Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006351

Physical Location & Seq

Genomic Coordinates Forward (+)

20516803 .. 20518290

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0224800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGTTAGCTAAACAGGCATGGCGATTAATCTTAAATCCTCAGTCACTGATTGCACAAGTTTACAAGGCTAGATATTTTCCAAACAACTCTTTTTGGGATGCAGAACTTGGAGATGCTCCCTCTTTCTCATGGAGAAGTATACTAGAGAGTCGTCCTGTCTTGGCAGCGGGTATCCAATGGAAAGTGGGGAGGGGAGAGCAGGTCGATGTCTGGAAGGATAACTGGATTCCGGATTATCCTAGGTATCTCATTCAAAAACCACTTCATACTACCATCAGTAAAGTCGCAGAGCTAATTGATGGGGCAACTCGAAGTTGGAATCAGGCTGCTGTGCATGCTACTTTCCTACCTGAGGTAGCTCGCAAAATTCTGAGCATTCCATTAAGTAGGAGTGCTAGTGCAGATCGGTATAGATGGAAGCCGGAGAAGAATGGCAAGTACACTGTCAAGTCAGCATATTGGATTGCTCGACAACAGGTTATGGGTGAGTTTCTCACTTCTACTTCATCGGGAAATCCCTATGAGGTTCTTTGGAAGAAAATATGGAACACAAAAATCCCTGGCAAGGTGAAAATCTGCGTATGGAGGGCTGTCAACAATATCTTGCCTACTCGTGAAAGTTTAAGATACAAGGGATATACTGGGCCCTTCAATTGCTTACTTTGTAATGAGGCCTTGGAAACAAGTACTCATGTGTTCTGTCACTGCCAAGTTGCACAAGAGGCCATTGCAGCAGCAAATATTCCAATTGTTAGCTGTCTGCCAAGTAGTCTCAAAGAATGGCTTTTGCACCAGAGCCATCACCTTCATCATGAGCAATGGGAGAAGCTACTTATGCTCCTTTGGGCTCTCTGGAAGAATAGAAACAGTAAGCTGTGGCACAATAAGTGCATCAATGCTCATGCAATTGTAGTTACTACGTTCTCTTCGTATGAACAGTTTCTACAAGCACAGAAGCCTTCTGTGCATGAACCAGCTGCTAAACCGAGTAAACATTGGTCTCCACCATCTAGCAATCAGCTCAAAATCAATGTTGATGGAGCTTTCTTGCCTTCAAAGGACTTTGGAGGTATTGGTGGAGTAATCAGACGATGTGATGGCTCTTTTGTAGCTGCATTCTCCAAACTTGTGCAGCACGTTTCATCTCCAAAGCAAGTGGAACTATTAGCAATTAGAGAAGGCCTGGACTTTCTCAAGCAGAGAGGCCTTCATGACGTATGCCTTGAAAATGACTGTCAAGGAGCGATCCAAGACATTAATACGGGGGATTGTGACTTGATTGAAAATGCAAACCTGCTGCTCGACATCCAACAGTGTAGTAAGTTTGTGCATAATTTGAAATTCTCCTTTTCCCCTAGGACTGCCAATTTTGTGGCACATAGATTAGCAGCTTTTGCTTATGAATCCAATACTACTAATGTATGGATAGACCTTGCTCCAGTAAATATTCTGGATGCTCTAGCTTCTGATTGTATTCGATCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTC1_2

Protein Analysis

495

Amino Acids

56.05

Weight (kDa)

9.09

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	147 - 241	1.4e-17	zinc-binding in reverse transcriptase
RVT_3	PF13456	344 - 466	3.6e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09680 AT4G09680 AT4G09680 AT4G09680
fragaria_vesca	FvH4_5g30300 FvH4_5g30300 FvH4_5g30300
malus_domestica	MD08G1060500.v1.1
prunus_persica	Prupe.1G390200_v2.0.a1 Prupe.1G390200_v2.0.a1
pyrus_communis	pycom08g05030
rosa_chinensis	RchiOBHm_Chr7g0224651
rosa_laevigata	RLG00000001867
rosa_multiflora	Rmu_co8365027.1_g000001 Rmu_sc0000144.1_g000039 Rmu_sc0000144.1_g000045 Rmu_sc0038806.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234500 Rroxscaffold_3G00234540
rosa_rugosa	Rorug07G0224600 Rorug07G0224700 Rorug07G0224800
rosa_samantha	Rh7AG378200 Rh7BG360800 Rh7CG397500 Rh7DG370900
rosa_wichuraiana	Rw7G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	190, 1302
AccI	GTMKAC	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	1240
AcsI	RAATTY	2 cut(s)	366, 1340
AfaI	GTAC	2 cut(s)	440, 688
AfiI	CCNNNNNNNGG	2 cut(s)	352, 565
AgsI	TTSAA	6 cut(s)	254, 652, 1056, 1226, 1283, 1339
AjnI	CCWGG	2 cut(s)	559, 1182
Alw26I	GTCTC	2 cut(s)	776, 1005
AlwI	GGATC	1 cut(s)	1240
AlwNI	CAGNNNCTG	1 cut(s)	46
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	5 cut(s)	644, 672, 723, 1180, 1204
ApaI	GGGCCC	1 cut(s)	648
ApeKI	GCWGC	9 cut(s)	164, 326, 731, 734, 977, 1112, 1132, 1297, 1388
ApoI	RAATTY	2 cut(s)	366, 1340
AseI	ATTAAT	2 cut(s)	26, 1257
Asp700I	GAANNNNTTC	1 cut(s)	939
AspA2I	CCTAGG	2 cut(s)	239, 1355
AspS9I	GGNCC	2 cut(s)	644, 645
AsuHPI	GGTGA	3 cut(s)	497, 580, 794
AvrII	CCTAGG	2 cut(s)	239, 1355
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	648
BanII	GRGCYC	2 cut(s)	648, 850
BauI	CACGAG	1 cut(s)	612
BbvI	GCAGC	9 cut(s)	176, 313, 743, 746, 964, 1099, 1144, 1284, 1400
BccI	CCATC	7 cut(s)	281, 293, 408, 807, 1015, 1031, 1091
BciT130I	CCWGG	2 cut(s)	561, 1184
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	776, 1005
BfaI	CTAG	7 cut(s)	69, 143, 240, 396, 1011, 1356, 1460
BfuAI	ACCTGC	2 cut(s)	190, 1302
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	9 cut(s)	165, 327, 732, 735, 978, 1113, 1133, 1298, 1389
BlnI	CCTAGG	2 cut(s)	239, 1355
BlsI	GCNGC	9 cut(s)	166, 328, 733, 736, 979, 1114, 1134, 1299, 1390
BmcAI	AGTACT	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	561, 1184
BmgT120I	GGNCC	2 cut(s)	644, 645
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	2 cut(s)	561, 1184
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	4 cut(s)	88, 103, 900, 1444
BmuI	ACTGGG	1 cut(s)	651
BpmI	CTGGAG	1 cut(s)	1422
BpuEI	CTTGAG	1 cut(s)	1178
BsaI	GGTCTC	1 cut(s)	1005
BsaJI	CCNNGG	4 cut(s)	239, 559, 675, 1355
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	6 cut(s)	186, 216, 382, 412, 822, 852
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 565
Bse1I	ACTGG	3 cut(s)	227, 646, 1439
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	2 cut(s)	726, 824
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	561, 1184
BseDI	CCNNGG	4 cut(s)	239, 559, 675, 1355
BseGI	GGATG	3 cut(s)	103, 1305, 1459
BseLI	CCNNNNNNNGG	2 cut(s)	352, 565
BseMI	GCAATG	2 cut(s)	726, 824
BseMII	CTCAG	3 cut(s)	53, 342, 362
BseNI	ACTGG	3 cut(s)	227, 646, 1439
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	9 cut(s)	176, 313, 743, 746, 964, 1099, 1144, 1284, 1400
BsgI	GTGCAG	2 cut(s)	420, 1151
BshFI	GGCC	5 cut(s)	646, 674, 725, 1182, 1206
BsiSI	CCGG	2 cut(s)	230, 422
BslI	CCNNNNNNNGG	2 cut(s)	352, 565
BsmAI	GTCTC	2 cut(s)	776, 1005
BsmI	GAATGC	2 cut(s)	375, 1115
BsnI	GGCC	5 cut(s)	646, 674, 725, 1182, 1206
Bso31I	GGTCTC	1 cut(s)	1005
Bsp120I	GGGCCC	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	648, 850
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	403, 1245, 1478
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	5 cut(s)	646, 674, 725, 1182, 1206
BspCNI	CTCAG	3 cut(s)	52, 343, 363
BspEI	TCCGGA	1 cut(s)	229
BspHI	TCATGA	2 cut(s)	811, 1210
BspLI	GGNNCC	1 cut(s)	646
BspMI	ACCTGC	2 cut(s)	190, 1302
BspPI	GGATC	1 cut(s)	1240
BspTNI	GGTCTC	1 cut(s)	1005
BsrDI	GCAATG	2 cut(s)	726, 824
BsrI	ACTGG	3 cut(s)	227, 646, 1439
BssECI	CCNNGG	4 cut(s)	239, 559, 675, 1355
BssMI	GATC	3 cut(s)	403, 1245, 1478
BssNAI	GTATAC	1 cut(s)	140
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	3 cut(s)	239, 675, 1355
Bst1107I	GTATAC	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	561, 1184
Bst4CI	ACNGT	5 cut(s)	445, 869, 939, 1235, 1314
Bst6I	CTCTTC	1 cut(s)	931
BstAPI	GCANNNNNTGC	1 cut(s)	1394
BstC8I	GCNNGC	2 cut(s)	336, 361
BstDEI	CTNAG	3 cut(s)	39, 351, 371
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	103, 1305, 1459
BstKTI	GATC	3 cut(s)	406, 1248, 1481
BstMAI	GTCTC	2 cut(s)	776, 1005
BstMBI	GATC	3 cut(s)	403, 1245, 1478
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 335, 722, 731, 835, 964, 1394
BstNI	CCWGG	2 cut(s)	561, 1184
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	559, 1182
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	9 cut(s)	176, 313, 743, 746, 964, 1099, 1144, 1284, 1400
BstXI	CCANNNNNNTGG	1 cut(s)	1372
BstZ17I	GTATAC	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	5 cut(s)	646, 674, 725, 1182, 1206
BtsCI	GGATG	3 cut(s)	103, 1305, 1459
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	4 cut(s)	44, 441, 703, 1319
BveI	ACCTGC	2 cut(s)	190, 1302
Cac8I	GCNNGC	2 cut(s)	336, 361
CaiI	CAGNNNCTG	1 cut(s)	46
CciI	TCATGA	2 cut(s)	811, 1210
Cfr13I	GGNCC	2 cut(s)	644, 645
Csp6I	GTAC	2 cut(s)	439, 687
CspCI	CAANNNNNGTGG	2 cut(s)	1137, 1172
CviAII	CATG	8 cut(s)	18, 129, 335, 692, 812, 902, 968, 1211
CviQI	GTAC	2 cut(s)	439, 687
DdeI	CTNAG	3 cut(s)	39, 351, 371
DpnI	GATC	3 cut(s)	405, 1247, 1480
DpnII	GATC	3 cut(s)	403, 1245, 1478
Eam1104I	CTCTTC	1 cut(s)	931
EarI	CTCTTC	1 cut(s)	931
Eco130I	CCWWGG	3 cut(s)	239, 675, 1355
Eco147I	AGGCCT	3 cut(s)	674, 1182, 1206
Eco24I	GRGCYC	2 cut(s)	648, 850
Eco31I	GGTCTC	1 cut(s)	1005
Eco81I	CCTNAGG	1 cut(s)	351
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRII	CCWGG	2 cut(s)	559, 1182
EcoT14I	CCWWGG	3 cut(s)	239, 675, 1355
EcoT38I	GRGCYC	2 cut(s)	648, 850
ErhI	CCWWGG	3 cut(s)	239, 675, 1355
FaeI	CATG	8 cut(s)	21, 132, 338, 695, 815, 905, 971, 1214
FalI	AAGNNNNNCTT	2 cut(s)	768, 800
FatI	CATG	8 cut(s)	17, 128, 334, 691, 811, 901, 967, 1210
FauI	CCCGC	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	9 cut(s)	165, 327, 732, 735, 978, 1113, 1133, 1298, 1389
FokI	GGATG	3 cut(s)	110, 1292, 1466
FriOI	GRGCYC	2 cut(s)	648, 850
Fsp4HI	GCNGC	9 cut(s)	165, 327, 732, 735, 978, 1113, 1133, 1298, 1389
FspBI	CTAG	7 cut(s)	69, 143, 240, 396, 1011, 1356, 1460
GluI	GCNGC	9 cut(s)	165, 327, 732, 735, 978, 1113, 1133, 1298, 1389
GsuI	CTGGAG	1 cut(s)	1422
HaeIII	GGCC	5 cut(s)	646, 674, 725, 1182, 1206
HapII	CCGG	2 cut(s)	230, 422
Hin1II	CATG	8 cut(s)	21, 132, 338, 695, 815, 905, 971, 1214
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	4 cut(s)	148, 226, 319, 1403
HpaII	CCGG	2 cut(s)	230, 422
HphI	GGTGA	3 cut(s)	497, 580, 794
Hpy166II	GTNNAC	5 cut(s)	61, 140, 441, 595, 992
Hpy188I	TCNGA	3 cut(s)	372, 1088, 1468
Hpy188III	TCNNGA	8 cut(s)	211, 230, 510, 614, 812, 853, 1211, 1451
Hpy8I	GTNNAC	5 cut(s)	61, 140, 441, 595, 992
HpyAV	CCTTC	7 cut(s)	208, 658, 815, 969, 1062, 1172, 1217
HpyCH4III	ACNGT	5 cut(s)	445, 869, 939, 1235, 1314
HpyCH4IV	ACGT	3 cut(s)	920, 1137, 1215
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 335, 722, 731, 835, 964, 1394
HpyF3I	CTNAG	3 cut(s)	39, 351, 371
HpySE526I	ACGT	3 cut(s)	920, 1137, 1215
Hsp92II	CATG	8 cut(s)	21, 132, 338, 695, 815, 905, 971, 1214
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	403, 1245, 1478
LmnI	GCTCC	5 cut(s)	121, 843, 1040, 1241, 1441
Lsp1109I	GCAGC	9 cut(s)	176, 313, 743, 746, 964, 1099, 1144, 1284, 1400
LweI	GCATC	4 cut(s)	88, 103, 900, 1444
MaeI	CTAG	7 cut(s)	69, 143, 240, 396, 1011, 1356, 1460
MaeII	ACGT	3 cut(s)	920, 1137, 1215
MaeIII	GTNAC	4 cut(s)	42, 701, 913, 1271
MalI	GATC	3 cut(s)	405, 1247, 1480
MboI	GATC	3 cut(s)	403, 1245, 1478
MboII	GAAGA	4 cut(s)	439, 547, 868, 918
MfeI	CAATTG	3 cut(s)	652, 747, 906
MhlI	GDGCHC	2 cut(s)	648, 850
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	296, 1333
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	5 cut(s)	26, 32, 383, 623, 1257
MspA1I	CMGCKG	2 cut(s)	167, 977
MspI	CCGG	2 cut(s)	230, 422
MspR9I	CCNGG	2 cut(s)	561, 1184
MunI	CAATTG	3 cut(s)	652, 747, 906
Mva1269I	GAATGC	2 cut(s)	375, 1115
MvaI	CCWGG	2 cut(s)	561, 1184
MwoI	GCNNNNNNNGC	7 cut(s)	14, 335, 722, 731, 835, 964, 1394
NdeII	GATC	3 cut(s)	403, 1245, 1478
NlaIII	CATG	8 cut(s)	21, 132, 338, 695, 815, 905, 971, 1214
NlaIV	GGNNCC	1 cut(s)	646
NmuCI	GTSAC	3 cut(s)	42, 701, 1271
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PagI	TCATGA	2 cut(s)	811, 1210
PceI	AGGCCT	3 cut(s)	674, 1182, 1206
PcsI	WCGNNNNNNNCGW	1 cut(s)	926
PctI	GAATGC	2 cut(s)	375, 1115
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	3 cut(s)	226, 319, 1403
PkrI	GCNGC	9 cut(s)	166, 328, 733, 736, 979, 1114, 1134, 1299, 1390
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PshBI	ATTAAT	2 cut(s)	26, 1257
Psp6I	CCWGG	2 cut(s)	559, 1182
PspGI	CCWGG	2 cut(s)	559, 1182
PspN4I	GGNNCC	1 cut(s)	646
PspOMI	GGGCCC	1 cut(s)	644
PspPI	GGNCC	2 cut(s)	644, 645
PsrI	GAACNNNNNNTAC	2 cut(s)	927, 959
PstNI	CAGNNNCTG	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	2 cut(s)	440, 688
RsaNI	GTAC	2 cut(s)	439, 687
SaqAI	TTAA	5 cut(s)	26, 32, 383, 623, 1257
SatI	GCNGC	9 cut(s)	165, 327, 732, 735, 978, 1113, 1133, 1298, 1389
Sau3AI	GATC	3 cut(s)	403, 1245, 1478
Sau96I	GGNCC	2 cut(s)	644, 645
ScaI	AGTACT	1 cut(s)	688
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	561, 1184
SduI	GDGCHC	2 cut(s)	648, 850
SfaNI	GCATC	4 cut(s)	88, 103, 900, 1444
SmlI	CTYRAG	1 cut(s)	1193
SmoI	CTYRAG	1 cut(s)	1193
SphI	GCATGC	1 cut(s)	338
SseBI	AGGCCT	3 cut(s)	674, 1182, 1206
SsiI	CCGC	1 cut(s)	167
SspI	AATATT	2 cut(s)	742, 1447
SspMI	CTAG	7 cut(s)	69, 143, 240, 396, 1011, 1356, 1460
StuI	AGGCCT	3 cut(s)	674, 1182, 1206
StyD4I	CCNGG	2 cut(s)	559, 1182
StyI	CCWWGG	3 cut(s)	239, 675, 1355
TaaI	ACNGT	5 cut(s)	445, 869, 939, 1235, 1314
TaiI	ACGT	3 cut(s)	923, 1140, 1218
TaqI	TCGA	5 cut(s)	204, 310, 469, 1302, 1477
TatI	WGTACW	2 cut(s)	438, 686
TfiI	GAWTC	3 cut(s)	226, 319, 1403
Tru1I	TTAA	5 cut(s)	26, 32, 383, 623, 1257
Tru9I	TTAA	5 cut(s)	26, 32, 383, 623, 1257
TscAI	CASTG	4 cut(s)	51, 448, 710, 1319
TseFI	GTSAC	3 cut(s)	42, 701, 1271
TseI	GCWGC	9 cut(s)	164, 326, 731, 734, 977, 1112, 1132, 1297, 1388
Tsp45I	GTSAC	3 cut(s)	42, 701, 1271
TspDTI	ATGAA	8 cut(s)	254, 495, 797, 948, 984, 1131, 1199, 1416
TspRI	CASTG	4 cut(s)	51, 448, 710, 1319
VspI	ATTAAT	2 cut(s)	26, 1257
XagI	CCTNNNNNAGG	1 cut(s)	350
XapI	RAATTY	2 cut(s)	366, 1340
XceI	RCATGY	1 cut(s)	338
XmaJI	CCTAGG	2 cut(s)	239, 1355
XmiI	GTMKAC	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	7 cut(s)	69, 143, 240, 396, 1011, 1356, 1460
ZrmI	AGTACT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.