Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457597.1

Orthogroup ID

OG0002980

Physical Location & Seq

Genomic Coordinates Reverse (-)

88 .. 1764

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457597.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ctgctaagcattagccaacaccccaagttcacttcgttcgagaggactcctgacccggagcttccagggcacctcctgctggaacaatatcaggcgcagctagtgtctgctgtccgcactgccttagactcgtcctctggtcctattcttttggaagcaggcttccagttggctacaaagatattcacaagtggaataattaagggtgatcagattgctgttaagcgcatatattctttgatttcgcgaccattgaatgacttcaaggacctgtattatccttcatttgcagaatgggtctcgtgcaagattaagataagacttcttgctgcccatgcttctctcaaatgttatacatatgcattcttgaggagacaccaaagtgcggttccagatgaatatttagcacttttaccattattttcaaagagttcaaacatgcttgggaagtactggattagagtcttgaaggactacagctatatttgcttgtgcgtgcatcttaaggcaaagtggaatccttttcttgatggaattcaatcacctctggtatcatcaaagttggagccctgcttggaagaatcatggccagtaatattgcaggcaattgcattggatgcagttccagtgaatcttgaagagaatgaatcttcaaaatccactgatgaaactacatcaagtaatagcttattgtctggatatagtatggttcaattggaatccgaagattatcagtttctctggggatttgctttgctagttttatttcaggggcaaaattcgacccccagtggattgaaaaatccagtttcttttgttaaagcttataacagggttgatccatccagtgaagaattatcttccccaggagttaatttatacgagattgtattaccggtcttccagtttttgtccaccaaaagatttgccagtgcaggatttctcactatggacatatgcagtgaattgcttcaggtggcaatccatatttcttcctcttgttcttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

37.5

Weight (kDa)

5.91

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67140 AT1G67140 AT1G67140
fragaria_vesca	FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230
malus_domestica	MD12G1002400.v1.1 MD14G1001900.v1.1
prunus_persica	Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1
pyrus_communis	pycom12g00210 pycom49g00150 pycom49g00160
rosa_chinensis	RchiOBHm_Chr2g0162941 RchiOBHm_Chr2g0166391
rosa_laevigata	RLG00000021363
rosa_multiflora	Rmu_co8336279.1_g000001 Rmu_co8361777.1_g000001 Rmu_co8457597.1_g000001 Rmu_sc0000587.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087690
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565500 Rh2AG588800 Rh2BG578200 Rh2CG547900 Rh2DG588400 Rh2DG611100
rosa_wichuraiana	Rw2G046810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AccB1I	GGYRCC	1 cut(s)	69
AccII	CGCG	1 cut(s)	247
AciI	CCGC	2 cut(s)	115, 386
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	1 cut(s)	587
AcsI	RAATTY	2 cut(s)	534, 778
AcuI	CTGAAG	1 cut(s)	956
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	79, 385
AflII	CTTAAG	1 cut(s)	503
AgeI	ACCGGT	1 cut(s)	895
AjnI	CCWGG	2 cut(s)	64, 865
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	5 cut(s)	61, 100, 480, 687, 824
AluI	AGCT	5 cut(s)	61, 100, 480, 687, 824
Alw26I	GTCTC	2 cut(s)	304, 367
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	1 cut(s)	587
ApeKI	GCWGC	2 cut(s)	97, 329
ApoI	RAATTY	2 cut(s)	534, 778
AsiGI	ACCGGT	1 cut(s)	895
Asp700I	GAANNNNTTC	2 cut(s)	260, 969
AspLEI	GCGC	2 cut(s)	97, 228
AspS9I	GGNCC	2 cut(s)	140, 268
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	218, 534
AvaII	GGWCC	2 cut(s)	140, 268
BaeGI	GKGCMC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	570
BauI	CACGAG	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	892
BbvI	GCAGC	2 cut(s)	109, 316
BccI	CCATC	2 cut(s)	524, 850
BciT130I	CCWGG	2 cut(s)	66, 867
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	304, 367
BfaI	CTAG	2 cut(s)	101, 758
BfmI	CTRYAG	1 cut(s)	475
BfrI	CTTAAG	1 cut(s)	503
BisI	GCNGC	2 cut(s)	98, 330
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	99, 331
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	3 cut(s)	56, 66, 867
Bme18I	GGWCC	2 cut(s)	140, 268
BmgT120I	GGNCC	2 cut(s)	140, 268
BmiI	GGNNCC	3 cut(s)	71, 390, 567
BmrFI	CCNGG	3 cut(s)	56, 66, 867
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	2 cut(s)	508, 607
BmuI	ACTGGG	1 cut(s)	783
BpiI	GAAGAC	1 cut(s)	892
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	65, 865
BsaWI	WCCGGW	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 385
Bse118I	RCCGGY	1 cut(s)	895
Bse1I	ACTGG	9 cut(s)	166, 458, 590, 626, 789, 806, 846, 904, 930
BseBI	CCWGG	2 cut(s)	66, 867
BseDI	CCNNGG	2 cut(s)	65, 865
BseGI	GGATG	2 cut(s)	622, 842
BseLI	CCNNNNNNNGG	2 cut(s)	79, 385
BseNI	ACTGG	9 cut(s)	166, 458, 590, 626, 789, 806, 846, 904, 930
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	109, 316
BsgI	GTGCAG	1 cut(s)	954
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	589
BshNI	GGYRCC	1 cut(s)	69
BshTI	ACCGGT	1 cut(s)	895
BsiSI	CCGG	2 cut(s)	56, 896
BslI	CCNNNNNNNGG	2 cut(s)	79, 385
BsmAI	GTCTC	2 cut(s)	304, 367
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	589
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	72, 570
Bsp143I	GATC	2 cut(s)	208, 838
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp68I	TCGCGA	1 cut(s)	247
BspACI	CCGC	2 cut(s)	115, 386
BspANI	GGCC	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	3 cut(s)	71, 390, 567
BspPI	GGATC	1 cut(s)	833
BspT107I	GGYRCC	1 cut(s)	69
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	895
BsrI	ACTGG	9 cut(s)	166, 458, 590, 626, 789, 806, 846, 904, 930
BssAI	RCCGGY	1 cut(s)	895
BssECI	CCNNGG	2 cut(s)	65, 865
BssMI	GATC	2 cut(s)	208, 838
BssSI	CACGAG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	66, 867
Bst6I	CTCTTC	1 cut(s)	633
BstAFI	CTTAAG	1 cut(s)	503
BstAPI	GCANNNNNTGC	2 cut(s)	76, 617
BstC8I	GCNNGC	3 cut(s)	160, 497, 603
BstDEI	CTNAG	2 cut(s)	5, 124
BstF5I	GGATG	2 cut(s)	622, 842
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	2 cut(s)	97, 228
BstKTI	GATC	2 cut(s)	211, 841
BstMAI	GTCTC	2 cut(s)	304, 367
BstMBI	GATC	2 cut(s)	208, 838
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 76, 335, 486, 617
BstNI	CCWGG	2 cut(s)	66, 867
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	3 cut(s)	54, 64, 865
BstSFI	CTRYAG	1 cut(s)	475
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	109, 316
BstV2I	GAAGAC	1 cut(s)	892
BsuRI	GGCC	1 cut(s)	589
BtsCI	GGATG	2 cut(s)	622, 842
BtsI	GCAGTG	2 cut(s)	117, 967
BtsIMutI	CAGTG	7 cut(s)	117, 633, 660, 796, 853, 937, 967
BtuMI	TCGCGA	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	160, 497, 603
CfoI	GCGC	2 cut(s)	97, 228
Cfr10I	RCCGGY	1 cut(s)	895
Cfr13I	GGNCC	2 cut(s)	140, 268
Csp6I	GTAC	1 cut(s)	451
CspAI	ACCGGT	1 cut(s)	895
CviAII	CATG	3 cut(s)	335, 439, 585
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	5, 124
DpnI	GATC	2 cut(s)	210, 840
DpnII	GATC	2 cut(s)	208, 838
EaeI	YGGCCR	1 cut(s)	587
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	140, 268
Eco57I	CTGAAG	1 cut(s)	956
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	64, 865
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	570
FaeI	CATG	3 cut(s)	338, 442, 588
FatI	CATG	3 cut(s)	334, 438, 584
FauNDI	CATATG	2 cut(s)	358, 956
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	98, 330
FokI	GGATG	2 cut(s)	629, 829
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	2 cut(s)	98, 330
FspBI	CTAG	2 cut(s)	101, 758
GlaI	GCGC	2 cut(s)	96, 227
GluI	GCNGC	2 cut(s)	98, 330
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	2 cut(s)	56, 896
HhaI	GCGC	2 cut(s)	97, 228
Hin1II	CATG	3 cut(s)	338, 442, 588
Hin6I	GCGC	2 cut(s)	95, 226
HinP1I	GCGC	2 cut(s)	95, 226
HindIII	AAGCTT	1 cut(s)	822
HinfI	GANTC	8 cut(s)	46, 128, 462, 517, 581, 631, 647, 719
HpaII	CCGG	2 cut(s)	56, 896
HphI	GGTGA	2 cut(s)	218, 534
Hpy166II	GTNNAC	2 cut(s)	30, 915
Hpy188I	TCNGA	2 cut(s)	213, 724
Hpy188III	TCNNGA	9 cut(s)	40, 50, 246, 367, 392, 466, 527, 635, 696
Hpy8I	GTNNAC	2 cut(s)	30, 915
HpyAV	CCTTC	2 cut(s)	291, 463
HpyCH4V	TGCA	9 cut(s)	290, 306, 362, 499, 601, 611, 620, 935, 960
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 76, 335, 486, 617
HpyF3I	CTNAG	2 cut(s)	5, 124
Hsp92II	CATG	3 cut(s)	338, 442, 588
HspAI	GCGC	2 cut(s)	95, 226
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	208, 838
LmnI	GCTCC	2 cut(s)	58, 565
Lsp1109I	GCAGC	2 cut(s)	109, 316
LweI	GCATC	2 cut(s)	508, 607
MaeI	CTAG	2 cut(s)	101, 758
MalI	GATC	2 cut(s)	210, 840
MboI	GATC	2 cut(s)	208, 838
MboII	GAAGA	8 cut(s)	590, 642, 650, 737, 852, 863, 892, 984
MfeI	CAATTG	2 cut(s)	606, 713
MhlI	GDGCHC	2 cut(s)	72, 570
MlsI	TGGCCA	1 cut(s)	589
MluCI	AATT	8 cut(s)	198, 534, 606, 713, 778, 854, 874, 965
MluNI	TGGCCA	1 cut(s)	589
MlyI	GAGTC	3 cut(s)	40, 122, 471
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	6 cut(s)	36, 83, 145, 363, 555, 1006
Mox20I	TGGCCA	1 cut(s)	589
Mph1103I	ATGCAT	1 cut(s)	364
MroXI	GAANNNNTTC	2 cut(s)	260, 969
MscI	TGGCCA	1 cut(s)	589
MseI	TTAA	7 cut(s)	201, 222, 312, 504, 819, 873, 1009
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	589
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	2 cut(s)	56, 896
MspR9I	CCNGG	3 cut(s)	56, 66, 867
MunI	CAATTG	2 cut(s)	606, 713
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	66, 867
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	5 cut(s)	67, 76, 335, 486, 617
NciI	CCSGG	1 cut(s)	56
NdeI	CATATG	2 cut(s)	358, 956
NdeII	GATC	2 cut(s)	208, 838
NlaIII	CATG	3 cut(s)	338, 442, 588
NlaIV	GGNNCC	3 cut(s)	71, 390, 567
NruI	TCGCGA	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	1 cut(s)	442
OliI	CACNNNNGTG	1 cut(s)	381
PctI	GAATGC	1 cut(s)	362
PdmI	GAANNNNTTC	2 cut(s)	260, 969
PfeI	GAWTC	5 cut(s)	517, 581, 631, 647, 719
PinAI	ACCGGT	1 cut(s)	895
PkrI	GCNGC	2 cut(s)	99, 331
PleI	GAGTC	3 cut(s)	40, 122, 470
PpsI	GAGTC	3 cut(s)	40, 122, 470
PpuMI	RGGWCCY	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	828
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	64, 865
PspGI	CCWGG	2 cut(s)	64, 865
PspN4I	GGNNCC	3 cut(s)	71, 390, 567
PspPI	GGNCC	2 cut(s)	140, 268
PspPPI	RGGWCCY	1 cut(s)	268
RruI	TCGCGA	1 cut(s)	247
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	7 cut(s)	201, 222, 312, 504, 819, 873, 1009
SatI	GCNGC	2 cut(s)	98, 330
Sau3AI	GATC	2 cut(s)	208, 838
Sau96I	GGNCC	2 cut(s)	140, 268
ScaI	AGTACT	1 cut(s)	452
SchI	GAGTC	3 cut(s)	40, 122, 471
ScrFI	CCNGG	3 cut(s)	56, 66, 867
SduI	GDGCHC	2 cut(s)	72, 570
SetI	ASST	9 cut(s)	63, 75, 102, 273, 482, 547, 689, 826, 978
SfaNI	GCATC	2 cut(s)	508, 607
SfcI	CTRYAG	1 cut(s)	475
SinI	GGWCC	2 cut(s)	140, 268
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	367, 503
SmoI	CTYRAG	2 cut(s)	367, 503
Sse9I	AATT	8 cut(s)	198, 534, 606, 713, 778, 854, 874, 965
SsiI	CCGC	2 cut(s)	115, 386
SspI	AATATT	2 cut(s)	401, 597
SspMI	CTAG	2 cut(s)	101, 758
StyD4I	CCNGG	3 cut(s)	54, 64, 865
TaqI	TCGA	2 cut(s)	39, 782
TasI	AATT	8 cut(s)	198, 534, 606, 713, 778, 854, 874, 965
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	5 cut(s)	517, 581, 631, 647, 719
Tru1I	TTAA	7 cut(s)	201, 222, 312, 504, 819, 873, 1009
Tru9I	TTAA	7 cut(s)	201, 222, 312, 504, 819, 873, 1009
TscAI	CASTG	7 cut(s)	124, 633, 667, 796, 853, 937, 967
TseI	GCWGC	2 cut(s)	97, 329
TspDTI	ATGAA	4 cut(s)	273, 411, 660, 681
TspRI	CASTG	7 cut(s)	124, 633, 667, 796, 853, 937, 967
Vha464I	CTTAAG	1 cut(s)	503
VpaK11BI	GGWCC	2 cut(s)	140, 268
XapI	RAATTY	2 cut(s)	534, 778
XceI	RCATGY	1 cut(s)	442
XmnI	GAANNNNTTC	2 cut(s)	260, 969
XspI	CTAG	2 cut(s)	101, 758
ZrmI	AGTACT	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.