Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8445921.1

Orthogroup ID

OG0004714

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1439

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8445921.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgcaagaatcaaaaactattgtttcttgctccaagtgtgaaaacaactcttattgtatccgttgtatcaaggaatggtatcctcacatgaaggtacaggatgtcaaggaactttgcccattttgccgcagaaattgcaactgtaatgcttgcctccactcaactggcatgattaagacaccaaaacgggacataagcgactatgaaaaggctcagcatttggcgcatttaattcgctccatgcttccatttctgaaggaattttctgatgaacaaaaggaggagatacagattgaagctaatattcaaggagagtcgctttccaacattataatagaacaaaccctctgttacaatgatgagcgtgtctattgcaaccactgtgcaacttcaattgttgatctgcatcgaagctgccctaaatgtctatatgaactatgtctaagttgttgtagagaaattaggcagggatgccttttagaccgtgcagaggtgaagtttcaatataggaatatgggttgcgagtacattcatggtggagatccatcacctgaatgttgttccttagaagctccagacaatcatattgagcctttgactgggtggaatgagcctttgactgggtggagtgcaaatgatgataatagtattacttgtgctccaaaggaaatgggtggctgcggtgagagcaacttggctctgaagcgaatccttccttgtgattggattgcaagtttagaagcaaaagccaaaactgtactagacatttgcgaaaccaaatactgtaccttcaagcatgaatgtggtgaaagaagaattgatatgttgcgaaaggcagcttctagggaggattcttgtgacaactctttatattgtccagattcaagggacactctgaaagaaggagatcttttgcacttcagaaaacattggattaatggtgaaccagtcatagttcaaaatgtacttgaacaggcaaatggtctgagctgggagccaatggtcatgtggcgtgctttaagtgaaaatatggatccaaatagtacctcacaattttcagaggtcaagaccattgattgcctggctggctgtgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

365

Amino Acids

41.67

Weight (kDa)

5.28

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11950 AT1G11950 AT1G11950 AT1G62310
fragaria_vesca	FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550
malus_domestica	MD05G1351300.v1.1 MD10G1325700.v1.1
prunus_persica	Prupe.4G016300_v2.0.a1
pyrus_communis	pycom05g31840 pycom10g27540
rosa_chinensis	RchiOBHm_Chr5g0002371
rosa_laevigata	RLG00000031023
rosa_multiflora	Rmu_co8351855.1_g000001 Rmu_co8445921.1_g000001 Rmu_sc0006137.1_g000004 Rmu_sc0006137.1_g000005 Rmu_sc0017945.1_g000004
rosa_rugosa	Rorug04G0395600 Rorug04G0395700.1
rosa_samantha	Rh5AG018400 Rh5BG021100 Rh5CG020300 Rh5DG019300
rosa_wichuraiana	Rw5G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AciI	CCGC	2 cut(s)	127, 681
AclWI	GGATC	3 cut(s)	536, 1028, 1041
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	3 cut(s)	275, 722, 904
AfaI	GTAC	6 cut(s)	96, 527, 759, 787, 966, 1045
AfiI	CCNNNNNNNGG	3 cut(s)	490, 599, 620
AgsI	TTSAA	8 cut(s)	296, 308, 393, 503, 793, 885, 959, 971
AjnI	CCWGG	1 cut(s)	1080
AluBI	AGCT	5 cut(s)	299, 414, 572, 839, 990
AluI	AGCT	5 cut(s)	299, 414, 572, 839, 990
Alw21I	GWGCWC	1 cut(s)	661
AlwI	GGATC	3 cut(s)	536, 1028, 1041
ApeKI	GCWGC	3 cut(s)	414, 678, 836
ApoI	RAATTY	1 cut(s)	260
AseI	ATTAAT	1 cut(s)	936
AspLEI	GCGC	1 cut(s)	226
AsuHPI	GGTGA	5 cut(s)	505, 540, 695, 818, 953
BamHI	GGATCC	1 cut(s)	1033
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	3 cut(s)	401, 665, 848
BccI	CCATC	1 cut(s)	553
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	1082
BciVI	GTATCC	2 cut(s)	68, 90
BfaI	CTAG	2 cut(s)	761, 843
BfuI	GTATCC	2 cut(s)	68, 90
BglI	GCCNNNNNGGC	1 cut(s)	1086
BglII	AGATCT	1 cut(s)	907
BisI	GCNGC	4 cut(s)	127, 415, 679, 837
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	4 cut(s)	128, 416, 680, 838
Bme1390I	CCNGG	1 cut(s)	1082
BmiI	GGNNCC	2 cut(s)	996, 1035
BmrFI	CCNGG	1 cut(s)	1082
BmrI	ACTGGG	2 cut(s)	609, 630
BmsI	GCATC	2 cut(s)	415, 461
BmuI	ACTGGG	2 cut(s)	609, 630
BpmI	CTGGAG	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 599, 620
Bse1I	ACTGG	4 cut(s)	169, 604, 625, 947
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	1082
BseGI	GGATG	2 cut(s)	106, 476
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	490, 599, 620
BseMII	CTCAG	2 cut(s)	227, 977
BseNI	ACTGG	4 cut(s)	169, 604, 625, 947
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	401, 665, 848
BseYI	CCCAGC	1 cut(s)	990
BsgI	GTGCAG	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	661
BslFI	GGGAC	2 cut(s)	203, 902
BslI	CCNNNNNNNGG	3 cut(s)	490, 599, 620
BsmFI	GGGAC	2 cut(s)	203, 902
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	400, 541, 907, 1033
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	127, 681
BspCNI	CTCAG	2 cut(s)	226, 978
BspLI	GGNNCC	2 cut(s)	996, 1035
BspPI	GGATC	3 cut(s)	536, 1028, 1041
BsrI	ACTGG	4 cut(s)	169, 604, 625, 947
BssMI	GATC	4 cut(s)	400, 541, 907, 1033
Bst2UI	CCWGG	1 cut(s)	1082
Bst4CI	ACNGT	5 cut(s)	143, 383, 485, 757, 785
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	151, 1014, 1087
BstDEI	CTNAG	4 cut(s)	213, 443, 565, 986
BstF5I	GGATG	2 cut(s)	106, 476
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	403, 544, 910, 1036
BstMBI	GATC	4 cut(s)	400, 541, 907, 1033
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 135, 223, 687, 1086
BstNI	CCWGG	1 cut(s)	1082
BstSCI	CCNGG	1 cut(s)	1080
BstV1I	GCAGC	3 cut(s)	401, 665, 848
BstX2I	RGATCY	3 cut(s)	541, 907, 1033
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstYI	RGATCY	3 cut(s)	541, 907, 1033
BsuI	GTATCC	2 cut(s)	68, 90
BtsCI	GGATG	2 cut(s)	106, 476
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	151, 1014, 1087
CfoI	GCGC	1 cut(s)	226
Csp6I	GTAC	6 cut(s)	95, 526, 758, 786, 965, 1044
CviAII	CATG	6 cut(s)	88, 169, 241, 533, 797, 1006
CviQI	GTAC	6 cut(s)	95, 526, 758, 786, 965, 1044
DdeI	CTNAG	4 cut(s)	213, 443, 565, 986
DpnI	GATC	4 cut(s)	402, 543, 909, 1035
DpnII	GATC	4 cut(s)	400, 541, 907, 1033
Eco57I	CTGAAG	3 cut(s)	275, 722, 904
EcoRII	CCWGG	1 cut(s)	1080
FaeI	CATG	6 cut(s)	91, 172, 244, 536, 800, 1009
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	2 cut(s)	203, 902
FatI	CATG	6 cut(s)	87, 168, 240, 532, 796, 1005
Fnu4HI	GCNGC	4 cut(s)	127, 415, 679, 837
FokI	GGATG	2 cut(s)	113, 483
Fsp4HI	GCNGC	4 cut(s)	127, 415, 679, 837
FspBI	CTAG	2 cut(s)	761, 843
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	4 cut(s)	127, 415, 679, 837
GsaI	CCCAGC	1 cut(s)	994
GsuI	CTGGAG	1 cut(s)	558
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	6 cut(s)	91, 172, 244, 536, 800, 1009
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	5 cut(s)	8, 314, 708, 851, 881
HphI	GGTGA	5 cut(s)	505, 540, 695, 818, 953
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188I	TCNGA	7 cut(s)	255, 268, 702, 897, 923, 987, 1060
Hpy188III	TCNNGA	3 cut(s)	575, 878, 1066
Hpy8I	GTNNAC	1 cut(s)	944
HpyAV	CCTTC	5 cut(s)	85, 250, 722, 799, 896
HpyCH4III	ACNGT	5 cut(s)	143, 383, 485, 757, 785
HpyCH4V	TGCA	9 cut(s)	4, 138, 375, 386, 406, 488, 632, 731, 916
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 135, 223, 687, 1086
HpyF3I	CTNAG	4 cut(s)	213, 443, 565, 986
Hsp92II	CATG	6 cut(s)	91, 172, 244, 536, 800, 1009
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	4 cut(s)	400, 541, 907, 1033
LmnI	GCTCC	5 cut(s)	35, 242, 577, 664, 994
Lsp1109I	GCAGC	3 cut(s)	401, 665, 848
LweI	GCATC	2 cut(s)	415, 461
MaeI	CTAG	2 cut(s)	761, 843
MaeIII	GTNAC	2 cut(s)	350, 857
MalI	GATC	4 cut(s)	402, 543, 909, 1035
MboI	GATC	4 cut(s)	400, 541, 907, 1033
MboII	GAAGA	1 cut(s)	825
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	3 cut(s)	541, 907, 1033
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	7 cut(s)	133, 231, 260, 393, 459, 816, 1052
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	8 cut(s)	93, 164, 274, 356, 484, 841, 1054, 1057
MseI	TTAA	4 cut(s)	174, 230, 936, 1019
MslI	CAYNNNNRTG	2 cut(s)	553, 801
MspR9I	CCNGG	1 cut(s)	1082
MunI	CAATTG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	5 cut(s)	123, 135, 223, 687, 1086
NdeII	GATC	4 cut(s)	400, 541, 907, 1033
NlaIII	CATG	6 cut(s)	91, 172, 244, 536, 800, 1009
NlaIV	GGNNCC	2 cut(s)	996, 1035
NmuCI	GTSAC	1 cut(s)	857
PfeI	GAWTC	4 cut(s)	8, 708, 851, 881
PkrI	GCNGC	4 cut(s)	128, 416, 680, 838
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	936
PsiI	TTATAA	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	1080
PspFI	CCCAGC	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	1080
PspN4I	GGNNCC	2 cut(s)	996, 1035
PsuI	RGATCY	3 cut(s)	541, 907, 1033
RsaI	GTAC	6 cut(s)	96, 527, 759, 787, 966, 1045
RsaNI	GTAC	6 cut(s)	95, 526, 758, 786, 965, 1044
RseI	CAYNNNNRTG	2 cut(s)	553, 801
SaqAI	TTAA	4 cut(s)	174, 230, 936, 1019
SatI	GCNGC	4 cut(s)	127, 415, 679, 837
Sau3AI	GATC	4 cut(s)	400, 541, 907, 1033
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	1082
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	2 cut(s)	415, 461
SmiMI	CAYNNNNRTG	2 cut(s)	553, 801
Sse9I	AATT	7 cut(s)	133, 231, 260, 393, 459, 816, 1052
SsiI	CCGC	2 cut(s)	127, 681
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	2 cut(s)	761, 843
StyD4I	CCNGG	1 cut(s)	1080
TaaI	ACNGT	5 cut(s)	143, 383, 485, 757, 785
TaqI	TCGA	1 cut(s)	409
TasI	AATT	7 cut(s)	133, 231, 260, 393, 459, 816, 1052
TatI	WGTACW	3 cut(s)	525, 757, 964
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	4 cut(s)	8, 708, 851, 881
Tru1I	TTAA	4 cut(s)	174, 230, 936, 1019
Tru9I	TTAA	4 cut(s)	174, 230, 936, 1019
TscAI	CASTG	1 cut(s)	386
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	3 cut(s)	414, 678, 836
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	6 cut(s)	104, 219, 285, 447, 521, 813
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	386
VspI	ATTAAT	1 cut(s)	936
XapI	RAATTY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1005, 1078
XspI	CTAG	2 cut(s)	761, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.