Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006137.1

Orthogroup ID

OG0004714

Physical Location & Seq

Genomic Coordinates Reverse (-)

15550 .. 17428

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006137.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atgcaagttctgagagtggaagaaggaaggccgggccaatatagtgatagagacattggttccggcacgagagaattctcggagttactggagcatgaaaaggaggagctgctgcaggaccaatcagaagaggatgagaaggacaatggtcgcttacaggggaccggaactaagaagaggcggtttactccagaaattggagctccaaatggaaaaagaattagaaaaaagcaacttgcctcaaactattatgaagatgcagatgagttgatggatgaaatggagcatgacacagaaattgcctttatgatcaagtcaaaagcacggagaaggggaagtcctggccgtggaaagatcaacaggagttgctcagtggattcaggagttaaagatgagtccaagaatgctacttcttatacttcgtcttcttcaccaccatcttctccgaattcatcagtttcagttctaagatgggatcgtggtagatgcacttcaagacacataaagcagcaggataatggagatgtttgttttaagtgtcatcagtgtatgcaagaatcaaaaactattgtttcttgctccaagtgtgaaaacaactcttattgtatccgttgtatcaaggaatggtatcctcacatgaaggtacaggatgtcaaggaactttgcccattttgccgcagaaattgcaactgtaatgcttgcctccactcaactggcatgattaagacaccaaaacgggacataagcgactatgaaaaggctcagcatttggcgcatttaattcgctccatgcttccatttctgaaggaattttctgatgaacaaaaggaggagatacagattgaagctaatattcaaggagagtcgctttccaacattataatagaacaaaccctctgttacaatgatgagcgtgtctattgcaaccactgtgcaacttcaattgttgatctgcatcgaagctgccctaaatgtctatatgaactatgtctaagttgttgtagagaaattaggcagggatgccttttagaccgtgcagaggtgaagtttcaatataggaatatgggttgcgagtacattcatggtggagatccatcacctgaatgttgttccttagaagctccagacaatcatattgagcctttgactgggtggaatgagcctttgactgggtggagtgcaaatgatgataatagtattacttgtgctccaaaggaaatgggtggctgcggtgagagcaacttggctctgaagcgaatccttccttgtgattggattgcaagtttagaagcaaaagccaaaactgtactagacatttgcgaaaccaaatactgtaccttcaagcatgaatgtggtgaaagaagaattgatatgttgcgaaaggcagcttctagggaggattcttgtgacaactcgtcaagctctaggatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

477

Amino Acids

54.23

Weight (kDa)

5.98

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11950 AT1G11950 AT1G11950 AT1G62310
fragaria_vesca	FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550
malus_domestica	MD05G1351300.v1.1 MD10G1325700.v1.1
prunus_persica	Prupe.4G016300_v2.0.a1
pyrus_communis	pycom05g31840 pycom10g27540
rosa_chinensis	RchiOBHm_Chr5g0002371
rosa_laevigata	RLG00000031023
rosa_multiflora	Rmu_co8351855.1_g000001 Rmu_co8445921.1_g000001 Rmu_sc0006137.1_g000004 Rmu_sc0006137.1_g000005 Rmu_sc0017945.1_g000004
rosa_rugosa	Rorug04G0395600 Rorug04G0395700.1
rosa_samantha	Rh5AG018400 Rh5BG021100 Rh5CG020300 Rh5DG019300
rosa_wichuraiana	Rw5G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	197
AciI	CCGC	3 cut(s)	181, 676, 1230
AclWI	GGATC	2 cut(s)	483, 1085
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	3 cut(s)	74, 448, 809
AcuI	CTGAAG	2 cut(s)	824, 1271
AfaI	GTAC	4 cut(s)	645, 1076, 1308, 1336
AfiI	CCNNNNNNNGG	5 cut(s)	197, 347, 1039, 1148, 1169
AgsI	TTSAA	6 cut(s)	495, 845, 857, 942, 1052, 1342
AhdI	GACNNNNNGTC	1 cut(s)	1414
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	7 cut(s)	109, 203, 848, 963, 1121, 1388, 1422
AluI	AGCT	7 cut(s)	109, 203, 848, 963, 1121, 1388, 1422
Alw21I	GWGCWC	2 cut(s)	205, 1210
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	483, 1085
AoxI	GGCC	3 cut(s)	29, 34, 343
ApeKI	GCWGC	6 cut(s)	109, 112, 508, 963, 1227, 1385
ApoI	RAATTY	3 cut(s)	74, 448, 809
AspLEI	GCGC	1 cut(s)	775
AspS9I	GGNCC	3 cut(s)	34, 118, 162
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	5 cut(s)	423, 1054, 1089, 1244, 1367
AvaII	GGWCC	2 cut(s)	118, 162
BanII	GRGCYC	1 cut(s)	205
BarI	GAAGNNNNNNTAC	2 cut(s)	475, 507
BauI	CACGAG	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	205, 1210
BbvI	GCAGC	6 cut(s)	96, 99, 520, 950, 1214, 1397
BccI	CCATC	4 cut(s)	265, 445, 465, 1102
BceAI	ACGGC	1 cut(s)	330
BcgI	CGANNNNNNTGC	2 cut(s)	764, 798
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	2 cut(s)	617, 639
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	3 cut(s)	1310, 1392, 1425
BfmI	CTRYAG	1 cut(s)	113
BfuI	GTATCC	2 cut(s)	617, 639
BisI	GCNGC	7 cut(s)	110, 113, 509, 676, 964, 1228, 1386
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	7 cut(s)	111, 114, 510, 677, 965, 1229, 1387
Bme1390I	CCNGG	2 cut(s)	33, 342
Bme18I	GGWCC	2 cut(s)	118, 162
BmeRI	GACNNNNNGTC	1 cut(s)	1414
BmgT120I	GGNCC	3 cut(s)	34, 118, 162
BmiI	GGNNCC	2 cut(s)	61, 163
BmrFI	CCNGG	2 cut(s)	33, 342
BmrI	ACTGGG	2 cut(s)	1158, 1179
BmsI	GCATC	4 cut(s)	247, 476, 964, 1010
BmuI	ACTGGG	2 cut(s)	1158, 1179
BoxI	GACNNNNGTC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	3 cut(s)	110, 174, 1107
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuMI	CCSGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	954
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	1192, 1222
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 347, 1039, 1148, 1169
Bse1I	ACTGG	4 cut(s)	93, 718, 1153, 1174
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	4 cut(s)	139, 280, 655, 1025
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	5 cut(s)	197, 347, 1039, 1148, 1169
BseMII	CTCAG	2 cut(s)	384, 776
BseNI	ACTGG	4 cut(s)	93, 718, 1153, 1174
BseRI	GAGGAG	2 cut(s)	119, 845
BseXI	GCAGC	6 cut(s)	96, 99, 520, 950, 1214, 1397
BsgI	GTGCAG	1 cut(s)	1056
BshFI	GGCC	3 cut(s)	31, 36, 345
BsiHKAI	GWGCWC	2 cut(s)	205, 1210
BsiSI	CCGG	3 cut(s)	32, 63, 165
BslFI	GGGAC	2 cut(s)	175, 752
BslI	CCNNNNNNNGG	5 cut(s)	197, 347, 1039, 1148, 1169
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	2 cut(s)	175, 752
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	31, 36, 345
Bsp1286I	GDGCHC	2 cut(s)	205, 1210
Bsp143I	GATC	6 cut(s)	309, 354, 475, 949, 1090, 1428
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	3 cut(s)	181, 676, 1230
BspANI	GGCC	3 cut(s)	31, 36, 345
BspCNI	CTCAG	2 cut(s)	383, 775
BspLI	GGNNCC	2 cut(s)	61, 163
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	2 cut(s)	483, 1085
BsrI	ACTGG	4 cut(s)	93, 718, 1153, 1174
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	6 cut(s)	309, 354, 475, 949, 1090, 1428
BssSI	CACGAG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	5 cut(s)	692, 932, 1034, 1306, 1334
Bst6I	CTCTTC	2 cut(s)	123, 170
BstAPI	GCANNNNNTGC	1 cut(s)	684
BstC8I	GCNNGC	1 cut(s)	700
BstDEI	CTNAG	7 cut(s)	11, 171, 370, 467, 762, 992, 1114
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	4 cut(s)	139, 280, 655, 1025
BstHHI	GCGC	1 cut(s)	775
BstKTI	GATC	6 cut(s)	312, 357, 478, 952, 1093, 1431
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	6 cut(s)	309, 354, 475, 949, 1090, 1428
BstMWI	GCNNNNNNNGC	4 cut(s)	672, 684, 772, 1236
BstNI	CCWGG	1 cut(s)	342
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	31, 340
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	6 cut(s)	96, 99, 520, 950, 1214, 1397
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	2 cut(s)	1090, 1428
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	2 cut(s)	1090, 1428
BsuI	GTATCC	2 cut(s)	617, 639
BsuRI	GGCC	3 cut(s)	31, 36, 345
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	4 cut(s)	139, 280, 655, 1025
BtsIMutI	CAGTG	3 cut(s)	378, 551, 928
Cac8I	GCNNGC	1 cut(s)	700
CfoI	GCGC	1 cut(s)	775
Cfr13I	GGNCC	3 cut(s)	34, 118, 162
Csp6I	GTAC	4 cut(s)	644, 1075, 1307, 1335
CviAII	CATG	7 cut(s)	95, 287, 637, 718, 790, 1082, 1346
CviQI	GTAC	4 cut(s)	644, 1075, 1307, 1335
DdeI	CTNAG	7 cut(s)	11, 171, 370, 467, 762, 992, 1114
DpnI	GATC	6 cut(s)	311, 356, 477, 951, 1092, 1430
DpnII	GATC	6 cut(s)	309, 354, 475, 949, 1090, 1428
DriI	GACNNNNNGTC	1 cut(s)	1414
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	123, 170
Eam1105I	GACNNNNNGTC	1 cut(s)	1414
EarI	CTCTTC	2 cut(s)	123, 170
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	118, 162
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	2 cut(s)	824, 1271
EcoICRI	GAGCTC	1 cut(s)	203
EcoRI	GAATTC	2 cut(s)	74, 448
EcoRII	CCWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	7 cut(s)	98, 290, 640, 721, 793, 1085, 1349
FaqI	GGGAC	2 cut(s)	175, 752
FatI	CATG	7 cut(s)	94, 286, 636, 717, 789, 1081, 1345
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	7 cut(s)	110, 113, 509, 676, 964, 1228, 1386
FokI	GGATG	4 cut(s)	146, 287, 662, 1032
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	7 cut(s)	110, 113, 509, 676, 964, 1228, 1386
FspBI	CTAG	3 cut(s)	1310, 1392, 1425
GlaI	GCGC	1 cut(s)	774
GluI	GCNGC	7 cut(s)	110, 113, 509, 676, 964, 1228, 1386
GsuI	CTGGAG	3 cut(s)	110, 174, 1107
HaeIII	GGCC	3 cut(s)	31, 36, 345
HapII	CCGG	3 cut(s)	32, 63, 165
HhaI	GCGC	1 cut(s)	775
Hin1II	CATG	7 cut(s)	98, 290, 640, 721, 793, 1085, 1349
Hin6I	GCGC	1 cut(s)	773
HinP1I	GCGC	1 cut(s)	773
HinfI	GANTC	6 cut(s)	377, 395, 557, 863, 1257, 1400
HpaII	CCGG	3 cut(s)	32, 63, 165
HphI	GGTGA	5 cut(s)	423, 1054, 1089, 1244, 1367
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	8 cut(s)	12, 82, 127, 447, 804, 817, 1251, 1433
Hpy188III	TCNNGA	4 cut(s)	191, 381, 495, 1124
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	8 cut(s)	17, 21, 133, 324, 634, 799, 1271, 1348
HpyCH4III	ACNGT	5 cut(s)	692, 932, 1034, 1306, 1334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	672, 684, 772, 1236
HpyF3I	CTNAG	7 cut(s)	11, 171, 370, 467, 762, 992, 1114
Hsp92II	CATG	7 cut(s)	98, 290, 640, 721, 793, 1085, 1349
HspAI	GCGC	1 cut(s)	773
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	6 cut(s)	309, 354, 475, 949, 1090, 1428
LmnI	GCTCC	9 cut(s)	91, 106, 200, 208, 283, 584, 791, 1126, 1213
Lsp1109I	GCAGC	6 cut(s)	96, 99, 520, 950, 1214, 1397
LweI	GCATC	4 cut(s)	247, 476, 964, 1010
MaeI	CTAG	3 cut(s)	1310, 1392, 1425
MaeIII	GTNAC	3 cut(s)	84, 899, 1406
MalI	GATC	6 cut(s)	311, 356, 477, 951, 1092, 1430
MboI	GATC	6 cut(s)	309, 354, 475, 949, 1090, 1428
MboII	GAAGA	8 cut(s)	32, 140, 187, 266, 417, 420, 432, 1374
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	2 cut(s)	1090, 1428
MhlI	GDGCHC	2 cut(s)	205, 1210
MlyI	GAGTC	2 cut(s)	404, 872
MmeI	TCCRAC	1 cut(s)	897
MseI	TTAA	4 cut(s)	387, 534, 723, 779
MslI	CAYNNNNRTG	2 cut(s)	1102, 1350
MspI	CCGG	3 cut(s)	32, 63, 165
MspR9I	CCNGG	2 cut(s)	33, 342
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	672, 684, 772, 1236
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	6 cut(s)	309, 354, 475, 949, 1090, 1428
NlaIII	CATG	7 cut(s)	98, 290, 640, 721, 793, 1085, 1349
NlaIV	GGNNCC	2 cut(s)	61, 163
NmuCI	GTSAC	1 cut(s)	1406
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	4 cut(s)	377, 557, 1257, 1400
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	111, 114, 510, 677, 965, 1229, 1387
PleI	GAGTC	2 cut(s)	403, 871
PpsI	GAGTC	2 cut(s)	403, 871
PshAI	GACNNNNGTC	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	881
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	61, 163
PspPI	GGNCC	3 cut(s)	34, 118, 162
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	1090, 1428
RsaI	GTAC	4 cut(s)	645, 1076, 1308, 1336
RsaNI	GTAC	4 cut(s)	644, 1075, 1307, 1335
RseI	CAYNNNNRTG	2 cut(s)	1102, 1350
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	387, 534, 723, 779
SatI	GCNGC	7 cut(s)	110, 113, 509, 676, 964, 1228, 1386
Sau3AI	GATC	6 cut(s)	309, 354, 475, 949, 1090, 1428
Sau96I	GGNCC	3 cut(s)	34, 118, 162
SchI	GAGTC	2 cut(s)	404, 872
ScrFI	CCNGG	2 cut(s)	33, 342
SduI	GDGCHC	2 cut(s)	205, 1210
SfaNI	GCATC	4 cut(s)	247, 476, 964, 1010
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	118, 162
SmiMI	CAYNNNNRTG	2 cut(s)	1102, 1350
SsiI	CCGC	3 cut(s)	181, 676, 1230
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	3 cut(s)	1310, 1392, 1425
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	2 cut(s)	31, 340
TaaI	ACNGT	5 cut(s)	692, 932, 1034, 1306, 1334
TaqI	TCGA	1 cut(s)	958
TatI	WGTACW	2 cut(s)	1074, 1306
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	4 cut(s)	377, 557, 1257, 1400
Tru1I	TTAA	4 cut(s)	387, 534, 723, 779
Tru9I	TTAA	4 cut(s)	387, 534, 723, 779
TscAI	CASTG	3 cut(s)	378, 551, 935
TseFI	GTSAC	1 cut(s)	1406
TseI	GCWGC	6 cut(s)	109, 112, 508, 963, 1227, 1385
Tsp45I	GTSAC	1 cut(s)	1406
TspGWI	ACGGA	2 cut(s)	340, 599
TspRI	CASTG	3 cut(s)	378, 551, 935
Van91I	CCANNNNNTGG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	118, 162
XapI	RAATTY	3 cut(s)	74, 448, 809
XspI	CTAG	3 cut(s)	1310, 1392, 1425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.