)	98, 308, 534, 663, 1385, 1805, 1975, 2028, 2168
HgaI	GACGC	1 cut(s)	1695
HhaI	GCGC	5 cut(s)	42, 267, 920, 1796, 1825
Hin1I	GRCGYC	2 cut(s)	918, 1794
Hin6I	GCGC	5 cut(s)	40, 265, 918, 1794, 1823
HinP1I	GCGC	5 cut(s)	40, 265, 918, 1794, 1823
HincII	GTYRAC	4 cut(s)	66, 192, 733, 1864
HindII	GTYRAC	4 cut(s)	66, 192, 733, 1864
HindIII	AAGCTT	1 cut(s)	1514
HinfI	GANTC	9 cut(s)	181, 304, 604, 709, 765, 1145, 1283, 1534, 1852
HpaI	GTTAAC	2 cut(s)	733, 1864
HpaII	CCGG	9 cut(s)	98, 308, 534, 663, 1385, 1805, 1975, 2028, 2168
HphI	GGTGA	5 cut(s)	289, 448, 879, 1031, 1769
Hpy188I	TCNGA	6 cut(s)	113, 236, 497, 1507, 1632, 2177
Hpy188III	TCNNGA	4 cut(s)	391, 969, 2021, 2087
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	6 cut(s)	70, 196, 373, 1576, 1691, 1766
HpyCH4IV	ACGT	1 cut(s)	686
HpyF3I	CTNAG	3 cut(s)	183, 462, 1431
HpySE526I	ACGT	1 cut(s)	686
Hsp92I	GRCGYC	2 cut(s)	918, 1794
HspAI	GCGC	5 cut(s)	40, 265, 918, 1794, 1823
KasI	GGCGCC	2 cut(s)	917, 1793
KpnI	GGTACC	1 cut(s)	1975
Ksp22I	TGATCA	1 cut(s)	339
KspAI	GTTAAC	2 cut(s)	733, 1864
Kzo9I	GATC	3 cut(s)	339, 405, 1012
LguI	GCTCTTC	1 cut(s)	572
Lsp1109I	GCAGC	4 cut(s)	16, 243, 1075, 1641
LweI	GCATC	5 cut(s)	9, 1444, 1693, 1887, 2014
MaeI	CTAG	6 cut(s)	626, 639, 728, 825, 942, 1880
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	5 cut(s)	1284, 1469, 1520, 1766, 2041
MalI	GATC	3 cut(s)	341, 407, 1014
MboI	GATC	3 cut(s)	339, 405, 1012
MfeI	CAATTG	1 cut(s)	1292
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	6 cut(s)	105, 214, 568, 1055, 1604, 2115
MluCI	AATT	7 cut(s)	355, 489, 718, 1104, 1195, 1292, 1740
Mly113I	GGCGCC	2 cut(s)	918, 1794
MlyI	GAGTC	4 cut(s)	175, 598, 1139, 1292
MmeI	TCCRAC	6 cut(s)	214, 686, 838, 1485, 1708, 1910
Mph1103I	ATGCAT	1 cut(s)	1113
MroXI	GAANNNNTTC	1 cut(s)	769
MseI	TTAA	6 cut(s)	318, 402, 732, 1512, 1863, 2082
MslI	CAYNNNNRTG	5 cut(s)	13, 464, 878, 1478, 1892
MspA1I	CMGCKG	2 cut(s)	739, 1661
MspI	CCGG	9 cut(s)	98, 308, 534, 663, 1385, 1805, 1975, 2028, 2168
MspR9I	CCNGG	6 cut(s)	309, 534, 663, 1386, 1805, 2168
MunI	CAATTG	1 cut(s)	1292
MvnI	CGCG	1 cut(s)	265
NarI	GGCGCC	2 cut(s)	918, 1794
NciI	CCSGG	6 cut(s)	309, 534, 663, 1386, 1805, 2168
NcoI	CCATGG	1 cut(s)	830
NdeII	GATC	3 cut(s)	339, 405, 1012
NheI	GCTAGC	1 cut(s)	824
NmeAIII	GCCGAG	1 cut(s)	821
NmuCI	GTSAC	2 cut(s)	1284, 1520
NsbI	TGCGCA	1 cut(s)	1824
NsiI	ATGCAT	1 cut(s)	1113
NspI	RCATGY	5 cut(s)	335, 1115, 1453, 1870, 2133
OliI	CACNNNNGTG	1 cut(s)	464
PceI	AGGCCT	2 cut(s)	589, 759
PciI	ACATGT	2 cut(s)	331, 1449
PciSI	GCTCTTC	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PdmI	GAANNNNTTC	1 cut(s)	769
PfeI	GAWTC	5 cut(s)	304, 709, 765, 1534, 1852
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	4 cut(s)	6, 258, 1090, 1656
PleI	GAGTC	4 cut(s)	175, 598, 1139, 1291
PluTI	GGCGCC	2 cut(s)	921, 1797
PpsI	GAGTC	4 cut(s)	175, 598, 1139, 1291
PpuMI	RGGWCCY	1 cut(s)	979
PscI	ACATGT	2 cut(s)	331, 1449
PshBI	ATTAAT	1 cut(s)	2082
Psp5II	RGGWCCY	1 cut(s)	979
PspFI	CCCAGC	2 cut(s)	469, 739
PspPI	GGNCC	8 cut(s)	311, 531, 979, 1037, 1674, 1687, 1730, 2170
PspPPI	RGGWCCY	1 cut(s)	979
PstI	CTGCAG	1 cut(s)	2070
PstNI	CAGNNNCTG	2 cut(s)	10, 469
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	6 cut(s)	176, 283, 610, 814, 1973, 1997
RsaNI	GTAC	6 cut(s)	175, 282, 609, 813, 1972, 1996
RseI	CAYNNNNRTG	5 cut(s)	13, 464, 878, 1478, 1892
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	6 cut(s)	318, 402, 732, 1512, 1863, 2082
SatI	GCNGC	4 cut(s)	5, 257, 1089, 1655
Sau3AI	GATC	3 cut(s)	339, 405, 1012
Sau96I	GGNCC	8 cut(s)	311, 531, 979, 1037, 1674, 1687, 1730, 2170
SchI	GAGTC	4 cut(s)	175, 598, 1139, 1292
ScrFI	CCNGG	6 cut(s)	309, 534, 663, 1386, 1805, 2168
SduI	GDGCHC	6 cut(s)	105, 214, 568, 1055, 1604, 2115
SfaNI	GCATC	5 cut(s)	9, 1444, 1693, 1887, 2014
SfcI	CTRYAG	2 cut(s)	1440, 2066
SfoI	GGCGCC	2 cut(s)	919, 1795
SinI	GGWCC	5 cut(s)	979, 1674, 1687, 1730, 2170
SmiMI	CAYNNNNRTG	5 cut(s)	13, 464, 878, 1478, 1892
Sse9I	AATT	7 cut(s)	355, 489, 718, 1104, 1195, 1292, 1740
SseBI	AGGCCT	2 cut(s)	589, 759
SsiI	CCGC	5 cut(s)	360, 1538, 1661, 1735, 2139
SspDI	GGCGCC	2 cut(s)	917, 1793
SspI	AATATT	4 cut(s)	936, 1246, 1396, 2049
SspMI	CTAG	6 cut(s)	626, 639, 728, 825, 942, 1880
StuI	AGGCCT	2 cut(s)	589, 759
StyD4I	CCNGG	6 cut(s)	307, 532, 661, 1384, 1803, 2166
StyI	CCWWGG	7 cut(s)	277, 760, 830, 1298, 1670, 1786, 2121
TaaI	ACNGT	6 cut(s)	70, 196, 373, 1576, 1691, 1766
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	3 cut(s)	712, 984, 2088
TasI	AATT	7 cut(s)	355, 489, 718, 1104, 1195, 1292, 1740
TatI	WGTACW	1 cut(s)	1995
TfiI	GAWTC	5 cut(s)	304, 709, 765, 1534, 1852
Tru1I	TTAA	6 cut(s)	318, 402, 732, 1512, 1863, 2082
Tru9I	TTAA	6 cut(s)	318, 402, 732, 1512, 1863, 2082
TscAI	CASTG	8 cut(s)	15, 75, 214, 568, 1590, 1604, 1832, 1915
TseFI	GTSAC	2 cut(s)	1284, 1520
TseI	GCWGC	4 cut(s)	4, 256, 1088, 1654
Tsp45I	GTSAC	2 cut(s)	1284, 1520
TspRI	CASTG	8 cut(s)	15, 75, 214, 568, 1590, 1604, 1832, 1915
Tth111I	GACNNNGTC	1 cut(s)	196
VneI	GTGCAC	2 cut(s)	210, 1600
VpaK11BI	GGWCC	5 cut(s)	979, 1674, 1687, 1730, 2170
VspI	ATTAAT	1 cut(s)	2082
XapI	RAATTY	2 cut(s)	489, 1740
XceI	RCATGY	5 cut(s)	335, 1115, 1453, 1870, 2133
XcmI	CCANNNNNNNNNTGG	4 cut(s)	466, 522, 743, 1375
XmiI	GTMKAC	2 cut(s)	791, 1593
XmnI	GAANNNNTTC	1 cut(s)	769
XspI	CTAG	6 cut(s)	626, 639, 728, 825, 942, 1880
Zsp2I	ATGCAT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.