Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002980

Physical Location & Seq

Genomic Coordinates Reverse (-)

84358988 .. 84369408

Gene Structure 10421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG611100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCAGAATATATTAAAGAAACCTAAGAAGGAAGTCAATAAATTTAGGAGCACTGCTGTAAGACTTGTTTCTCATCCTGCTCAAGTTCCTTCCTCAGCAGTTTACTTTAAGGATGTGTCGCTGTCTATGCCTCTCACTCACCGACAGCAATTTCAGGGGTTTATTCGTGTTTCTGTGACTCAAGAGCATAAAGCAACCAAGATGAAGCCCACAACTCCATTTTTGGAGATAAAATTACCGGTGCCAACTGTCTACCGAATTGAAGATAATGCTGGTTCTGTATCTAAGGGTGTTGAAATTGATGGTGGTGTGGAAGTTGTGGATGGTTTTGAAGAGAATAAAGAAGAGGACAAACAACCAAATGTGTCAGGGGCATTGCAATCGGGCAGTGGGATATATGACATTGATGGAATACAGCAAGTGCATTCCACCTTGAAAGAAGCAAACAACATCAATGCGTGTATAGAGGAATTAAAAAGGATACAGCTACATAAGATCCACGAAATTGAATTTCTCCAGAAGAGAGCTAAATTGAAGGATGATTACCTGAAGGCTTGTAAAATCGTGCATGAGCGAGGGTGGAACAAATTTTTACTTTCTAAAATGAAGAGAATTGAAGTTCTTGCCAATGAGACTGAGGAAGCTCGGATTCAAATGGAGCGCGATTATTGCATTGGGTCAACAATTCGAGACAACTTTTCTTTCCAGATGGAGCTAGAGGTATATGTGTTTTTGACATTTGTTTTATCTGTAGCTAGCCTTTCCTTACGATATCAAAATGCTGTGCAAGTGTTAGCGCTGAGTCGATTGAGCAGAGCTATGTTTCTTTTACTTTCAACTTTTCATCGAGCCTCACAATTATTAGAGATGAGGTTCTGGCAAGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

34.0

Weight (kDa)

9.07

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67140 AT1G67140 AT1G67140
fragaria_vesca	FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230 FvH4_6g45230
malus_domestica	MD12G1002400.v1.1 MD14G1001900.v1.1
prunus_persica	Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1 Prupe.7G002300_v2.0.a1
pyrus_communis	pycom12g00210 pycom49g00150 pycom49g00160
rosa_chinensis	RchiOBHm_Chr2g0162941 RchiOBHm_Chr2g0166391
rosa_laevigata	RLG00000021363
rosa_multiflora	Rmu_co8336279.1_g000001 Rmu_co8361777.1_g000001 Rmu_co8457597.1_g000001 Rmu_sc0000587.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087690
rosa_rugosa	Rorug02G0499400
rosa_samantha	Rh2AG565500 Rh2AG588800 Rh2BG578200 Rh2CG547900 Rh2DG588400 Rh2DG611100
rosa_wichuraiana	Rw2G046810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	663
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	3 cut(s)	41, 509, 587
AcuI	CTGAAG	1 cut(s)	569
AfeI	AGCGCT	1 cut(s)	798
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	9 cut(s)	263, 296, 332, 436, 509, 535, 617, 653, 837
AluBI	AGCT	6 cut(s)	487, 527, 644, 715, 755, 818
AluI	AGCT	6 cut(s)	487, 527, 644, 715, 755, 818
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	626, 684
AlwI	GGATC	1 cut(s)	490
Aor51HI	AGCGCT	1 cut(s)	798
ApoI	RAATTY	3 cut(s)	41, 509, 587
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	2 cut(s)	663, 799
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	755
BanI	GGYRCC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	94
BccI	CCATC	4 cut(s)	296, 317, 401, 703
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciVI	GTATCC	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	626, 684
BfaI	CTAG	2 cut(s)	716, 756
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	800
BfuI	GTATCC	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	243
BmtI	GCTAGC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	94
BpuEI	CTTGAG	2 cut(s)	66, 165
BsaWI	WCCGGW	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	374
BseGI	GGATG	4 cut(s)	73, 118, 328, 544
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	3 cut(s)	108, 627, 791
Bsh1236I	CGCG	1 cut(s)	663
BshNI	GGYRCC	1 cut(s)	241
BshTI	ACCGGT	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	626, 684
BsmI	GAATGC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	495
BspCNI	CTCAG	3 cut(s)	107, 628, 792
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssMI	GATC	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	4 cut(s)	327, 339, 515, 602
BstC8I	GCNNGC	1 cut(s)	757
BstDEI	CTNAG	5 cut(s)	24, 94, 285, 636, 800
BstF5I	GGATG	4 cut(s)	73, 118, 328, 544
BstFNI	CGCG	1 cut(s)	663
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	2 cut(s)	663, 799
BstKTI	GATC	1 cut(s)	498
BstMAI	GTCTC	2 cut(s)	626, 684
BstMBI	GATC	1 cut(s)	495
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 669
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	474
BtsCI	GGATG	4 cut(s)	73, 118, 328, 544
BtsI	GCAGTG	2 cut(s)	51, 394
BtsIMutI	CAGTG	2 cut(s)	51, 394
Cac8I	GCNNGC	1 cut(s)	757
CfoI	GCGC	2 cut(s)	663, 799
Cfr10I	RCCGGY	1 cut(s)	238
CspAI	ACCGGT	1 cut(s)	238
CviAII	CATG	1 cut(s)	569
DdeI	CTNAG	5 cut(s)	24, 94, 285, 636, 800
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
Eam1104I	CTCTTC	4 cut(s)	327, 339, 515, 602
EarI	CTCTTC	4 cut(s)	327, 339, 515, 602
Eco32I	GATATC	1 cut(s)	773
Eco47III	AGCGCT	1 cut(s)	798
Eco57I	CTGAAG	1 cut(s)	569
EcoRV	GATATC	1 cut(s)	773
FaeI	CATG	1 cut(s)	572
FatI	CATG	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	4 cut(s)	60, 125, 335, 551
FspBI	CTAG	2 cut(s)	716, 756
GlaI	GCGC	2 cut(s)	662, 798
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	800
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	2 cut(s)	663, 799
Hin1II	CATG	1 cut(s)	572
Hin6I	GCGC	2 cut(s)	661, 797
HinP1I	GCGC	2 cut(s)	661, 797
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	3 cut(s)	178, 649, 802
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	3 cut(s)	103, 253, 681
Hpy188I	TCNGA	1 cut(s)	648
Hpy188III	TCNNGA	4 cut(s)	182, 517, 689, 706
Hpy8I	GTNNAC	3 cut(s)	103, 253, 681
HpyAV	CCTTC	4 cut(s)	22, 99, 529, 544
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	6 cut(s)	4, 379, 424, 568, 672, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 669
HpyF3I	CTNAG	5 cut(s)	24, 94, 285, 636, 800
Hsp92II	CATG	1 cut(s)	572
HspAI	GCGC	2 cut(s)	661, 797
Kzo9I	GATC	1 cut(s)	495
LmnI	GCTCC	3 cut(s)	48, 658, 712
LpnPI	CCDG	9 cut(s)	90, 140, 252, 258, 354, 530, 560, 719, 862
MaeI	CTAG	2 cut(s)	716, 756
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	497
MboI	GATC	1 cut(s)	495
MboII	GAAGA	5 cut(s)	275, 344, 356, 532, 619
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	172, 811
MnlI	CCTC	9 cut(s)	103, 141, 340, 460, 569, 631, 712, 862, 864
MseI	TTAA	3 cut(s)	14, 108, 473
MspI	CCGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	424
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	2 cut(s)	127, 669
NdeII	GATC	1 cut(s)	495
NheI	GCTAGC	1 cut(s)	755
NlaIII	CATG	1 cut(s)	572
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	649
PinAI	ACCGGT	1 cut(s)	238
PleI	GAGTC	2 cut(s)	172, 810
PpsI	GAGTC	2 cut(s)	172, 810
PspN4I	GGNNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	14, 108, 473
Sau3AI	GATC	1 cut(s)	495
SchI	GAGTC	2 cut(s)	172, 811
SduI	GDGCHC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	81, 180
SmoI	CTYRAG	2 cut(s)	81, 180
SspMI	CTAG	2 cut(s)	716, 756
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	3 cut(s)	688, 805, 847
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	3 cut(s)	14, 108, 473
Tru9I	TTAA	3 cut(s)	14, 108, 473
TscAI	CASTG	2 cut(s)	58, 394
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	218, 620, 833
TspRI	CASTG	2 cut(s)	58, 394
XapI	RAATTY	3 cut(s)	41, 509, 587
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	716, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.