Rh5AG018400

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
1319626 .. 1324128
4503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG018400.1

Sequence Viewer

Length: 1665 bp
ATGGGGTTTGTGGGATGGGATTTGAATGTATTGAGAATGCAAGTTCTGAGAGTGGAAGAAGGAAGGCCGGGCCAATATAGTGATAGAGACATTGGTTCCGGCACGAGAGAATTCTCGGAGTTACTGGAGCATGAAAAGGAGGAGCTACTGCAGGACCAATCAGAAGAGGATGAGAAGGACAATGGTCGCTTACAGGGGACCGGAACTAAGAAGAGGCGGTTTACTCCAGAAATTGGAGCTTCAAATGGAAAAAGAATTAGAAAAAAGCAACTTGCCTCAAACTATTATGAAGATGCAGATGAGTTAATGGATGAAATGGAGCATGACACAGAAATTGCCTTTATGATCAAGTCAAAAGCACGGAGAAGGGGAAGTCCTGGCCGTGGAAAGATCAACAGGAGTTGCTCAGTGGATTCAGGAGTTAAAGATGAGTCAAAGAATGCTACTTCTTATACTTCGTCTTCTTCACCACCATCTTCTCCGAATTCATCAGTTTCAGTTCTAAGATGGGATCGTGGTAGATGCACTTCAAGACACATGAAGGATAATGGAGATGTTTGTTTTAAGTGTCATCAGTGTATGCAAGAATCAAAAACTATTGTTTCTTGCTCCAAGTGTGAAAACAACTCTTATTGTATCCGTTGTATCAAGGAATGGTATCCTCACATGAAGGTACAGGATGTCAAGGAACTTTGCCCATTTTGCCGCAGAAATTGCAACTGTAATGCTTGCCTCCACTCAACTGGCATGATTAAGACACCAAAACGGGACATAAGCGACTATGAAAAGGCTCAGCATTTGGCGCATTTAATTCGCTCCATGCTTCCATTTCTGAAGGAATTTTCTGATGAACAAAAGGAGGAGATACAGATTGAAGCTAATATTCAAGGAGAGTCGCTTTCCAACATTATAATAGAACAAACCCTCTGTTACAATGATGAGCGTGTCTATTGCAACCACTGTGCAACTTCAATTGTTGATCTGCATCGAAGCTGCCCTAAATGTCTATATGAACTATGTCTAAGTTGTTGTAGAGAAATTAGGCAGGGATGCCTTTTAGACCGTGCAGAGGTGAAGTTTCAATATAGGAATATGGGTTGCGAGTACATTCATGGTGGAGATCCATCACCTGAATGTTGTTCCTTAGAAGCTCCAGACAATCATATTGAGCCTTTGACTGGGTGGAATGAGCCTTTGACTGGGTGGAGTGCAAATGATGATAATAGTATTACTTGTGCTCCAAAGGAAATGGGTGGCTGCGGTGAGAGCAACTTGGCTCTGAAGCGAATCCTTCCTTGTGATTGGATTGCAAGTTTAGAAGCAAAAGCCAAAACTGTTAATATTTTGACACATACAGCAGAAATAAAGCTAGGTGATGAGCAGAAATCGGCAATTTCAATGCTAAAAGAATTACATAGAGCCCAAGATGAGAGAGAGCTTCAGAATTGGGTGAATTCTCAGTCTGGACAGTCTGGAGCACAGATAGGGAATGGTGAAGAAATCATAGAAAAGAATTACAATAGGGAATTGAAGGTTCCAGAAGATGATGCAGATGGGCCCACACTTTCTGGTTCTCCCTGCACGGAAGCAATAAAGAAAATGATACTATATGCGGTCGACCAAGCTGTTAAGGATTTGGAAGCCTTGGTAGCAACTCAAGTTTGA

Protein Analysis

554

Amino Acids

62.49

Weight (kDa)

5.5

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 233
AccI GTMKAC 1 cut(s) 1617
AciI CCGC 4 cut(s) 217, 706, 1260, 1613
AclWI GGATC 2 cut(s) 519, 1115
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 4 cut(s) 110, 484, 839, 1453
AcuI CTGAAG 3 cut(s) 854, 1301, 1424
AfaI GTAC 2 cut(s) 675, 1106
AfiI CCNNNNNNNGG 5 cut(s) 233, 383, 1069, 1178, 1199
AgsI TTSAA 9 cut(s) 25, 243, 531, 875, 887, 972, 1082, 1398, 1531
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 8 cut(s) 145, 239, 878, 993, 1151, 1369, 1438, 1625
AluI AGCT 8 cut(s) 145, 239, 878, 993, 1151, 1369, 1438, 1625
Alw21I GWGCWC 2 cut(s) 1240, 1480
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 2 cut(s) 519, 1115
AoxI GGCC 4 cut(s) 65, 70, 379, 1556
ApaI GGGCCC 1 cut(s) 1560
ApeKI GCWGC 2 cut(s) 993, 1257
ApoI RAATTY 4 cut(s) 110, 484, 839, 1453
AspLEI GCGC 1 cut(s) 805
AspS9I GGNCC 5 cut(s) 70, 154, 198, 1556, 1557
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 7 cut(s) 459, 1084, 1119, 1274, 1385, 1462, 1505
AvaII GGWCC 2 cut(s) 154, 198
BaeGI GKGCMC 1 cut(s) 1560
BanII GRGCYC 2 cut(s) 1423, 1560
BarI GAAGNNNNNNTAC 2 cut(s) 511, 543
BauI CACGAG 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 2 cut(s) 1240, 1480
BbvI GCAGC 2 cut(s) 980, 1244
BccI CCATC 5 cut(s) 9, 481, 501, 1132, 1547
BceAI ACGGC 1 cut(s) 366
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 1 cut(s) 378
BciVI GTATCC 2 cut(s) 647, 669
BclI TGATCA 1 cut(s) 345
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 1370
BfmI CTRYAG 1 cut(s) 149
BfuI GTATCC 2 cut(s) 647, 669
BisI GCNGC 3 cut(s) 706, 994, 1258
BlpI GCTNAGC 1 cut(s) 792
BlsI GCNGC 3 cut(s) 707, 995, 1259
Bme1390I CCNGG 2 cut(s) 69, 378
Bme18I GGWCC 2 cut(s) 154, 198
BmgT120I GGNCC 5 cut(s) 70, 154, 198, 1556, 1557
BmiI GGNNCC 4 cut(s) 97, 199, 1536, 1558
BmrFI CCNGG 2 cut(s) 69, 378
BmrI ACTGGG 2 cut(s) 1188, 1209
BmsI GCATC 5 cut(s) 283, 512, 994, 1040, 1537
BmuI ACTGGG 2 cut(s) 1188, 1209
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 4 cut(s) 146, 210, 1137, 1494
Bpu1102I GCTNAGC 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 1641
BpuMI CCSGG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 984
BsaJI CCNNGG 2 cut(s) 382, 1644
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 1222, 1252
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 383, 1069, 1178, 1199
Bse1I ACTGG 4 cut(s) 129, 748, 1183, 1204
Bse8I GATNNNNATC 1 cut(s) 984
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 382, 1644
BseGI GGATG 5 cut(s) 20, 175, 316, 685, 1055
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 5 cut(s) 233, 383, 1069, 1178, 1199
BseMII CTCAG 4 cut(s) 38, 420, 806, 1472
BseNI ACTGG 4 cut(s) 129, 748, 1183, 1204
BseRI GAGGAG 2 cut(s) 155, 875
BseSI GKGCMC 1 cut(s) 1560
BseXI GCAGC 2 cut(s) 980, 1244
BsgI GTGCAG 2 cut(s) 1086, 1564
Bsh1285I CGRYCG 1 cut(s) 1617
BshFI GGCC 4 cut(s) 67, 72, 381, 1558
BsiEI CGRYCG 1 cut(s) 1617
BsiHKAI GWGCWC 2 cut(s) 1240, 1480
BsiSI CCGG 3 cut(s) 68, 99, 201
BslFI GGGAC 2 cut(s) 211, 782
BslI CCNNNNNNNGG 5 cut(s) 233, 383, 1069, 1178, 1199
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 211, 782
BsmI GAATGC 2 cut(s) 42, 445
BsnI GGCC 4 cut(s) 67, 72, 381, 1558
Bsp120I GGGCCC 1 cut(s) 1556
Bsp1286I GDGCHC 4 cut(s) 1240, 1423, 1480, 1560
Bsp143I GATC 5 cut(s) 345, 390, 511, 979, 1120
Bsp1720I GCTNAGC 1 cut(s) 792
BspACI CCGC 4 cut(s) 217, 706, 1260, 1613
BspANI GGCC 4 cut(s) 67, 72, 381, 1558
BspCNI CTCAG 4 cut(s) 39, 419, 805, 1471
BspLI GGNNCC 4 cut(s) 97, 199, 1536, 1558
BspMAI CTGCAG 1 cut(s) 153
BspPI GGATC 2 cut(s) 519, 1115
BsrI ACTGG 4 cut(s) 129, 748, 1183, 1204
BssECI CCNNGG 2 cut(s) 382, 1644
BssMI GATC 5 cut(s) 345, 390, 511, 979, 1120
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 1644
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 5 cut(s) 722, 962, 1064, 1336, 1470
Bst6I CTCTTC 2 cut(s) 159, 206
BstAPI GCANNNNNTGC 1 cut(s) 714
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 8 cut(s) 47, 207, 406, 503, 792, 1022, 1144, 1458
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 5 cut(s) 20, 175, 316, 685, 1055
BstHHI GCGC 1 cut(s) 805
BstKTI GATC 5 cut(s) 348, 393, 514, 982, 1123
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 5 cut(s) 345, 390, 511, 979, 1120
BstMCI CGRYCG 1 cut(s) 1617
BstMWI GCNNNNNNNGC 5 cut(s) 702, 714, 802, 1266, 1649
BstNI CCWGG 1 cut(s) 378
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 2 cut(s) 67, 376
BstSFI CTRYAG 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 1560
BstV1I GCAGC 2 cut(s) 980, 1244
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 1120
BstXI CCANNNNNNTGG 1 cut(s) 743
BstYI RGATCY 1 cut(s) 1120
BsuI GTATCC 2 cut(s) 647, 669
BsuRI GGCC 4 cut(s) 67, 72, 381, 1558
BtgI CCRYGG 1 cut(s) 382
BtsCI GGATG 5 cut(s) 20, 175, 316, 685, 1055
BtsIMutI CAGTG 3 cut(s) 414, 581, 958
Cac8I GCNNGC 1 cut(s) 730
CfoI GCGC 1 cut(s) 805
Cfr13I GGNCC 5 cut(s) 70, 154, 198, 1556, 1557
Csp6I GTAC 2 cut(s) 674, 1105
CviAII CATG 7 cut(s) 131, 323, 538, 667, 748, 820, 1112
CviQI GTAC 2 cut(s) 674, 1105
DdeI CTNAG 8 cut(s) 47, 207, 406, 503, 792, 1022, 1144, 1458
DpnI GATC 5 cut(s) 347, 392, 513, 981, 1122
DpnII GATC 5 cut(s) 345, 390, 511, 979, 1120
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 2 cut(s) 159, 206
EarI CTCTTC 2 cut(s) 159, 206
Eco130I CCWWGG 1 cut(s) 1644
Eco24I GRGCYC 2 cut(s) 1423, 1560
Eco47I GGWCC 2 cut(s) 154, 198
Eco57I CTGAAG 3 cut(s) 854, 1301, 1424
EcoRI GAATTC 3 cut(s) 110, 484, 1453
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 1644
EcoT38I GRGCYC 2 cut(s) 1423, 1560
ErhI CCWWGG 1 cut(s) 1644
FaeI CATG 7 cut(s) 134, 326, 541, 670, 751, 823, 1115
FaqI GGGAC 2 cut(s) 211, 782
FatI CATG 7 cut(s) 130, 322, 537, 666, 747, 819, 1111
FbaI TGATCA 1 cut(s) 345
FblI GTMKAC 1 cut(s) 1617
Fnu4HI GCNGC 3 cut(s) 706, 994, 1258
FokI GGATG 5 cut(s) 27, 182, 323, 692, 1062
FriOI GRGCYC 2 cut(s) 1423, 1560
Fsp4HI GCNGC 3 cut(s) 706, 994, 1258
FspBI CTAG 1 cut(s) 1370
GlaI GCGC 1 cut(s) 804
GluI GCNGC 3 cut(s) 706, 994, 1258
GsuI CTGGAG 4 cut(s) 146, 210, 1137, 1494
HaeIII GGCC 4 cut(s) 67, 72, 381, 1558
HapII CCGG 3 cut(s) 68, 99, 201
HhaI GCGC 1 cut(s) 805
Hin1II CATG 7 cut(s) 134, 326, 541, 670, 751, 823, 1115
Hin6I GCGC 1 cut(s) 803
HinP1I GCGC 1 cut(s) 803
HincII GTYRAC 1 cut(s) 1618
HindII GTYRAC 1 cut(s) 1618
HinfI GANTC 5 cut(s) 413, 431, 587, 893, 1287
HpaII CCGG 3 cut(s) 68, 99, 201
HphI GGTGA 7 cut(s) 459, 1084, 1119, 1274, 1385, 1462, 1505
Hpy166II GTNNAC 2 cut(s) 222, 1618
Hpy188I TCNGA 8 cut(s) 48, 118, 163, 483, 834, 847, 1281, 1443
Hpy188III TCNNGA 7 cut(s) 227, 417, 531, 1154, 1464, 1473, 1538
Hpy8I GTNNAC 2 cut(s) 222, 1618
HpyAV CCTTC 9 cut(s) 53, 57, 169, 360, 535, 664, 829, 1301, 1525
HpyCH4III ACNGT 5 cut(s) 722, 962, 1064, 1336, 1470
HpyF10VI GCNNNNNNNGC 5 cut(s) 702, 714, 802, 1266, 1649
HpyF3I CTNAG 8 cut(s) 47, 207, 406, 503, 792, 1022, 1144, 1458
Hsp92II CATG 7 cut(s) 134, 326, 541, 670, 751, 823, 1115
HspAI GCGC 1 cut(s) 803
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 5 cut(s) 345, 390, 511, 979, 1120
LmnI GCTCC 9 cut(s) 127, 142, 236, 319, 614, 821, 1156, 1243, 1475
Lsp1109I GCAGC 2 cut(s) 980, 1244
LweI GCATC 5 cut(s) 283, 512, 994, 1040, 1537
MaeI CTAG 1 cut(s) 1370
MaeIII GTNAC 2 cut(s) 120, 929
MalI GATC 5 cut(s) 347, 392, 513, 981, 1122
MboI GATC 5 cut(s) 345, 390, 511, 979, 1120
MboII GAAGA 9 cut(s) 68, 176, 223, 302, 453, 456, 468, 1508, 1553
MfeI CAATTG 1 cut(s) 972
MflI RGATCY 1 cut(s) 1120
MhlI GDGCHC 4 cut(s) 1240, 1423, 1480, 1560
MlyI GAGTC 2 cut(s) 440, 902
MmeI TCCRAC 1 cut(s) 927
MnlI CCTC 9 cut(s) 133, 160, 207, 286, 672, 743, 853, 935, 1063
MseI TTAA 7 cut(s) 305, 423, 564, 753, 809, 1338, 1629
MslI CAYNNNNRTG 1 cut(s) 1132
MspI CCGG 3 cut(s) 68, 99, 201
MspR9I CCNGG 2 cut(s) 69, 378
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 2 cut(s) 42, 445
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 5 cut(s) 702, 714, 802, 1266, 1649
NciI CCSGG 1 cut(s) 69
NdeII GATC 5 cut(s) 345, 390, 511, 979, 1120
NlaIII CATG 7 cut(s) 134, 326, 541, 670, 751, 823, 1115
NlaIV GGNNCC 4 cut(s) 97, 199, 1536, 1558
PctI GAATGC 2 cut(s) 42, 445
PfeI GAWTC 3 cut(s) 413, 587, 1287
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 3 cut(s) 707, 995, 1259
PleI GAGTC 2 cut(s) 439, 901
PpsI GAGTC 2 cut(s) 439, 901
PshAI GACNNNNGTC 1 cut(s) 183
PsiI TTATAA 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 4 cut(s) 97, 199, 1536, 1558
PspOMI GGGCCC 1 cut(s) 1556
PspPI GGNCC 5 cut(s) 70, 154, 198, 1556, 1557
PstI CTGCAG 1 cut(s) 153
PsuI RGATCY 1 cut(s) 1120
RsaI GTAC 2 cut(s) 675, 1106
RsaNI GTAC 2 cut(s) 674, 1105
RseI CAYNNNNRTG 1 cut(s) 1132
SalI GTCGAC 1 cut(s) 1616
SaqAI TTAA 7 cut(s) 305, 423, 564, 753, 809, 1338, 1629
SatI GCNGC 3 cut(s) 706, 994, 1258
Sau3AI GATC 5 cut(s) 345, 390, 511, 979, 1120
Sau96I GGNCC 5 cut(s) 70, 154, 198, 1556, 1557
SchI GAGTC 2 cut(s) 440, 902
ScrFI CCNGG 2 cut(s) 69, 378
SduI GDGCHC 4 cut(s) 1240, 1423, 1480, 1560
SfaNI GCATC 5 cut(s) 283, 512, 994, 1040, 1537
SfcI CTRYAG 1 cut(s) 149
SinI GGWCC 2 cut(s) 154, 198
SmiMI CAYNNNNRTG 1 cut(s) 1132
SmlI CTYRAG 1 cut(s) 1656
SmoI CTYRAG 1 cut(s) 1656
SsiI CCGC 4 cut(s) 217, 706, 1260, 1613
SspI AATATT 2 cut(s) 883, 1342
SspMI CTAG 1 cut(s) 1370
StyD4I CCNGG 2 cut(s) 67, 376
StyI CCWWGG 1 cut(s) 1644
TaaI ACNGT 5 cut(s) 722, 962, 1064, 1336, 1470
TaqI TCGA 2 cut(s) 988, 1617
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 1 cut(s) 708
TfiI GAWTC 3 cut(s) 413, 587, 1287
Tru1I TTAA 7 cut(s) 305, 423, 564, 753, 809, 1338, 1629
Tru9I TTAA 7 cut(s) 305, 423, 564, 753, 809, 1338, 1629
TscAI CASTG 3 cut(s) 414, 581, 965
TseI GCWGC 2 cut(s) 993, 1257
TspGWI ACGGA 3 cut(s) 376, 629, 1598
TspRI CASTG 3 cut(s) 414, 581, 965
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 154, 198
XapI RAATTY 4 cut(s) 110, 484, 839, 1453
XmiI GTMKAC 1 cut(s) 1617
XspI CTAG 1 cut(s) 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.