Rmu_sc0000144.1_g000045

CST complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
Physical Location & Seq
Reverse (-)
201719 .. 204231
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000144.1_g000045.1.cds

Sequence Viewer

Length: 1812 bp
atggaaagtgtgagagtcttgacaatcgcagacttactccaacgcggccgtttcctcaccggaacctcctctttcgttaccccttcatttgctccaaaatcaaacccctccatttctcccatcccctcaaatcctaaccctaatgccaccactaaggttctcccctctctcgaccgctttgccctcatcatcggaactataacactccccagcgccacctccgcctccgcttcaatcgccgccgctcctcgatgctcctacaacacttgcttccaattctcagacaactcggccgcctcgatctgctgcgacgttcttgatttcgatgctcggattctcgacaagagaatcaatgttctcgcttggaatttcattccattcaaacgtggcggtgggttcttggagattatcagatgggggtttcaggattcagttgctggaatttggccctgttcgaatatcatttctatggagttaggctcttccactgctaatgctaatgaagacagttccaaggctcgtcatggtgtgttcggcgcactggagtcggttagccctttctccattgtttcatgtagaacaggtgatagcaattcgaaaagcaacaaggctttggattcaggccccgcgacaagcctccgcggcttcttagtccaatttatggtttgtgagtgtagatcatgcagttcaaaggagtcaatcatggttttgaaggattcaattcaagaaagagatactcattcttttaccaaaccaatgtttgtgtattgttgcggttctgcttcatcctggcatcctgtatttacgaaacttgtgggaaatattgttgctatatcaggcttgaaaaagaagttggtttttatagggaaggaagagtctaaagtaatgtgtgtaactacaggaagttctgccttgcatttgagcagattgtccaagaaatggacgccgaaagttacagtaggtagaaagggaaatggggaagttggttcatatagagggagagttaaaggtgtgtatatgcaaggaatggttgtggaattggacaatgaggtgtggcttttgttaactgatcaactgcttactccaccacatagtcttagggctggtgctctcgtaagttttatggcttttattaatctggccttcaagtttttccctctactaccttttgaagtcttctttcaatttggcttttttgttgttgctaggaccaatgtaattgtggaatccttctctccaatagaaactcggtgtcatatagcctcacaatcacagagttccttggggaagttcatcgagtccttagcattttcttccagattatgggtattgctggttgcctcgtatttccggaaaaagtttgctggtatcttatctgagaaggaaattttgggctccaaacatttaatttggacggttgcaaggtgctaccagaagggaggattagttgagatgtttgctagttcacagatgccttcgtcaaagcatcaaactcggccgggagtattcatggaattttgcaagcatgattcctgtgcctgtggttgtgagccatacatagataatctgactctggtgatccccttgtcttttttcatatgtcactgtgagtccacatggatgagggcactgaacctggaaggtaacagtagacaattgcatgatgacaaacggtacagccgtcaattatgtgaagggagatcttatgttcagtctattagaaagatcttttcaagtcaagatataggcataactttggttggaagtttgaaggttagtggtcttgttaatggttatctattttctggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

603

Amino Acids

66.31

Weight (kDa)

9.17

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 661, 939, 1323
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 1651
AccII CGCG 3 cut(s) 45, 629, 642
AccIII TCCGGA 1 cut(s) 1350
AclWI GGATC 1 cut(s) 1573
AcoI YGGCCR 3 cut(s) 46, 291, 1496
AcsI RAATTY 4 cut(s) 367, 441, 1386, 1514
AcyI GRCGYC 1 cut(s) 944
AfaI GTAC 1 cut(s) 1676
AfiI CCNNNNNNNGG 3 cut(s) 661, 939, 1323
AjnI CCWGG 2 cut(s) 788, 1635
AjuI GAANNNNNNNTTGG 4 cut(s) 836, 868, 1373, 1405
Alw21I GWGCWC 1 cut(s) 1111
AlwI GGATC 1 cut(s) 1573
AlwNI CAGNNNCTG 1 cut(s) 437
Aor13HI TCCGGA 1 cut(s) 1350
AoxI GGCC 6 cut(s) 46, 291, 446, 622, 1140, 1496
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 4 cut(s) 367, 441, 1386, 1514
AseI ATTAAT 1 cut(s) 1134
AspLEI GCGC 2 cut(s) 215, 539
AspS9I GGNCC 3 cut(s) 447, 623, 1209
AsuC2I CCSGG 1 cut(s) 1500
AsuHPI GGTGA 3 cut(s) 49, 596, 1588
AsuII TTCGAA 2 cut(s) 455, 596
AvaII GGWCC 1 cut(s) 1209
BaeGI GKGCMC 1 cut(s) 1630
BaeI ACNNNNGTAYC 2 cut(s) 1666, 1699
BanII GRGCYC 1 cut(s) 1397
BbsI GAAGAC 2 cut(s) 510, 1168
Bbv12I GWGCWC 1 cut(s) 1111
BbvI GCAGC 1 cut(s) 293
BccI CCATC 2 cut(s) 128, 408
BceAI ACGGC 2 cut(s) 33, 1665
BcgI CGANNNNNNTGC 6 cut(s) 161, 195, 528, 562, 1475, 1509
BciT130I CCWGG 2 cut(s) 790, 1637
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 1 cut(s) 1500
BfaI CTAG 2 cut(s) 1206, 1461
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 642
BglII AGATCT 2 cut(s) 1700, 1725
BisI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
BlsI GCNGC 6 cut(s) 47, 241, 244, 295, 308, 644
Bme1390I CCNGG 3 cut(s) 790, 1500, 1637
Bme18I GGWCC 1 cut(s) 1209
BmgT120I GGNCC 3 cut(s) 447, 623, 1209
BmiI GGNNCC 3 cut(s) 64, 625, 1396
BmrFI CCNGG 3 cut(s) 790, 1500, 1637
BmsI GCATC 5 cut(s) 242, 316, 802, 1461, 1495
BpiI GAAGAC 2 cut(s) 510, 1168
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 1 cut(s) 563
Bpu10I CCTNAGC 1 cut(s) 1303
Bpu14I TTCGAA 2 cut(s) 455, 596
BpuMI CCSGG 1 cut(s) 1500
BsaHI GRCGYC 1 cut(s) 944
BsaJI CCNNGG 3 cut(s) 513, 640, 1281
BsaWI WCCGGW 2 cut(s) 59, 1350
BsaXI ACNNNNNCTCC 2 cut(s) 1431, 1461
Bsc4I CCNNNNNNNGG 3 cut(s) 661, 939, 1323
Bse1I ACTGG 1 cut(s) 546
BseAI TCCGGA 1 cut(s) 1350
BseBI CCWGG 2 cut(s) 790, 1637
BseDI CCNNGG 3 cut(s) 513, 640, 1281
BseGI GGATG 4 cut(s) 120, 785, 793, 1626
BseLI CCNNNNNNNGG 3 cut(s) 661, 939, 1323
BseMII CTCAG 2 cut(s) 294, 1368
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 2 cut(s) 58, 237
BseSI GKGCMC 1 cut(s) 1630
BseX3I CGGCCG 3 cut(s) 46, 291, 1496
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 3 cut(s) 45, 629, 642
Bsh1285I CGRYCG 4 cut(s) 49, 175, 294, 1499
BshFI GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
BsiEI CGRYCG 4 cut(s) 49, 175, 294, 1499
BsiHKAI GWGCWC 1 cut(s) 1111
BsiSI CCGG 3 cut(s) 60, 1351, 1499
BslI CCNNNNNNNGG 3 cut(s) 661, 939, 1323
BsnI GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
Bsp119I TTCGAA 2 cut(s) 455, 596
Bsp1286I GDGCHC 3 cut(s) 1111, 1397, 1630
Bsp13I TCCGGA 1 cut(s) 1350
Bsp143I GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
BspANI GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
BspCNI CTCAG 2 cut(s) 293, 1369
BspEI TCCGGA 1 cut(s) 1350
BspFNI CGCG 3 cut(s) 45, 629, 642
BspLI GGNNCC 3 cut(s) 64, 625, 1396
BspPI GGATC 1 cut(s) 1573
BspQI GCTCTTC 1 cut(s) 487
BspT104I TTCGAA 2 cut(s) 455, 596
BsrBI CCGCTC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 513, 640, 1281
BssMI GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
BssNI GRCGYC 1 cut(s) 944
BssT1I CCWWGG 2 cut(s) 513, 1281
Bst2UI CCWGG 2 cut(s) 790, 1637
Bst4CI ACNGT 6 cut(s) 509, 958, 1417, 1607, 1649, 1674
Bst6I CTCTTC 2 cut(s) 487, 867
BstACI GRCGYC 1 cut(s) 944
BstBI TTCGAA 2 cut(s) 455, 596
BstC8I GCNNGC 1 cut(s) 1523
BstDEI CTNAG 6 cut(s) 153, 280, 649, 1097, 1303, 1377
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 4 cut(s) 120, 785, 793, 1626
BstFNI CGCG 3 cut(s) 45, 629, 642
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 539
BstKTI GATC 6 cut(s) 303, 680, 1072, 1581, 1703, 1728
BstMBI GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
BstMCI CGRYCG 4 cut(s) 49, 175, 294, 1499
BstMWI GCNNNNNNNGC 3 cut(s) 221, 236, 642
BstNI CCWGG 2 cut(s) 790, 1637
BstSCI CCNGG 3 cut(s) 788, 1498, 1635
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 1630
BstUI CGCG 3 cut(s) 45, 629, 642
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 510, 1168
BstX2I RGATCY 2 cut(s) 1700, 1725
BstYI RGATCY 2 cut(s) 1700, 1725
BstZI CGGCCG 3 cut(s) 46, 291, 1496
BsuRI GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 4 cut(s) 120, 785, 793, 1626
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 4 cut(s) 486, 539, 1603, 1628
Cac8I GCNNGC 1 cut(s) 1523
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 2 cut(s) 215, 539
Cfr13I GGNCC 3 cut(s) 447, 623, 1209
Cfr42I CCGCGG 1 cut(s) 643
CseI GACGC 1 cut(s) 952
Csp6I GTAC 1 cut(s) 1675
CviAII CATG 8 cut(s) 524, 573, 681, 703, 1510, 1526, 1617, 1661
CviQI GTAC 1 cut(s) 1675
DdeI CTNAG 6 cut(s) 153, 280, 649, 1097, 1303, 1377
DpnI GATC 6 cut(s) 302, 679, 1071, 1580, 1702, 1727
DpnII GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
EaeI YGGCCR 3 cut(s) 46, 291, 1496
EagI CGGCCG 3 cut(s) 46, 291, 1496
Eam1104I CTCTTC 2 cut(s) 487, 867
EarI CTCTTC 2 cut(s) 487, 867
EciI GGCGGA 1 cut(s) 211
EclXI CGGCCG 3 cut(s) 46, 291, 1496
Eco130I CCWWGG 2 cut(s) 513, 1281
Eco24I GRGCYC 1 cut(s) 1397
Eco47I GGWCC 1 cut(s) 1209
Eco52I CGGCCG 3 cut(s) 46, 291, 1496
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 2 cut(s) 788, 1635
EcoT14I CCWWGG 2 cut(s) 513, 1281
EcoT38I GRGCYC 1 cut(s) 1397
ErhI CCWWGG 2 cut(s) 513, 1281
FaeI CATG 8 cut(s) 527, 576, 684, 706, 1513, 1529, 1620, 1664
FatI CATG 8 cut(s) 523, 572, 680, 702, 1509, 1525, 1616, 1660
FauI CCCGC 1 cut(s) 634
FauNDI CATATG 1 cut(s) 1598
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 1651
Fnu4HI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
FokI GGATG 4 cut(s) 107, 772, 780, 1633
FriOI GRGCYC 1 cut(s) 1397
Fsp4HI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
FspBI CTAG 2 cut(s) 1206, 1461
GlaI GCGC 2 cut(s) 214, 538
GluI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
HapII CCGG 3 cut(s) 60, 1351, 1499
HgaI GACGC 1 cut(s) 952
HhaI GCGC 2 cut(s) 215, 539
Hin1I GRCGYC 1 cut(s) 944
Hin1II CATG 8 cut(s) 527, 576, 684, 706, 1513, 1529, 1620, 1664
Hin6I GCGC 2 cut(s) 213, 537
HinP1I GCGC 2 cut(s) 213, 537
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HpaI GTTAAC 1 cut(s) 1065
HpaII CCGG 3 cut(s) 60, 1351, 1499
HphI GGTGA 3 cut(s) 49, 596, 1588
Hpy166II GTNNAC 4 cut(s) 1065, 1466, 1614, 1652
Hpy188I TCNGA 6 cut(s) 194, 283, 333, 413, 1378, 1569
Hpy188III TCNNGA 9 cut(s) 19, 170, 317, 338, 425, 725, 1317, 1351, 1739
Hpy8I GTNNAC 4 cut(s) 1065, 1466, 1614, 1652
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 6 cut(s) 509, 958, 1417, 1607, 1649, 1674
HpyCH4IV ACGT 2 cut(s) 312, 385
HpyCH4V TGCA 6 cut(s) 684, 916, 1021, 1421, 1521, 1660
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 236, 642
HpyF3I CTNAG 6 cut(s) 153, 280, 649, 1097, 1303, 1377
HpySE526I ACGT 2 cut(s) 312, 385
Hsp92I GRCGYC 1 cut(s) 944
Hsp92II CATG 8 cut(s) 527, 576, 684, 706, 1513, 1529, 1620, 1664
HspAI GCGC 2 cut(s) 213, 537
Kpn2I TCCGGA 1 cut(s) 1350
Ksp22I TGATCA 1 cut(s) 1069
KspAI GTTAAC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 4 cut(s) 97, 250, 260, 1400
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 5 cut(s) 242, 316, 802, 1461, 1495
MaeI CTAG 2 cut(s) 1206, 1461
MaeII ACGT 2 cut(s) 312, 385
MaeIII GTNAC 5 cut(s) 76, 892, 952, 1601, 1643
MalI GATC 6 cut(s) 302, 679, 1071, 1580, 1702, 1727
MbiI CCGCTC 1 cut(s) 245
MboI GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
MboII GAAGA 5 cut(s) 474, 515, 884, 1168, 1305
MfeI CAATTG 1 cut(s) 1655
MflI RGATCY 2 cut(s) 1700, 1725
MhlI GDGCHC 3 cut(s) 1111, 1397, 1630
MlyI GAGTC 7 cut(s) 24, 554, 704, 884, 1307, 1564, 1619
MmeI TCCRAC 2 cut(s) 64, 1741
MroI TCCGGA 1 cut(s) 1350
MseI TTAA 5 cut(s) 1005, 1064, 1134, 1406, 1788
MslI CAYNNNNRTG 2 cut(s) 467, 1619
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 3 cut(s) 60, 1351, 1499
MspR9I CCNGG 3 cut(s) 790, 1500, 1637
MunI CAATTG 1 cut(s) 1655
MvaI CCWGG 2 cut(s) 790, 1637
MvnI CGCG 3 cut(s) 45, 629, 642
MwoI GCNNNNNNNGC 3 cut(s) 221, 236, 642
NciI CCSGG 1 cut(s) 1500
NdeI CATATG 1 cut(s) 1598
NdeII GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
NlaIII CATG 8 cut(s) 527, 576, 684, 706, 1513, 1529, 1620, 1664
NlaIV GGNNCC 3 cut(s) 64, 625, 1396
NmeAIII GCCGAG 2 cut(s) 269, 1474
NmuCI GTSAC 1 cut(s) 1601
NspV TTCGAA 2 cut(s) 455, 596
PciSI GCTCTTC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 2 cut(s) 296, 1678
PfeI GAWTC 7 cut(s) 334, 348, 428, 617, 716, 1226, 1529
PflMI CCANNNNNTGG 3 cut(s) 661, 939, 1323
PkrI GCNGC 6 cut(s) 47, 241, 244, 295, 308, 644
PleI GAGTC 7 cut(s) 23, 553, 703, 883, 1306, 1564, 1618
PpsI GAGTC 7 cut(s) 23, 553, 703, 883, 1306, 1564, 1618
PshBI ATTAAT 1 cut(s) 1134
Psp6I CCWGG 2 cut(s) 788, 1635
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 788, 1635
PspN4I GGNNCC 3 cut(s) 64, 625, 1396
PspPI GGNCC 3 cut(s) 447, 623, 1209
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 1700, 1725
RsaI GTAC 1 cut(s) 1676
RsaNI GTAC 1 cut(s) 1675
RseI CAYNNNNRTG 2 cut(s) 467, 1619
SacII CCGCGG 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 5 cut(s) 1005, 1064, 1134, 1406, 1788
SatI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
Sau3AI GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
Sau96I GGNCC 3 cut(s) 447, 623, 1209
SchI GAGTC 7 cut(s) 24, 554, 704, 884, 1307, 1564, 1619
ScrFI CCNGG 3 cut(s) 790, 1500, 1637
SduI GDGCHC 3 cut(s) 1111, 1397, 1630
SfaNI GCATC 5 cut(s) 242, 316, 802, 1461, 1495
SfcI CTRYAG 1 cut(s) 897
Sfr303I CCGCGG 1 cut(s) 643
SfuI TTCGAA 2 cut(s) 455, 596
SgrBI CCGCGG 1 cut(s) 643
SinI GGWCC 1 cut(s) 1209
SmiMI CAYNNNNRTG 2 cut(s) 467, 1619
SspI AATATT 1 cut(s) 823
SspMI CTAG 2 cut(s) 1206, 1461
StyD4I CCNGG 3 cut(s) 788, 1498, 1635
StyI CCWWGG 2 cut(s) 513, 1281
TaaI ACNGT 6 cut(s) 509, 958, 1417, 1607, 1649, 1674
TaiI ACGT 2 cut(s) 315, 388
TaqI TCGA 8 cut(s) 171, 250, 299, 324, 339, 455, 596, 1296
TauI GCSGC 5 cut(s) 48, 242, 245, 296, 645
TfiI GAWTC 7 cut(s) 334, 348, 428, 617, 716, 1226, 1529
Tru1I TTAA 5 cut(s) 1005, 1064, 1134, 1406, 1788
Tru9I TTAA 5 cut(s) 1005, 1064, 1134, 1406, 1788
TscAI CASTG 4 cut(s) 493, 546, 1610, 1635
TseFI GTSAC 1 cut(s) 1601
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 1601
TspDTI ATGAA 9 cut(s) 75, 361, 516, 561, 774, 978, 1282, 1498, 1585
TspRI CASTG 4 cut(s) 493, 546, 1610, 1635
Van91I CCANNNNNTGG 3 cut(s) 661, 939, 1323
VpaK11BI GGWCC 1 cut(s) 1209
VspI ATTAAT 1 cut(s) 1134
XapI RAATTY 4 cut(s) 367, 441, 1386, 1514
XcmI CCANNNNNNNNNTGG 1 cut(s) 1219
XmiI GTMKAC 1 cut(s) 1651
XspI CTAG 2 cut(s) 1206, 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.