Rmu_co8425269.1_g000001

Villin-4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8425269.1
OG0001569
Physical Location & Seq
Forward (+)
1 .. 1446
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8425269.1_g000001.1.cds

Sequence Viewer

Length: 606 bp
gtttcttttgctcgatcttcactcaaccacgacgacatttttgttctggataccaagtctaaaatttttcagtttaatggttccaactcatccattcaagaaagggcaaaggctttagaagttgtccagtacattaaagacacgtttcacgacgggaagtgtgacatagcttccattgaggatggaaagttgatggctgatgctgatactggagaattctgggctttatttggtggttttgctccacttccgaagaaaacagcgaatgatgaggacaaaatttttgattctcatagtactaagctacttcgcgttgagaaagagaaggcagaaccagttgaggctgattctttgacaagggaattactagaaacaaataagtgctatcttctagattgtgggctggagttgtttgtttggatggggagaaacacatcgcttgatgaaaggaggagcgcaagtggagctgccgaagagttgctacgtggtcctgatcgtcctaaatcccatatgattcgtgttattgagggattcgagacggtaatgttcaagtccaaatttgattcatggcctcaaacagttgaagtagctgtgtcagaggatggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0006810 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010038 GO:0010053 GO:0010054 GO:0010639 GO:0015629 GO:0016043 GO:0016049 GO:0016482 GO:0021700 GO:0022411 GO:0022622 GO:0030029 GO:0030036 GO:0030042 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0033043 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0043624 GO:0043933 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046907 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051014 GO:0051015 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051261 GO:0051493 GO:0051494 GO:0051592 GO:0051641 GO:0051649 GO:0051693 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080147 GO:0090066 GO:0090558 GO:0090627 GO:0097305 GO:0097435 GO:0099402 GO:0099636 GO:0110053 GO:1901700 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko04666 ko04810 ko05203 map04666 map04810 map05203
Pfam Domains
Protein Families
Gelsolin VHP

Protein Analysis

202

Amino Acids

22.69

Weight (kDa)

4.9

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AcsI RAATTY 4 cut(s) 63, 215, 279, 557
AfaI GTAC 2 cut(s) 131, 298
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 98, 550, 584
AluBI AGCT 4 cut(s) 170, 304, 467, 590
AluI AGCT 4 cut(s) 170, 304, 467, 590
Alw26I GTCTC 1 cut(s) 530
AoxI GGCC 1 cut(s) 569
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 4 cut(s) 63, 215, 279, 557
ArsI GACNNNNNNTTYG 4 cut(s) 23, 55, 266, 298
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 488
AvaII GGWCC 1 cut(s) 488
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BbvI GCAGC 1 cut(s) 454
BccI CCATC 4 cut(s) 176, 187, 415, 596
BciVI GTATCC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 2 cut(s) 368, 392
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
BmcAI AGTACT 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 190
BpmI CTGGAG 2 cut(s) 231, 425
BsaAI YACGTR 1 cut(s) 485
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bse1I ACTGG 3 cut(s) 127, 214, 335
BseGI GGATG 3 cut(s) 89, 187, 426
BseNI ACTGG 3 cut(s) 127, 214, 335
BseRI GAGGAG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 530
BsmBI CGTCTC 1 cut(s) 530
BsnI GGCC 1 cut(s) 571
Bsp143I GATC 2 cut(s) 14, 493
BspANI GGCC 1 cut(s) 571
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 82
BsrI ACTGG 3 cut(s) 127, 214, 335
BssMI GATC 2 cut(s) 14, 493
Bst4CI ACNGT 2 cut(s) 541, 580
Bst6I CTCTTC 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 485
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 89, 187, 426
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 2 cut(s) 17, 496
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 2 cut(s) 14, 493
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 454
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 571
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 3 cut(s) 89, 187, 426
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 2 cut(s) 130, 297
CviAII CATG 1 cut(s) 567
CviQI GTAC 2 cut(s) 130, 297
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 16, 495
DpnII GATC 2 cut(s) 14, 493
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 488
EcoRI GAATTC 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 530
FaeI CATG 1 cut(s) 570
FaiI YATR 5 cut(s) 167, 294, 510, 512, 568
FatI CATG 1 cut(s) 566
FauNDI CATATG 1 cut(s) 510
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 3 cut(s) 76, 194, 433
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 368, 392
GlaI GCGC 1 cut(s) 457
GluI GCNGC 1 cut(s) 468
GsuI CTGGAG 2 cut(s) 231, 425
HaeIII GGCC 1 cut(s) 571
HhaI GCGC 1 cut(s) 458
Hin1II CATG 1 cut(s) 570
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 5 cut(s) 287, 347, 514, 531, 563
Hpy188I TCNGA 2 cut(s) 252, 598
Hpy188III TCNNGA 6 cut(s) 47, 98, 149, 392, 491, 535
Hpy99I CGWCG 2 cut(s) 35, 155
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 541, 580
HpyCH4IV ACGT 2 cut(s) 143, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 143, 484
Hsp92II CATG 1 cut(s) 570
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 2 cut(s) 14, 493
LmnI GCTCC 3 cut(s) 247, 453, 464
LpnPI CCDG 7 cut(s) 32, 140, 195, 205, 348, 389, 504
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 368, 392
MaeII ACGT 2 cut(s) 143, 484
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 16, 495
MboI GATC 2 cut(s) 14, 493
MboII GAAGA 4 cut(s) 9, 265, 380, 485
MluCI AATT 5 cut(s) 63, 215, 279, 362, 557
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 7 cut(s) 172, 265, 334, 444, 520, 582, 592
MseI TTAA 2 cut(s) 75, 135
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeI CATATG 1 cut(s) 510
NdeII GATC 2 cut(s) 14, 493
NlaIII CATG 1 cut(s) 570
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 161
PfeI GAWTC 5 cut(s) 287, 347, 514, 531, 563
PkrI GCNGC 1 cut(s) 469
Ppu21I YACGTR 1 cut(s) 485
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 488
RsaI GTAC 2 cut(s) 131, 298
RsaNI GTAC 2 cut(s) 130, 297
SaqAI TTAA 2 cut(s) 75, 135
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 2 cut(s) 14, 493
Sau96I GGNCC 1 cut(s) 488
ScaI AGTACT 1 cut(s) 298
SetI ASST 6 cut(s) 146, 172, 306, 469, 487, 592
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 1 cut(s) 488
Sse9I AATT 5 cut(s) 63, 215, 279, 362, 557
SspMI CTAG 2 cut(s) 368, 392
TaaI ACNGT 2 cut(s) 541, 580
TaiI ACGT 2 cut(s) 146, 487
TaqI TCGA 2 cut(s) 13, 534
TasI AATT 5 cut(s) 63, 215, 279, 362, 557
TatI WGTACW 2 cut(s) 129, 296
TfiI GAWTC 5 cut(s) 287, 347, 514, 531, 563
Tru1I TTAA 2 cut(s) 75, 135
Tru9I TTAA 2 cut(s) 75, 135
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 459, 555
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 4 cut(s) 63, 215, 279, 557
XbaI TCTAGA 1 cut(s) 391
XspI CTAG 2 cut(s) 368, 392
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.