Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8351855.1

Orthogroup ID

OG0004714

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1045

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8351855.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 721 bp

gtggaaataaatactcggcaattttttgaaggatatacggaaggaagaatgtatggaaatttgtggccagagatgcttaagctgaaggattggcccccttctgataagtttgagaatcttttgccccgacattgtgatgaatttattactgccttgccatttcaagagtacacagatcctagagctggacttcttaaccttgctgttaagttgccacctggagtcttgaaaccagacatgggtccaaaaacatatattgcttatgggcttgtggaagagcttggaagaggggattccgtaaccaagctgcattgtgatatgtctgatgcggttaatattttgacacatacagcagaaataaagctaggtgatgagcagaaatcggcaatttcaatgctaaaagaattacatagagcccaagatgagagagagcttcagaattgggtgaattctcagtctggacagtctggagcacagatagggaatgatgaagaaatcatagaaaagaattacaatagggaattgaaggttccagaagatgatgcagatgggcccactctttctggttctccctgcacggaagcagtagaggaaaccggtggtgctttgtgggacattttccgcagggaagatgtccctaagttggaggcttatctgaagaagcactataaagaattcaggcacacttactgttcgttagttgaacgagtaagtatggtat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

240

Amino Acids

27.33

Weight (kDa)

4.92

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11950 AT1G11950 AT1G11950 AT1G62310
fragaria_vesca	FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550
malus_domestica	MD05G1351300.v1.1 MD10G1325700.v1.1
prunus_persica	Prupe.4G016300_v2.0.a1
pyrus_communis	pycom05g31840 pycom10g27540
rosa_chinensis	RchiOBHm_Chr5g0002371
rosa_laevigata	RLG00000031023
rosa_multiflora	Rmu_co8351855.1_g000001 Rmu_co8445921.1_g000001 Rmu_sc0006137.1_g000004 Rmu_sc0006137.1_g000005 Rmu_sc0017945.1_g000004
rosa_rugosa	Rorug04G0395600 Rorug04G0395700.1
rosa_samantha	Rh5AG018400 Rh5BG021100 Rh5CG020300 Rh5DG019300
rosa_wichuraiana	Rw5G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	329, 622
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	4 cut(s)	58, 140, 448, 674
AcuI	CTGAAG	3 cut(s)	104, 419, 677
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	185, 239, 643
AflII	CTTAAG	1 cut(s)	77
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	6 cut(s)	29, 164, 229, 393, 526, 704
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	6 cut(s)	82, 185, 280, 307, 364, 433
AluI	AGCT	6 cut(s)	82, 185, 280, 307, 364, 433
Alw21I	GWGCWC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	65, 92, 551
ApaI	GGGCCC	1 cut(s)	555
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	4 cut(s)	58, 140, 448, 674
AsiGI	ACCGGT	1 cut(s)	596
AspS9I	GGNCC	4 cut(s)	93, 242, 551, 552
AsuHPI	GGTGA	2 cut(s)	380, 457
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	418, 555
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	219
BfaI	CTAG	2 cut(s)	180, 365
BfrI	CTTAAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	4 cut(s)	93, 242, 551, 552
BmiI	GGNNCC	4 cut(s)	95, 243, 531, 553
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	63, 316, 532
BoxI	GACNNNNGTC	1 cut(s)	240
BpmI	CTGGAG	2 cut(s)	240, 489
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 239, 643
Bse118I	RCCGGY	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	185, 239, 643
BseMII	CTCAG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	559
BshFI	GGCC	3 cut(s)	67, 94, 553
BshTI	ACCGGT	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	620, 626
BslI	CCNNNNNNNGG	3 cut(s)	185, 239, 643
BsmFI	GGGAC	2 cut(s)	620, 626
BsnI	GGCC	3 cut(s)	67, 94, 553
Bsp120I	GGGCCC	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	418, 475, 555
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	2 cut(s)	329, 622
BspANI	GGCC	3 cut(s)	67, 94, 553
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	95, 243, 531, 553
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	270
BspTI	CTTAAG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	596
BssAI	RCCGGY	1 cut(s)	596
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	465, 692
Bst6I	CTCTTC	2 cut(s)	270, 280
BstAFI	CTTAAG	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	453, 639
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	219
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	67, 94, 553
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	4 cut(s)	93, 242, 551, 552
Csp6I	GTAC	1 cut(s)	169
CspAI	ACCGGT	1 cut(s)	596
CviAII	CATG	1 cut(s)	238
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	453, 639
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	270, 280
EarI	CTCTTC	2 cut(s)	270, 280
Eco24I	GRGCYC	2 cut(s)	418, 555
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	3 cut(s)	104, 419, 677
EcoRI	GAATTC	2 cut(s)	448, 674
EcoRII	CCWGG	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	418, 555
FaeI	CATG	1 cut(s)	241
FaqI	GGGAC	2 cut(s)	620, 626
FatI	CATG	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	308
FriOI	GRGCYC	2 cut(s)	418, 555
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	2 cut(s)	180, 365
GluI	GCNGC	1 cut(s)	308
GsuI	CTGGAG	2 cut(s)	240, 489
HaeIII	GGCC	3 cut(s)	67, 94, 553
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	3 cut(s)	115, 222, 293
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	2 cut(s)	380, 457
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	4 cut(s)	103, 325, 438, 657
Hpy188III	TCNNGA	5 cut(s)	164, 226, 459, 468, 533
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	5 cut(s)	23, 35, 79, 108, 520
HpyCH4III	ACNGT	2 cut(s)	465, 692
HpyCH4V	TGCA	3 cut(s)	310, 545, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	453, 639
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	3 cut(s)	63, 316, 532
MaeI	CTAG	2 cut(s)	180, 365
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	7 cut(s)	57, 287, 297, 503, 548, 641, 670
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	3 cut(s)	418, 475, 555
MlsI	TGGCCA	1 cut(s)	67
MluNI	TGGCCA	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	3 cut(s)	281, 583, 640
Mox20I	TGGCCA	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	67
MseI	TTAA	4 cut(s)	78, 195, 207, 333
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	67
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	4 cut(s)	95, 243, 531, 553
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	115, 293
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PshAI	GACNNNNGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	4 cut(s)	95, 243, 531, 553
PspOMI	GGGCCC	1 cut(s)	551
PspPI	GGNCC	4 cut(s)	93, 242, 551, 552
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	4 cut(s)	78, 195, 207, 333
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	4 cut(s)	93, 242, 551, 552
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	3 cut(s)	418, 475, 555
SfaNI	GCATC	3 cut(s)	63, 316, 532
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SsiI	CCGC	2 cut(s)	329, 622
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	180, 365
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	465, 692
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	115, 293
Tru1I	TTAA	4 cut(s)	78, 195, 207, 333
Tru9I	TTAA	4 cut(s)	78, 195, 207, 333
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	153, 504
TspGWI	ACGGA	3 cut(s)	53, 286, 593
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	4 cut(s)	58, 140, 448, 674
XspI	CTAG	2 cut(s)	180, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.