Rmu_sc0035953.1_g000001

Villin-4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035953.1
OG0001569
Physical Location & Seq
Forward (+)
552 .. 1283
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035953.1_g000001.1.cds

Sequence Viewer

Length: 549 bp
atgtctttcagtcctgaccgagtgcgtgtgaggggcaggtctccagctttcaatgcactggctgctacttttgagagtgctaatgcgaggaacctttcaactccacccccaatggtcagaaaatcccaactgtatccaaaatctgtaaccccagattcatcaaaattggcttcaaagtcatcagctatagcggcactcactgctagctttgaaaagacaaacaatataccaagatcacctaaaggggctccgaaaccaaaaccagagacaaatagcaaggacacttttatgagcagcaaaatggaatccctcacgatagaggaagatgtgaaagagggtgaagcagaagatgaaggtgttcccatttacccatatgaacgccttaaaacaacgtcagcggaacctgttgcagaaattgatgtgacgaagcgagagatttacttgtcatcagaggagttcagggagcatcttgggatggcaaaggatgctttttataagttgcccaagtggaaacagaacaagcttaaaatggccgttcaactgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0006810 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010038 GO:0010053 GO:0010054 GO:0010639 GO:0015629 GO:0016043 GO:0016049 GO:0016482 GO:0021700 GO:0022411 GO:0022622 GO:0030029 GO:0030036 GO:0030042 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0033043 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0043624 GO:0043933 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046907 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051014 GO:0051015 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051261 GO:0051493 GO:0051494 GO:0051592 GO:0051641 GO:0051649 GO:0051693 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080147 GO:0090066 GO:0090558 GO:0090627 GO:0097305 GO:0097435 GO:0099402 GO:0099636 GO:0110053 GO:1901700 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko04666 ko04810 ko05203 map04666 map04810 map05203
Pfam Domains
Protein Families
Gelsolin VHP

Protein Analysis

182

Amino Acids

20.29

Weight (kDa)

9.3

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
Acc36I ACCTGC 1 cut(s) 27
AciI CCGC 2 cut(s) 191, 398
AcoI YGGCCR 1 cut(s) 531
AgsI TTSAA 5 cut(s) 52, 99, 174, 212, 539
AluBI AGCT 4 cut(s) 47, 185, 207, 523
AluI AGCT 4 cut(s) 47, 185, 207, 523
Alw26I GTCTC 2 cut(s) 45, 260
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 2 cut(s) 62, 294
Asp700I GAANNNNTTC 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 228, 350
AsuNHI GCTAGC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 49, 306
BccI CCATC 1 cut(s) 469
BceAI ACGGC 1 cut(s) 518
BciVI GTATCC 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 45, 260
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 27
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 3 cut(s) 63, 192, 295
BlsI GCNGC 3 cut(s) 64, 193, 296
BmiI GGNNCC 3 cut(s) 92, 249, 402
BmsI GCATC 2 cut(s) 475, 475
BmtI GCTAGC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 480, 490
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 2 cut(s) 49, 306
BshFI GGCC 1 cut(s) 533
BsmAI GTCTC 2 cut(s) 45, 260
BsnI GGCC 1 cut(s) 533
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 233
BspACI CCGC 2 cut(s) 191, 398
BspANI GGCC 1 cut(s) 533
BspLI GGNNCC 3 cut(s) 92, 249, 402
BspMI ACCTGC 1 cut(s) 27
BspOI GCTAGC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 63
BssMI GATC 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 132, 543
BstAPI GCANNNNNTGC 3 cut(s) 62, 200, 485
BstC8I GCNNGC 1 cut(s) 205
BstF5I GGATG 2 cut(s) 480, 490
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 2 cut(s) 45, 260
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 5 cut(s) 53, 62, 191, 200, 485
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 49, 306
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 533
BtsCI GGATG 2 cut(s) 480, 490
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 56, 198
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 205
CviJI RGCY 8 cut(s) 47, 62, 170, 185, 207, 248, 523, 533
CviKI_1 RGCY 8 cut(s) 47, 62, 170, 185, 207, 248, 523, 533
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 250
FaiI YATR 6 cut(s) 188, 227, 290, 373, 375, 495
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 63, 192, 295
FokI GGATG 2 cut(s) 487, 497
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 3 cut(s) 63, 192, 295
FspBI CTAG 1 cut(s) 204
GluI GCNGC 3 cut(s) 63, 192, 295
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 533
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 2 cut(s) 155, 305
HphI GGTGA 2 cut(s) 228, 350
Hpy188I TCNGA 3 cut(s) 119, 252, 451
Hpy188III TCNNGA 2 cut(s) 14, 313
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 2 cut(s) 132, 543
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 2 cut(s) 56, 410
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 62, 191, 200, 485
HpySE526I ACGT 1 cut(s) 392
Kzo9I GATC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 253, 463
LpnPI CCDG 8 cut(s) 22, 27, 44, 57, 165, 276, 417, 445
Lsp1109I GCAGC 2 cut(s) 49, 306
LweI GCATC 2 cut(s) 475, 475
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 2 cut(s) 145, 421
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 2 cut(s) 335, 359
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 164, 414
MnlI CCTC 6 cut(s) 24, 81, 313, 320, 328, 445
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 2 cut(s) 384, 525
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 398
MwoI GCNNNNNNNGC 5 cut(s) 53, 62, 191, 200, 485
NdeI CATATG 1 cut(s) 373
NdeII GATC 1 cut(s) 233
NheI GCTAGC 1 cut(s) 203
NlaIV GGNNCC 3 cut(s) 92, 249, 402
NmuCI GTSAC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 155, 305
PkrI GCNGC 3 cut(s) 64, 193, 296
PsiI TTATAA 1 cut(s) 495
PspN4I GGNNCC 3 cut(s) 92, 249, 402
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 2 cut(s) 384, 525
SatI GCNGC 3 cut(s) 63, 192, 295
Sau3AI GATC 1 cut(s) 233
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 2 cut(s) 475, 475
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 2 cut(s) 164, 414
SsiI CCGC 2 cut(s) 191, 398
SspMI CTAG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 132, 543
TaiI ACGT 1 cut(s) 395
TaqII GACCGA 1 cut(s) 33
TasI AATT 2 cut(s) 164, 414
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 2 cut(s) 155, 305
Tru1I TTAA 2 cut(s) 384, 525
Tru9I TTAA 2 cut(s) 384, 525
TscAI CASTG 2 cut(s) 63, 205
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 2 cut(s) 62, 294
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 3 cut(s) 147, 366, 390
TspRI CASTG 2 cut(s) 63, 205
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.