Rmu_sc0000144.1_g000039

CST complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
Physical Location & Seq
Reverse (-)
156700 .. 159520
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000144.1_g000039.1.cds

Sequence Viewer

Length: 1542 bp
atggaaagtgtgagagtcttgacaatcgcagacttactccaacgcggccgtttcctcaccggaacctcctctttcgttaccccttcatttgctccaaaatcaaacccctccatttctcccatcccctcaaatcctaaccctaatgccaccactaaggttctcccctctctcgaccgctttgccctcatcatcggaactataacactccccagcgccacctccgcctccgcttcaatcgccgccgctcctcgatgctcctacaacacttgcttccaattctcagacaactcggccgcctcgatctgctgcgacgttcttgatttcgatgctcggattctcgacaagagaatcaatgttctcgcttggaatttcattccattcaaacgtggcggtgggttcttggagattatcagatgggggtttcaggattcagttgctggaatttggccctgttcgaatatcatttctatggagttaggctcttccactgctaatgctaatgaagacagttccaaggctcgtcatggtgtgttcggcgcactggagtcggttagccctttctccattgtttcatgtagaacaggtgatagcaattcgaaaagcaacaaggctttggattcaggccctgcgacaagcctccgcggcttcttagtccaatttatggtttgtgagtgtagatcatgcagttcaaaggagtcaatcatggttttgaaggattcaattcaagaaagagatactcattcttttaccaaaccaatgtttgtgtattgttgcggttctgcttcatcctggcatcctgtatttacgaaacttgtgggaaatattgttgctatatcaggcttgaaaaagaagttggtttttatagggaaggaagagtctaaagtaatgtgtgtaactacaggaagttctgccttgcatttgagcagattgtccaagaaatggacgccgaaagttacagtaggtagaaagggaaatggggaagttggttcatatagagggagagttaaaggtgtgtatatgcaaggaatggttgtggaattggacaatgaggtgtggcttttgttaactgatcaactgcttactccaccacatagtcttagggctggtgctctcaagggaggattagttgagatgtttgctagttcacagatgccttcgtcaaagcatcaaactcggccgggagtattcatggaattttgcaagcatgattcctgtgcctgtggttgtgagccatacatagataatctgactctggtgatccccttgtcttttttcatatgtcactgtgagtccacatggatgagggcactgaacctggaaggtaacagtagacaattgcatgatgacaaacgtagtgcagtttattacttgatttatctacctctgtatgttgatgttatacagacttctccatcttccggaagactgcagttggttgatgcaactggtagcattgatgttcttgtaccagaccttccatcaacttgggatgccactagaataatcaaggtcatgtttgacaataatagtacttgggtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

56.01

Weight (kDa)

8.65

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 661, 939
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 1330
AccII CGCG 2 cut(s) 45, 642
AccIII TCCGGA 1 cut(s) 1418
AclWI GGATC 1 cut(s) 1252
AcoI YGGCCR 3 cut(s) 46, 291, 1175
AcsI RAATTY 3 cut(s) 367, 441, 1193
AcyI GRCGYC 1 cut(s) 944
AfaI GTAC 2 cut(s) 1467, 1531
AfiI CCNNNNNNNGG 3 cut(s) 661, 939, 1418
AgsI TTSAA 7 cut(s) 234, 382, 690, 712, 720, 725, 844
AjnI CCWGG 2 cut(s) 788, 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
Alw21I GWGCWC 1 cut(s) 1111
AlwI GGATC 1 cut(s) 1252
AlwNI CAGNNNCTG 2 cut(s) 437, 626
Aor13HI TCCGGA 1 cut(s) 1418
AoxI GGCC 5 cut(s) 46, 291, 446, 622, 1175
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 3 cut(s) 367, 441, 1193
AspLEI GCGC 2 cut(s) 215, 539
AspS9I GGNCC 2 cut(s) 447, 623
AsuC2I CCSGG 1 cut(s) 1179
AsuHPI GGTGA 3 cut(s) 49, 596, 1267
AsuII TTCGAA 2 cut(s) 455, 596
BaeGI GKGCMC 1 cut(s) 1309
BarI GAAGNNNNNNTAC 2 cut(s) 1458, 1490
BbsI GAAGAC 2 cut(s) 510, 1429
Bbv12I GWGCWC 1 cut(s) 1111
BbvI GCAGC 1 cut(s) 293
BccI CCATC 4 cut(s) 128, 408, 1420, 1486
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 6 cut(s) 161, 195, 528, 562, 1154, 1188
BciT130I CCWGG 2 cut(s) 790, 1316
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 1 cut(s) 1179
BfaI CTAG 2 cut(s) 1140, 1497
BfmI CTRYAG 2 cut(s) 897, 1427
BfoI RGCGCY 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 642
BisI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
BlsI GCNGC 6 cut(s) 47, 241, 244, 295, 308, 644
BmcAI AGTACT 1 cut(s) 1531
Bme1390I CCNGG 3 cut(s) 790, 1179, 1316
BmgT120I GGNCC 2 cut(s) 447, 623
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 3 cut(s) 790, 1179, 1316
BmsI GCATC 7 cut(s) 242, 316, 802, 1140, 1174, 1429, 1480
BpiI GAAGAC 2 cut(s) 510, 1429
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 2 cut(s) 455, 596
BpuEI CTTGAG 1 cut(s) 1097
BpuMI CCSGG 1 cut(s) 1179
BsaHI GRCGYC 1 cut(s) 944
BsaJI CCNNGG 2 cut(s) 513, 640
BsaWI WCCGGW 2 cut(s) 59, 1418
BsaXI ACNNNNNCTCC 2 cut(s) 1110, 1140
Bsc4I CCNNNNNNNGG 3 cut(s) 661, 939, 1418
Bse1I ACTGG 2 cut(s) 546, 1450
BseAI TCCGGA 1 cut(s) 1418
BseBI CCWGG 2 cut(s) 790, 1316
BseDI CCNNGG 2 cut(s) 513, 640
BseGI GGATG 5 cut(s) 120, 785, 793, 1305, 1495
BseLI CCNNNNNNNGG 3 cut(s) 661, 939, 1418
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 546, 1450
BseRI GAGGAG 2 cut(s) 58, 237
BseSI GKGCMC 1 cut(s) 1309
BseX3I CGGCCG 3 cut(s) 46, 291, 1175
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 1377
Bsh1236I CGCG 2 cut(s) 45, 642
Bsh1285I CGRYCG 4 cut(s) 49, 175, 294, 1178
BshFI GGCC 5 cut(s) 48, 293, 448, 624, 1177
BsiEI CGRYCG 4 cut(s) 49, 175, 294, 1178
BsiHKAI GWGCWC 1 cut(s) 1111
BsiSI CCGG 3 cut(s) 60, 1178, 1419
BslI CCNNNNNNNGG 3 cut(s) 661, 939, 1418
BsnI GGCC 5 cut(s) 48, 293, 448, 624, 1177
Bsp119I TTCGAA 2 cut(s) 455, 596
Bsp1286I GDGCHC 2 cut(s) 1111, 1309
Bsp13I TCCGGA 1 cut(s) 1418
Bsp143I GATC 4 cut(s) 300, 677, 1069, 1257
BspANI GGCC 5 cut(s) 48, 293, 448, 624, 1177
BspCNI CTCAG 1 cut(s) 293
BspEI TCCGGA 1 cut(s) 1418
BspFNI CGCG 2 cut(s) 45, 642
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 1431
BspPI GGATC 1 cut(s) 1252
BspQI GCTCTTC 1 cut(s) 487
BspT104I TTCGAA 2 cut(s) 455, 596
BsrBI CCGCTC 1 cut(s) 245
BsrI ACTGG 2 cut(s) 546, 1450
BssECI CCNNGG 2 cut(s) 513, 640
BssMI GATC 4 cut(s) 300, 677, 1069, 1257
BssNI GRCGYC 1 cut(s) 944
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 790, 1316
Bst4CI ACNGT 4 cut(s) 509, 958, 1286, 1328
Bst6I CTCTTC 2 cut(s) 487, 867
BstACI GRCGYC 1 cut(s) 944
BstBI TTCGAA 2 cut(s) 455, 596
BstC8I GCNNGC 1 cut(s) 1202
BstDEI CTNAG 4 cut(s) 153, 280, 649, 1097
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 5 cut(s) 120, 785, 793, 1305, 1495
BstFNI CGCG 2 cut(s) 45, 642
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 539
BstKTI GATC 4 cut(s) 303, 680, 1072, 1260
BstMBI GATC 4 cut(s) 300, 677, 1069, 1257
BstMCI CGRYCG 4 cut(s) 49, 175, 294, 1178
BstMWI GCNNNNNNNGC 3 cut(s) 221, 236, 642
BstNI CCWGG 2 cut(s) 790, 1316
BstSCI CCNGG 3 cut(s) 788, 1177, 1314
BstSFI CTRYAG 2 cut(s) 897, 1427
BstSLI GKGCMC 1 cut(s) 1309
BstUI CGCG 2 cut(s) 45, 642
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 510, 1429
BstXI CCANNNNNNTGG 1 cut(s) 1485
BstZI CGGCCG 3 cut(s) 46, 291, 1175
BsuRI GGCC 5 cut(s) 48, 293, 448, 624, 1177
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 5 cut(s) 120, 785, 793, 1305, 1495
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 4 cut(s) 486, 539, 1282, 1307
Cac8I GCNNGC 1 cut(s) 1202
CaiI CAGNNNCTG 2 cut(s) 437, 626
CfoI GCGC 2 cut(s) 215, 539
Cfr13I GGNCC 2 cut(s) 447, 623
Cfr42I CCGCGG 1 cut(s) 643
CseI GACGC 1 cut(s) 952
Csp6I GTAC 2 cut(s) 1466, 1530
CviAII CATG 9 cut(s) 524, 573, 681, 703, 1189, 1205, 1296, 1340, 1513
CviQI GTAC 2 cut(s) 1466, 1530
DdeI CTNAG 4 cut(s) 153, 280, 649, 1097
DpnI GATC 4 cut(s) 302, 679, 1071, 1259
DpnII GATC 4 cut(s) 300, 677, 1069, 1257
EaeI YGGCCR 3 cut(s) 46, 291, 1175
EagI CGGCCG 3 cut(s) 46, 291, 1175
Eam1104I CTCTTC 2 cut(s) 487, 867
EarI CTCTTC 2 cut(s) 487, 867
EciI GGCGGA 1 cut(s) 211
EclXI CGGCCG 3 cut(s) 46, 291, 1175
Eco130I CCWWGG 1 cut(s) 513
Eco52I CGGCCG 3 cut(s) 46, 291, 1175
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 2 cut(s) 788, 1314
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 9 cut(s) 527, 576, 684, 706, 1192, 1208, 1299, 1343, 1516
FatI CATG 9 cut(s) 523, 572, 680, 702, 1188, 1204, 1295, 1339, 1512
FauNDI CATATG 1 cut(s) 1277
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 1330
Fnu4HI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
FokI GGATG 5 cut(s) 107, 772, 780, 1312, 1502
Fsp4HI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
FspBI CTAG 2 cut(s) 1140, 1497
GlaI GCGC 2 cut(s) 214, 538
GluI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 5 cut(s) 48, 293, 448, 624, 1177
HapII CCGG 3 cut(s) 60, 1178, 1419
HgaI GACGC 1 cut(s) 952
HhaI GCGC 2 cut(s) 215, 539
Hin1I GRCGYC 1 cut(s) 944
Hin1II CATG 9 cut(s) 527, 576, 684, 706, 1192, 1208, 1299, 1343, 1516
Hin6I GCGC 2 cut(s) 213, 537
HinP1I GCGC 2 cut(s) 213, 537
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HpaI GTTAAC 1 cut(s) 1065
HpaII CCGG 3 cut(s) 60, 1178, 1419
HphI GGTGA 3 cut(s) 49, 596, 1267
Hpy166II GTNNAC 4 cut(s) 1065, 1145, 1293, 1331
Hpy188I TCNGA 5 cut(s) 194, 283, 333, 413, 1248
Hpy188III TCNNGA 7 cut(s) 19, 170, 317, 338, 425, 725, 1419
Hpy8I GTNNAC 4 cut(s) 1065, 1145, 1293, 1331
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 6 cut(s) 93, 706, 862, 1164, 1313, 1484
HpyCH4III ACNGT 4 cut(s) 509, 958, 1286, 1328
HpyCH4IV ACGT 3 cut(s) 312, 385, 1351
HpyCH4V TGCA 8 cut(s) 684, 916, 1021, 1200, 1339, 1358, 1429, 1442
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 236, 642
HpyF3I CTNAG 4 cut(s) 153, 280, 649, 1097
HpySE526I ACGT 3 cut(s) 312, 385, 1351
Hsp92I GRCGYC 1 cut(s) 944
Hsp92II CATG 9 cut(s) 527, 576, 684, 706, 1192, 1208, 1299, 1343, 1516
HspAI GCGC 2 cut(s) 213, 537
Kpn2I TCCGGA 1 cut(s) 1418
Ksp22I TGATCA 1 cut(s) 1069
KspAI GTTAAC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 4 cut(s) 300, 677, 1069, 1257
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 3 cut(s) 97, 250, 260
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 7 cut(s) 242, 316, 802, 1140, 1174, 1429, 1480
MaeI CTAG 2 cut(s) 1140, 1497
MaeII ACGT 3 cut(s) 312, 385, 1351
MaeIII GTNAC 5 cut(s) 76, 892, 952, 1280, 1322
MalI GATC 4 cut(s) 302, 679, 1071, 1259
MbiI CCGCTC 1 cut(s) 245
MboI GATC 4 cut(s) 300, 677, 1069, 1257
MboII GAAGA 5 cut(s) 474, 515, 884, 1407, 1434
MfeI CAATTG 1 cut(s) 1334
MhlI GDGCHC 2 cut(s) 1111, 1309
MluCI AATT 9 cut(s) 275, 367, 441, 592, 656, 720, 1037, 1193, 1334
MlyI GAGTC 6 cut(s) 24, 554, 704, 884, 1243, 1298
MmeI TCCRAC 1 cut(s) 64
MroI TCCGGA 1 cut(s) 1418
MseI TTAA 2 cut(s) 1005, 1064
MslI CAYNNNNRTG 2 cut(s) 467, 1298
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 3 cut(s) 60, 1178, 1419
MspR9I CCNGG 3 cut(s) 790, 1179, 1316
MunI CAATTG 1 cut(s) 1334
MvaI CCWGG 2 cut(s) 790, 1316
MvnI CGCG 2 cut(s) 45, 642
MwoI GCNNNNNNNGC 3 cut(s) 221, 236, 642
NciI CCSGG 1 cut(s) 1179
NdeI CATATG 1 cut(s) 1277
NdeII GATC 4 cut(s) 300, 677, 1069, 1257
NlaIII CATG 9 cut(s) 527, 576, 684, 706, 1192, 1208, 1299, 1343, 1516
NlaIV GGNNCC 1 cut(s) 64
NmeAIII GCCGAG 2 cut(s) 269, 1153
NmuCI GTSAC 1 cut(s) 1280
NspV TTCGAA 2 cut(s) 455, 596
PciSI GCTCTTC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PfeI GAWTC 6 cut(s) 334, 348, 428, 617, 716, 1208
PflMI CCANNNNNTGG 2 cut(s) 661, 939
PkrI GCNGC 6 cut(s) 47, 241, 244, 295, 308, 644
PleI GAGTC 6 cut(s) 23, 553, 703, 883, 1243, 1297
PpsI GAGTC 6 cut(s) 23, 553, 703, 883, 1243, 1297
Psp6I CCWGG 2 cut(s) 788, 1314
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 788, 1314
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 447, 623
PstI CTGCAG 1 cut(s) 1431
PstNI CAGNNNCTG 2 cut(s) 437, 626
RsaI GTAC 2 cut(s) 1467, 1531
RsaNI GTAC 2 cut(s) 1466, 1530
RseI CAYNNNNRTG 2 cut(s) 467, 1298
SacII CCGCGG 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 2 cut(s) 1005, 1064
SatI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
Sau3AI GATC 4 cut(s) 300, 677, 1069, 1257
Sau96I GGNCC 2 cut(s) 447, 623
ScaI AGTACT 1 cut(s) 1531
SchI GAGTC 6 cut(s) 24, 554, 704, 884, 1243, 1298
ScrFI CCNGG 3 cut(s) 790, 1179, 1316
SduI GDGCHC 2 cut(s) 1111, 1309
SfaNI GCATC 7 cut(s) 242, 316, 802, 1140, 1174, 1429, 1480
SfcI CTRYAG 2 cut(s) 897, 1427
Sfr303I CCGCGG 1 cut(s) 643
SfuI TTCGAA 2 cut(s) 455, 596
SgrBI CCGCGG 1 cut(s) 643
SmiMI CAYNNNNRTG 2 cut(s) 467, 1298
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
Sse9I AATT 9 cut(s) 275, 367, 441, 592, 656, 720, 1037, 1193, 1334
SspI AATATT 1 cut(s) 823
SspMI CTAG 2 cut(s) 1140, 1497
StyD4I CCNGG 3 cut(s) 788, 1177, 1314
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 4 cut(s) 509, 958, 1286, 1328
TaiI ACGT 3 cut(s) 315, 388, 1354
TaqI TCGA 7 cut(s) 171, 250, 299, 324, 339, 455, 596
TasI AATT 9 cut(s) 275, 367, 441, 592, 656, 720, 1037, 1193, 1334
TatI WGTACW 1 cut(s) 1529
TauI GCSGC 5 cut(s) 48, 242, 245, 296, 645
TfiI GAWTC 6 cut(s) 334, 348, 428, 617, 716, 1208
Tru1I TTAA 2 cut(s) 1005, 1064
Tru9I TTAA 2 cut(s) 1005, 1064
TscAI CASTG 4 cut(s) 493, 546, 1289, 1314
TseFI GTSAC 1 cut(s) 1280
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 1280
TspDTI ATGAA 8 cut(s) 75, 361, 516, 561, 774, 978, 1177, 1264
TspRI CASTG 4 cut(s) 493, 546, 1289, 1314
Van91I CCANNNNNTGG 2 cut(s) 661, 939
XapI RAATTY 3 cut(s) 367, 441, 1193
XmiI GTMKAC 1 cut(s) 1330
XspI CTAG 2 cut(s) 1140, 1497
ZrmI AGTACT 1 cut(s) 1531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.