Rmu_co8365027.1_g000001

CST complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8365027.1
OG0006351
Physical Location & Seq
Forward (+)
1 .. 982
982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8365027.1_g000001.1.cds

Sequence Viewer

Length: 982 bp
cgccgccgctcctcgatgctcctacaacacttgcttccaattctcagacaactcggccgcctcgatctgctgcgacgttcttgatttcgatgctcggattctcgacaagagaatcaatgttctcgcttggaatttcattccattcaaacgtggcggtgggttcttggagattatcagatgggggtttcaggattcagttgctggaatttggccctgttcgaatatcatttctatggagttaggctcttccactgctaatgctaatgaagacagttccaaggctcgtcatggtgtgttcggcgcactggagtcggttagccctttctccattgtttcatgtagaacaggtgatagcaattcgaaaagcaacaaggctttggattcaggccccgcgacaagcctccgcggcttcttagtccaatttatggtttgtgagtgtagatcatgcagttcaaaggagtcaatcatggttttgaaggattcaattcaagaaagagatactcattcttttaccaaaccaatgtttgtgtattgttgcggttctgcttcatcctggcatcctgtatttacgaaacttgtgggaaatattgttgctatatcaggcttgaaaaagaagttggtttttatagggaaggaagagtctaaagtaatgtgtgtaactacaggaagttctgccttgcatttgagcagattgtccaagaaatggacgccgaaagttacagtaggtagaaagggaaatggggaagttggttcatatagagggagagttaaaggtgtgtatatgcaaggaatggttgtggaattggacaatgaggtgtggcttttgttaactgatcaactgcttactccaccacatagtcttagggctggtgctctcgtaagtcttatggcttttattaatctggccttcaagtttttccctctactaccttttgaagtcttctttcaatttggcttttttgttgttgctaggtttctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTC1_2

Protein Analysis

326

Amino Acids

35.85

Weight (kDa)

9.07

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 425, 703
AccBSI CCGCTC 1 cut(s) 9
AccII CGCG 2 cut(s) 393, 406
AciI CCGC 8 cut(s) 4, 7, 58, 154, 391, 404, 406, 538
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 131, 205
AcyI GRCGYC 1 cut(s) 708
AfiI CCNNNNNNNGG 2 cut(s) 425, 703
AgsI TTSAA 9 cut(s) 146, 454, 476, 484, 489, 608, 911, 936, 948
AjnI CCWGG 1 cut(s) 552
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
Alw21I GWGCWC 1 cut(s) 875
AlwNI CAGNNNCTG 1 cut(s) 201
AoxI GGCC 4 cut(s) 55, 210, 386, 904
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 2 cut(s) 131, 205
AseI ATTAAT 1 cut(s) 898
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 2 cut(s) 211, 387
AsuHPI GGTGA 1 cut(s) 360
AsuII TTCGAA 2 cut(s) 219, 360
BbsI GAAGAC 2 cut(s) 274, 932
Bbv12I GWGCWC 1 cut(s) 875
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 1 cut(s) 554
BclI TGATCA 1 cut(s) 833
BfaI CTAG 1 cut(s) 970
BfmI CTRYAG 1 cut(s) 661
BglI GCCNNNNNGGC 1 cut(s) 406
BisI GCNGC 5 cut(s) 4, 7, 58, 71, 407
BlsI GCNGC 5 cut(s) 5, 8, 59, 72, 408
Bme1390I CCNGG 1 cut(s) 554
BmgT120I GGNCC 2 cut(s) 211, 387
BmiI GGNNCC 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 3 cut(s) 6, 80, 566
BpiI GAAGAC 2 cut(s) 274, 932
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 327
Bpu14I TTCGAA 2 cut(s) 219, 360
BsaHI GRCGYC 1 cut(s) 708
BsaJI CCNNGG 2 cut(s) 277, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 703
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 2 cut(s) 277, 404
BseGI GGATG 2 cut(s) 549, 557
BseLI CCNNNNNNNGG 2 cut(s) 425, 703
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 310
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 57
Bsh1236I CGCG 2 cut(s) 393, 406
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 4 cut(s) 57, 212, 388, 906
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 875
BslI CCNNNNNNNGG 2 cut(s) 425, 703
BsnI GGCC 4 cut(s) 57, 212, 388, 906
Bsp119I TTCGAA 2 cut(s) 219, 360
Bsp1286I GDGCHC 1 cut(s) 875
Bsp143I GATC 3 cut(s) 64, 441, 833
BspACI CCGC 8 cut(s) 4, 7, 58, 154, 391, 404, 406, 538
BspANI GGCC 4 cut(s) 57, 212, 388, 906
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 393, 406
BspLI GGNNCC 1 cut(s) 389
BspQI GCTCTTC 1 cut(s) 251
BspT104I TTCGAA 2 cut(s) 219, 360
BsrBI CCGCTC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 277, 404
BssMI GATC 3 cut(s) 64, 441, 833
BssNI GRCGYC 1 cut(s) 708
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 2 cut(s) 273, 722
Bst6I CTCTTC 2 cut(s) 251, 631
BstACI GRCGYC 1 cut(s) 708
BstBI TTCGAA 2 cut(s) 219, 360
BstDEI CTNAG 3 cut(s) 44, 413, 861
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 549, 557
BstFNI CGCG 2 cut(s) 393, 406
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 67, 444, 836
BstMBI GATC 3 cut(s) 64, 441, 833
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 552
BstSFI CTRYAG 1 cut(s) 661
BstUI CGCG 2 cut(s) 393, 406
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 2 cut(s) 274, 932
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 4 cut(s) 57, 212, 388, 906
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 2 cut(s) 549, 557
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 2 cut(s) 250, 303
CaiI CAGNNNCTG 1 cut(s) 201
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 211, 387
Cfr42I CCGCGG 1 cut(s) 407
CseI GACGC 1 cut(s) 716
CviAII CATG 4 cut(s) 288, 337, 445, 467
DdeI CTNAG 3 cut(s) 44, 413, 861
DpnI GATC 3 cut(s) 66, 443, 835
DpnII GATC 3 cut(s) 64, 441, 833
EaeI YGGCCR 1 cut(s) 55
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 251, 631
EarI CTCTTC 2 cut(s) 251, 631
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 277
Eco52I CGGCCG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 4 cut(s) 291, 340, 448, 470
FatI CATG 4 cut(s) 287, 336, 444, 466
FauI CCCGC 1 cut(s) 398
FbaI TGATCA 1 cut(s) 833
Fnu4HI GCNGC 5 cut(s) 4, 7, 58, 71, 407
FokI GGATG 2 cut(s) 536, 544
Fsp4HI GCNGC 5 cut(s) 4, 7, 58, 71, 407
FspBI CTAG 1 cut(s) 970
GlaI GCGC 1 cut(s) 302
GluI GCNGC 5 cut(s) 4, 7, 58, 71, 407
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 4 cut(s) 57, 212, 388, 906
HgaI GACGC 1 cut(s) 716
HhaI GCGC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 708
Hin1II CATG 4 cut(s) 291, 340, 448, 470
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HinfI GANTC 8 cut(s) 98, 112, 192, 309, 381, 459, 480, 639
HpaI GTTAAC 1 cut(s) 829
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 829
Hpy188I TCNGA 3 cut(s) 47, 97, 177
Hpy188III TCNNGA 4 cut(s) 81, 102, 189, 489
Hpy8I GTNNAC 1 cut(s) 829
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 470, 626, 917
HpyCH4III ACNGT 2 cut(s) 273, 722
HpyCH4IV ACGT 2 cut(s) 76, 149
HpyCH4V TGCA 3 cut(s) 448, 680, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 3 cut(s) 44, 413, 861
HpySE526I ACGT 2 cut(s) 76, 149
Hsp92I GRCGYC 1 cut(s) 708
Hsp92II CATG 4 cut(s) 291, 340, 448, 470
HspAI GCGC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 833
KspAI GTTAAC 1 cut(s) 829
KspI CCGCGG 1 cut(s) 407
Kzo9I GATC 3 cut(s) 64, 441, 833
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 14, 24
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 3 cut(s) 6, 80, 566
MaeI CTAG 1 cut(s) 970
MaeII ACGT 2 cut(s) 76, 149
MaeIII GTNAC 2 cut(s) 656, 716
MalI GATC 3 cut(s) 66, 443, 835
MbiI CCGCTC 1 cut(s) 9
MboI GATC 3 cut(s) 64, 441, 833
MboII GAAGA 4 cut(s) 238, 279, 648, 932
MhlI GDGCHC 1 cut(s) 875
MluCI AATT 8 cut(s) 39, 131, 205, 356, 420, 484, 801, 948
MlyI GAGTC 3 cut(s) 318, 468, 648
MnlI CCTC 6 cut(s) 22, 71, 411, 753, 806, 931
MseI TTAA 3 cut(s) 769, 828, 898
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 554
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 2 cut(s) 393, 406
MwoI GCNNNNNNNGC 1 cut(s) 406
NdeII GATC 3 cut(s) 64, 441, 833
NlaIII CATG 4 cut(s) 291, 340, 448, 470
NlaIV GGNNCC 1 cut(s) 389
NmeAIII GCCGAG 1 cut(s) 33
NspV TTCGAA 2 cut(s) 219, 360
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 5 cut(s) 98, 112, 192, 381, 480
PflMI CCANNNNNTGG 2 cut(s) 425, 703
PkrI GCNGC 5 cut(s) 5, 8, 59, 72, 408
PleI GAGTC 3 cut(s) 317, 467, 647
PpsI GAGTC 3 cut(s) 317, 467, 647
PshBI ATTAAT 1 cut(s) 898
Psp6I CCWGG 1 cut(s) 552
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 2 cut(s) 211, 387
PstNI CAGNNNCTG 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 231
SacII CCGCGG 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 3 cut(s) 769, 828, 898
SatI GCNGC 5 cut(s) 4, 7, 58, 71, 407
Sau3AI GATC 3 cut(s) 64, 441, 833
Sau96I GGNCC 2 cut(s) 211, 387
SchI GAGTC 3 cut(s) 318, 468, 648
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 1 cut(s) 875
SetI ASST 8 cut(s) 79, 152, 350, 728, 776, 817, 932, 975
SfaNI GCATC 3 cut(s) 6, 80, 566
SfcI CTRYAG 1 cut(s) 661
Sfr303I CCGCGG 1 cut(s) 407
SfuI TTCGAA 2 cut(s) 219, 360
SgrBI CCGCGG 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 8 cut(s) 39, 131, 205, 356, 420, 484, 801, 948
SsiI CCGC 8 cut(s) 4, 7, 58, 154, 391, 404, 406, 538
SspI AATATT 1 cut(s) 587
SspMI CTAG 1 cut(s) 970
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 273, 722
TaiI ACGT 2 cut(s) 79, 152
TaqI TCGA 6 cut(s) 14, 63, 88, 103, 219, 360
TasI AATT 8 cut(s) 39, 131, 205, 356, 420, 484, 801, 948
TauI GCSGC 4 cut(s) 6, 9, 60, 409
TfiI GAWTC 5 cut(s) 98, 112, 192, 381, 480
Tru1I TTAA 3 cut(s) 769, 828, 898
Tru9I TTAA 3 cut(s) 769, 828, 898
TscAI CASTG 2 cut(s) 257, 310
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 5 cut(s) 125, 280, 325, 538, 742
TspRI CASTG 2 cut(s) 257, 310
Van91I CCANNNNNTGG 2 cut(s) 425, 703
VspI ATTAAT 1 cut(s) 898
XapI RAATTY 2 cut(s) 131, 205
XspI CTAG 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.