Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341649.1

Orthogroup ID

OG0004264

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1010

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

ttcattgtggtcgtagcacattggatcaattgtgtcgactactcaatatcagtttctgccctccaacggaggaagatattccagaagggaagagcttggttgttgtggcgtataatcctcttggatggaatcgcactgagattgttaggatacctgttaattatgatgatcttgttgttcaagattcctccggaaacatcctcgagacacaatatgtgagtgtggataatgttacaagcaatctaagaacattttatacagaagcctacttgggacagtcatcaaaacaaattcccaagtactggctaatctttcaagcctctgtgtcaccacttggttgggacacatacttcatctctagaggagctaccaaagggaaaagaagagttggacttctctctgttaaggatagtccacagaatgagaccattgaaattggaccaggagatctgaagatgtccttttcttctgcttctggacaactcaagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0015923 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

163

Amino Acids

18.19

Weight (kDa)

6.79

Isoelectric Point (pI)

64.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66150 AT5G66150 AT5G66150
fragaria_vesca	FvH4_1g11550 FvH4_1g11600 FvH4_1g11600 FvH4_1g11600
malus_domestica	MD02G1128700.v1.1 MD02G1129000.v1.1
prunus_persica	Prupe.7G170500_v2.0.a1 Prupe.7G170500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0099191 RchiOBHm_Chr2g0099201
rosa_laevigata	RLG00000016854 RLG00000016860
rosa_multiflora	Rmu_co8341649.1_g000001 Rmu_sc0002025.1_g000008 Rmu_sc0010993.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143340 Rroxscaffold_2G00143370
rosa_rugosa	Rorug02G0077600 Rorug02G0078100 Rorug02G0078100
rosa_samantha	Rh2AG126500 Rh2AG126900 Rh2BG129700 Rh2BG129900 Rh2CG130700 Rh2CG131100 Rh2DG131100 Rh2DG131500
rosa_wichuraiana	Rw2G009780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	190
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	66, 302
AgsI	TTSAA	3 cut(s)	181, 316, 433
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	2 cut(s)	95, 367
AluI	AGCT	2 cut(s)	95, 367
Alw26I	GTCTC	2 cut(s)	199, 418
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	439
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	443
BciVI	GTATCC	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	199, 418
BfaI	CTAG	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	447
BmcAI	AGTACT	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 302
Bse1I	ACTGG	1 cut(s)	307
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	130, 197
BseLI	CCNNNNNNNGG	2 cut(s)	66, 302
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	287, 355
BslI	CCNNNNNNNGG	2 cut(s)	66, 302
BsmAI	GTCTC	2 cut(s)	199, 418
BsmFI	GGGAC	2 cut(s)	287, 355
Bso31I	GGTCTC	1 cut(s)	418
BsoBI	CYCGRG	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	24, 168, 447
BspCNI	CTCAG	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	190
BspPI	GGATC	1 cut(s)	32
BspQI	GCTCTTC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	307
BssMI	GATC	3 cut(s)	24, 168, 447
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	85, 378
BstDEI	CTNAG	2 cut(s)	137, 244
BstF5I	GGATG	2 cut(s)	130, 197
BstKTI	GATC	3 cut(s)	27, 171, 450
BstMAI	GTCTC	2 cut(s)	199, 418
BstMBI	GATC	3 cut(s)	24, 168, 447
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	447
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	130, 197
BtsIMutI	CAGTG	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	300
CviJI	RGCY	5 cut(s)	95, 265, 306, 319, 367
CviKI_1	RGCY	5 cut(s)	95, 265, 306, 319, 367
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	137, 244
DpnI	GATC	3 cut(s)	26, 170, 449
DpnII	GATC	3 cut(s)	24, 168, 447
Eam1104I	CTCTTC	2 cut(s)	85, 378
EarI	CTCTTC	2 cut(s)	85, 378
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	441
FaiI	YATR	5 cut(s)	113, 164, 215, 257, 348
FalI	AAGNNNNNCTT	2 cut(s)	445, 477
FaqI	GGGAC	2 cut(s)	287, 355
FblI	GTMKAC	1 cut(s)	36
FokI	GGATG	2 cut(s)	137, 184
FspBI	CTAG	1 cut(s)	359
HapII	CCGG	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	129, 184
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	37, 415
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	6 cut(s)	82, 181, 191, 204, 359, 476
Hpy8I	GTNNAC	2 cut(s)	37, 415
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	137, 244
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	24, 168, 447
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	7 cut(s)	95, 167, 204, 288, 428, 455, 461
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	231, 326
MalI	GATC	3 cut(s)	26, 170, 449
MboI	GATC	3 cut(s)	24, 168, 447
MboII	GAAGA	5 cut(s)	85, 102, 395, 458, 465
MfeI	CAATTG	1 cut(s)	28
MflI	RGATCY	1 cut(s)	447
MluCI	AATT	4 cut(s)	28, 159, 290, 434
MmeI	TCCRAC	2 cut(s)	88, 369
MnlI	CCTC	7 cut(s)	63, 71, 128, 198, 211, 330, 355
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	158, 404
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	443
NdeII	GATC	3 cut(s)	24, 168, 447
NmuCI	GTSAC	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	129, 184
PflMI	CCANNNNNTGG	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	439
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	447
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	158, 404
Sau3AI	GATC	3 cut(s)	24, 168, 447
Sau96I	GGNCC	1 cut(s)	439
ScaI	AGTACT	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	443
SetI	ASST	3 cut(s)	97, 156, 369
Sfr274I	CTCGAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	439
SlaI	CTCGAG	1 cut(s)	202
SmlI	CTYRAG	2 cut(s)	202, 484
SmoI	CTYRAG	2 cut(s)	202, 484
Sse9I	AATT	4 cut(s)	28, 159, 290, 434
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	36, 203
TasI	AATT	4 cut(s)	28, 159, 290, 434
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	129, 184
Tru1I	TTAA	2 cut(s)	158, 404
Tru9I	TTAA	2 cut(s)	158, 404
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	290
XbaI	TCTAGA	1 cut(s)	358
XhoI	CTCGAG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	1 cut(s)	359
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.