Rmu_co8351319.1_g000001

Villin-4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8351319.1
OG0001569
Physical Location & Seq
Forward (+)
45 .. 1043
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8351319.1_g000001.1.cds

Sequence Viewer

Length: 416 bp
atggctgtttccatgagagatttggatccagctttccacggagctggacaaaaggctggactcgaaatatggcgcattgaaaactttcatcctgttattgtcccacaatcctctcatggaaagttttttatgggggactcttatgtgatcttgaaaacaacagcttcaaaaagtggtgccttgcgacatgatatccattattggcttggtaaagatacttctcaggatgaagcaggcactgcagccattaagacagttgaattagatgcagctcttggaggacgtgctgttcagtatcgtgaagtacagggtcatgaaactgctaaatttctatcttatttcaaaccgtgtatcatacctcaagaaggtggaattgcttctgggtttaaacatgctgaggctgaagaacatacaac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0006810 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010038 GO:0010053 GO:0010054 GO:0010639 GO:0015629 GO:0016043 GO:0016049 GO:0016482 GO:0021700 GO:0022411 GO:0022622 GO:0030029 GO:0030036 GO:0030042 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0033043 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0043624 GO:0043933 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046907 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051014 GO:0051015 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051261 GO:0051493 GO:0051494 GO:0051592 GO:0051641 GO:0051649 GO:0051693 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080147 GO:0090066 GO:0090558 GO:0090627 GO:0097305 GO:0097435 GO:0099402 GO:0099636 GO:0110053 GO:1901700 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko04666 ko04810 ko05203 map04666 map04810 map05203
Pfam Domains
Protein Families
Gelsolin VHP

Protein Analysis

139

Amino Acids

15.21

Weight (kDa)

6.22

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AclWI GGATC 2 cut(s) 20, 33
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 5 cut(s) 80, 154, 168, 260, 343
AjiI CACGTC 1 cut(s) 284
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 4 cut(s) 32, 44, 164, 272
AluI AGCT 4 cut(s) 32, 44, 164, 272
AlwI GGATC 2 cut(s) 20, 33
AlwNI CAGNNNCTG 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 242, 269
ApoI RAATTY 1 cut(s) 326
Asp700I GAANNNNTTC 2 cut(s) 84, 376
AspLEI GCGC 1 cut(s) 75
BamHI GGATCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 202, 234
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 254, 281
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 243, 270
BlsI GCNGC 2 cut(s) 244, 271
BmgBI CACGTC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 27, 178
BmsI GCATC 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 2 cut(s) 88, 232
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 2 cut(s) 236, 387
BseXI GCAGC 2 cut(s) 254, 281
BshNI GGYRCC 1 cut(s) 176
BslFI GGGAC 2 cut(s) 86, 149
BslI CCNNNNNNNGG 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 86, 149
Bsp143I GATC 2 cut(s) 25, 147
BspCNI CTCAG 2 cut(s) 235, 388
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 27, 178
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 2 cut(s) 20, 33
BspT107I GGYRCC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 2 cut(s) 25, 147
Bst4CI ACNGT 2 cut(s) 256, 348
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 222, 396
BstDSI CCRYGG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 88, 232
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 28, 150
BstMBI GATC 2 cut(s) 25, 147
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 395
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 254, 281
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 37
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 2 cut(s) 88, 232
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 239
CciI TCATGA 1 cut(s) 313
CfoI GCGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 305
CviAII CATG 5 cut(s) 13, 116, 188, 314, 392
CviJI RGCY 9 cut(s) 5, 32, 44, 56, 164, 205, 245, 272, 401
CviKI_1 RGCY 9 cut(s) 5, 32, 44, 56, 164, 205, 245, 272, 401
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 222, 396
DpnI GATC 2 cut(s) 27, 149
DpnII GATC 2 cut(s) 25, 147
DraI TTTAAA 1 cut(s) 388
Eco32I GATATC 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoRV GATATC 1 cut(s) 193
FaeI CATG 5 cut(s) 16, 119, 191, 317, 395
FaqI GGGAC 2 cut(s) 86, 149
FatI CATG 5 cut(s) 12, 115, 187, 313, 391
Fnu4HI GCNGC 2 cut(s) 243, 270
FokI GGATG 2 cut(s) 75, 239
Fsp4HI GCNGC 2 cut(s) 243, 270
GlaI GCGC 1 cut(s) 74
GluI GCNGC 2 cut(s) 243, 270
HhaI GCGC 1 cut(s) 75
Hin1II CATG 5 cut(s) 16, 119, 191, 317, 395
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 2 cut(s) 60, 137
Hpy188III TCNNGA 5 cut(s) 151, 224, 299, 314, 362
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 2 cut(s) 256, 348
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 242, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 222, 396
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 5 cut(s) 16, 119, 191, 317, 395
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 25, 147
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 8 cut(s) 30, 42, 42, 105, 209, 219, 293, 366
Lsp1109I GCAGC 2 cut(s) 254, 281
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 283
MalI GATC 2 cut(s) 27, 149
MboI GATC 2 cut(s) 25, 147
MboII GAAGA 1 cut(s) 416
MflI RGATCY 1 cut(s) 25
MluCI AATT 3 cut(s) 260, 326, 372
MlyI GAGTC 2 cut(s) 54, 131
MnlI CCTC 4 cut(s) 121, 272, 369, 391
MroXI GAANNNNTTC 2 cut(s) 84, 376
MseI TTAA 2 cut(s) 249, 387
MssI GTTTAAAC 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 25, 147
NlaIII CATG 5 cut(s) 16, 119, 191, 317, 395
NlaIV GGNNCC 2 cut(s) 27, 178
NspI RCATGY 1 cut(s) 395
PagI TCATGA 1 cut(s) 313
PdmI GAANNNNTTC 2 cut(s) 84, 376
PkrI GCNGC 2 cut(s) 244, 271
PleI GAGTC 2 cut(s) 54, 131
PmeI GTTTAAAC 1 cut(s) 388
PpsI GAGTC 2 cut(s) 54, 131
PspN4I GGNNCC 2 cut(s) 27, 178
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 249, 387
SatI GCNGC 2 cut(s) 243, 270
Sau3AI GATC 2 cut(s) 25, 147
SchI GAGTC 2 cut(s) 54, 131
SetI ASST 7 cut(s) 34, 46, 166, 274, 286, 361, 370
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
Sse9I AATT 3 cut(s) 260, 326, 372
TaaI ACNGT 2 cut(s) 256, 348
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 63
TasI AATT 3 cut(s) 260, 326, 372
TatI WGTACW 1 cut(s) 304
Tru1I TTAA 2 cut(s) 249, 387
Tru9I TTAA 2 cut(s) 249, 387
TscAI CASTG 1 cut(s) 244
TseI GCWGC 2 cut(s) 242, 269
TspDTI ATGAA 3 cut(s) 77, 243, 330
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 363
XapI RAATTY 1 cut(s) 326
XceI RCATGY 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 2 cut(s) 19, 203
XmnI GAANNNNTTC 2 cut(s) 84, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.