Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8336279.1

Orthogroup ID

OG0002980

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 992

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8336279.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

gggtttattcgtgcttctgtgacccaagagcataatgcaacacagatgaagcccacaactccatttttggagataaaattaccagtgccaacagtggtaagtaaagagaaacaggctccactactagccactacatcacattcttctgtttctgattatcaaagaggtggagaggaggaagaggatgaagatgaagatgattgggatgcttttcagtcttttcctgctactacaaatgcagctgaaattgactcgagagtagacagtgccttggaaacacccgacctggttgagaaattgtctccttcggaagtgaatacagagagtgatcaatttcatggaaattctgtttcccaacctctcaacaatgtagatgctaccagcaaagcagaccatcaagaggctggcgaagctgaggtgatatctgattccctggatgatctgagatcctcacagggtaatatacta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.96

Weight (kDa)

4.16

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67140 AT1G67140 AT1G67140
fragaria_vesca	FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230
malus_domestica	MD12G1002400.v1.1 MD14G1001900.v1.1
prunus_persica	Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1
pyrus_communis	pycom12g00210 pycom49g00150 pycom49g00160
rosa_chinensis	RchiOBHm_Chr2g0162941 RchiOBHm_Chr2g0166391
rosa_laevigata	RLG00000021363
rosa_multiflora	Rmu_co8336279.1_g000001 Rmu_co8361777.1_g000001 Rmu_co8457597.1_g000001 Rmu_sc0000587.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087690
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565500 Rh2AG588800 Rh2BG578200 Rh2CG547900 Rh2DG588400 Rh2DG611100
rosa_wichuraiana	Rw2G046810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	400
AjnI	CCWGG	2 cut(s)	285, 432
AluBI	AGCT	2 cut(s)	242, 413
AluI	AGCT	2 cut(s)	242, 413
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	253
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	287, 434
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	287, 434
BmeT110I	CYCGRG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	287, 434
BmsI	GCATC	2 cut(s)	196, 364
Bpu10I	CCTNAGC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	270, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	287, 434
BseDI	CCNNGG	2 cut(s)	270, 432
BseGI	GGATG	3 cut(s)	190, 211, 442
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	405, 434
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	306
BsoBI	CYCGRG	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	328, 439, 446
BspCNI	CTCAG	2 cut(s)	406, 435
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	270, 432
BssMI	GATC	3 cut(s)	328, 439, 446
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	287, 434
Bst4CI	ACNGT	2 cut(s)	94, 266
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	414, 443
BstF5I	GGATG	3 cut(s)	190, 211, 442
BstKTI	GATC	3 cut(s)	331, 442, 449
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	3 cut(s)	328, 439, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	2 cut(s)	287, 434
BstSCI	CCNGG	2 cut(s)	285, 432
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BtsCI	GGATG	3 cut(s)	190, 211, 442
BtsIMutI	CAGTG	3 cut(s)	90, 99, 271
Cac8I	GCNNGC	1 cut(s)	406
CsiI	ACCWGGT	1 cut(s)	285
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	6 cut(s)	52, 116, 128, 242, 404, 413
CviKI_1	RGCY	6 cut(s)	52, 116, 128, 242, 404, 413
DdeI	CTNAG	2 cut(s)	414, 443
DpnI	GATC	3 cut(s)	330, 441, 448
DpnII	GATC	3 cut(s)	328, 439, 446
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	285, 432
EcoRV	GATATC	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	341
FaiI	YATR	3 cut(s)	33, 339, 464
FatI	CATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	3 cut(s)	197, 218, 449
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	341
HinfI	GANTC	2 cut(s)	251, 428
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	4 cut(s)	154, 310, 427, 444
Hpy188III	TCNNGA	2 cut(s)	255, 398
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	2 cut(s)	94, 266
HpyCH4V	TGCA	2 cut(s)	38, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	414, 443
Hsp92II	CATG	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	328, 439, 446
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	2 cut(s)	196, 364
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	3 cut(s)	330, 441, 448
MboI	GATC	3 cut(s)	328, 439, 446
MboII	GAAGA	4 cut(s)	135, 191, 200, 206
MflI	RGATCY	1 cut(s)	446
MluCI	AATT	5 cut(s)	77, 246, 296, 332, 343
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	8 cut(s)	158, 166, 169, 175, 369, 394, 409, 460
MspA1I	CMGCKG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	287, 434
MvaI	CCWGG	2 cut(s)	287, 434
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	3 cut(s)	328, 439, 446
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	19
PaeR7I	CTCGAG	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	285, 432
PspGI	CCWGG	2 cut(s)	285, 432
PspN4I	GGNNCC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	242
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	3 cut(s)	328, 439, 446
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	287, 434
SetI	ASST	6 cut(s)	169, 244, 288, 361, 415, 420
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	196, 364
Sfr274I	CTCGAG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	5 cut(s)	77, 246, 296, 332, 343
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	285, 432
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	94, 266
TaqI	TCGA	1 cut(s)	254
TasI	AATT	5 cut(s)	77, 246, 296, 332, 343
TfiI	GAWTC	1 cut(s)	428
TscAI	CASTG	3 cut(s)	90, 99, 271
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	62, 201, 207, 326
TspRI	CASTG	3 cut(s)	90, 99, 271
XapI	RAATTY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.