Rmu_sc0000144.1_g000039

CST complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
OG0006351
Physical Location & Seq
Reverse (-)
156700 .. 159520
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1542 bp
atggaaagtgtgagagtcttgacaatcgcagacttactccaacgcggccgtttcctcaccggaacctcctctttcgttaccccttcatttgctccaaaatcaaacccctccatttctcccatcccctcaaatcctaaccctaatgccaccactaaggttctcccctctctcgaccgctttgccctcatcatcggaactataacactccccagcgccacctccgcctccgcttcaatcgccgccgctcctcgatgctcctacaacacttgcttccaattctcagacaactcggccgcctcgatctgctgcgacgttcttgatttcgatgctcggattctcgacaagagaatcaatgttctcgcttggaatttcattccattcaaacgtggcggtgggttcttggagattatcagatgggggtttcaggattcagttgctggaatttggccctgttcgaatatcatttctatggagttaggctcttccactgctaatgctaatgaagacagttccaaggctcgtcatggtgtgttcggcgcactggagtcggttagccctttctccattgtttcatgtagaacaggtgatagcaattcgaaaagcaacaaggctttggattcaggccctgcgacaagcctccgcggcttcttagtccaatttatggtttgtgagtgtagatcatgcagttcaaaggagtcaatcatggttttgaaggattcaattcaagaaagagatactcattcttttaccaaaccaatgtttgtgtattgttgcggttctgcttcatcctggcatcctgtatttacgaaacttgtgggaaatattgttgctatatcaggcttgaaaaagaagttggtttttatagggaaggaagagtctaaagtaatgtgtgtaactacaggaagttctgccttgcatttgagcagattgtccaagaaatggacgccgaaagttacagtaggtagaaagggaaatggggaagttggttcatatagagggagagttaaaggtgtgtatatgcaaggaatggttgtggaattggacaatgaggtgtggcttttgttaactgatcaactgcttactccaccacatagtcttagggctggtgctctcaagggaggattagttgagatgtttgctagttcacagatgccttcgtcaaagcatcaaactcggccgggagtattcatggaattttgcaagcatgattcctgtgcctgtggttgtgagccatacatagataatctgactctggtgatccccttgtcttttttcatatgtcactgtgagtccacatggatgagggcactgaacctggaaggtaacagtagacaattgcatgatgacaaacgtagtgcagtttattacttgatttatctacctctgtatgttgatgttatacagacttctccatcttccggaagactgcagttggttgatgcaactggtagcattgatgttcttgtaccagaccttccatcaacttgggatgccactagaataatcaaggtcatgtttgacaataatagtacttgggtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTC1_2

Protein Analysis

513

Amino Acids

56.01

Weight (kDa)

8.65

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTC1_2 PF15491 61 - 370 2.6e-95 CST, telomere maintenance, complex subunit CTC1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 661, 939
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 1330
AccII CGCG 2 cut(s) 45, 642
AccIII TCCGGA 1 cut(s) 1418
AclWI GGATC 1 cut(s) 1252
AcoI YGGCCR 3 cut(s) 46, 291, 1175
AcsI RAATTY 3 cut(s) 367, 441, 1193
AcyI GRCGYC 1 cut(s) 944
AfaI GTAC 2 cut(s) 1467, 1531
AfiI CCNNNNNNNGG 3 cut(s) 661, 939, 1418
AgsI TTSAA 7 cut(s) 234, 382, 690, 712, 720, 725, 844
AjnI CCWGG 2 cut(s) 788, 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
Alw21I GWGCWC 1 cut(s) 1111
AlwI GGATC 1 cut(s) 1252
AlwNI CAGNNNCTG 2 cut(s) 437, 626
Aor13HI TCCGGA 1 cut(s) 1418
AoxI GGCC 5 cut(s) 46, 291, 446, 622, 1175
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 3 cut(s) 367, 441, 1193
AspLEI GCGC 2 cut(s) 215, 539
AspS9I GGNCC 2 cut(s) 447, 623
AsuC2I CCSGG 1 cut(s) 1179
AsuHPI GGTGA 3 cut(s) 49, 596, 1267
AsuII TTCGAA 2 cut(s) 455, 596
BaeGI GKGCMC 1 cut(s) 1309
BarI GAAGNNNNNNTAC 2 cut(s) 1458, 1490
BbsI GAAGAC 2 cut(s) 510, 1429
Bbv12I GWGCWC 1 cut(s) 1111
BbvI GCAGC 1 cut(s) 293
BccI CCATC 4 cut(s) 128, 408, 1420, 1486
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 6 cut(s) 161, 195, 528, 562, 1154, 1188
BciT130I CCWGG 2 cut(s) 790, 1316
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 1 cut(s) 1179
BfaI CTAG 2 cut(s) 1140, 1497
BfmI CTRYAG 2 cut(s) 897, 1427
BfoI RGCGCY 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 642
BisI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
BlsI GCNGC 6 cut(s) 47, 241, 244, 295, 308, 644
BmcAI AGTACT 1 cut(s) 1531
Bme1390I CCNGG 3 cut(s) 790, 1179, 1316
BmgT120I GGNCC 2 cut(s) 447, 623
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 3 cut(s) 790, 1179, 1316
BmsI GCATC 7 cut(s) 242, 316, 802, 1140, 1174, 1429, 1480
BpiI GAAGAC 2 cut(s) 510, 1429
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 2 cut(s) 455, 596
BpuEI CTTGAG 1 cut(s) 1097
BpuMI CCSGG 1 cut(s) 1179
BsaHI GRCGYC 1 cut(s) 944
BsaJI CCNNGG 2 cut(s) 513, 640
BsaWI WCCGGW 2 cut(s) 59, 1418
BsaXI ACNNNNNCTCC 2 cut(s) 1110, 1140
Bsc4I CCNNNNNNNGG 3 cut(s) 661, 939, 1418
Bse1I ACTGG 2 cut(s) 546, 1450
BseAI TCCGGA 1 cut(s) 1418
BseBI CCWGG 2 cut(s) 790, 1316
BseDI CCNNGG 2 cut(s) 513, 640
BseGI GGATG 5 cut(s) 120, 785, 793, 1305, 1495
BseLI CCNNNNNNNGG 3 cut(s) 661, 939, 1418
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 546, 1450
BseRI GAGGAG 2 cut(s) 58, 237
BseSI GKGCMC 1 cut(s) 1309
BseX3I CGGCCG 3 cut(s) 46, 291, 1175
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 1377
Bsh1236I CGCG 2 cut(s) 45, 642
Bsh1285I CGRYCG 4 cut(s) 49, 175, 294, 1178
BshFI GGCC 5 cut(s) 48, 293, 448, 624, 1177
BsiEI CGRYCG 4 cut(s) 49, 175, 294, 1178
BsiHKAI GWGCWC 1 cut(s) 1111
BsiSI CCGG 3 cut(s) 60, 1178, 1419
BslI CCNNNNNNNGG 3 cut(s) 661, 939, 1418
BsnI GGCC 5 cut(s) 48, 293, 448, 624, 1177
Bsp119I TTCGAA 2 cut(s) 455, 596
Bsp1286I GDGCHC 2 cut(s) 1111, 1309
Bsp13I TCCGGA 1 cut(s) 1418
Bsp143I GATC 4 cut(s) 300, 677, 1069, 1257
BspANI GGCC 5 cut(s) 48, 293, 448, 624, 1177
BspCNI CTCAG 1 cut(s) 293
BspEI TCCGGA 1 cut(s) 1418
BspFNI CGCG 2 cut(s) 45, 642
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 1431
BspPI GGATC 1 cut(s) 1252
BspQI GCTCTTC 1 cut(s) 487
BspT104I TTCGAA 2 cut(s) 455, 596
BsrBI CCGCTC 1 cut(s) 245
BsrI ACTGG 2 cut(s) 546, 1450
BssECI CCNNGG 2 cut(s) 513, 640
BssMI GATC 4 cut(s) 300, 677, 1069, 1257
BssNI GRCGYC 1 cut(s) 944
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 790, 1316
Bst4CI ACNGT 4 cut(s) 509, 958, 1286, 1328
Bst6I CTCTTC 2 cut(s) 487, 867
BstACI GRCGYC 1 cut(s) 944
BstBI TTCGAA 2 cut(s) 455, 596
BstC8I GCNNGC 1 cut(s) 1202
BstDEI CTNAG 4 cut(s) 153, 280, 649, 1097
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 5 cut(s) 120, 785, 793, 1305, 1495
BstFNI CGCG 2 cut(s) 45, 642
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 539
BstKTI GATC 4 cut(s) 303, 680, 1072, 1260
BstMBI GATC 4 cut(s) 300, 677, 1069, 1257
BstMCI CGRYCG 4 cut(s) 49, 175, 294, 1178
BstMWI GCNNNNNNNGC 3 cut(s) 221, 236, 642
BstNI CCWGG 2 cut(s) 790, 1316
BstSCI CCNGG 3 cut(s) 788, 1177, 1314
BstSFI CTRYAG 2 cut(s) 897, 1427
BstSLI GKGCMC 1 cut(s) 1309
BstUI CGCG 2 cut(s) 45, 642
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 510, 1429
BstXI CCANNNNNNTGG 1 cut(s) 1485
BstZI CGGCCG 3 cut(s) 46, 291, 1175
BsuRI GGCC 5 cut(s) 48, 293, 448, 624, 1177
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 5 cut(s) 120, 785, 793, 1305, 1495
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 4 cut(s) 486, 539, 1282, 1307
Cac8I GCNNGC 1 cut(s) 1202
CaiI CAGNNNCTG 2 cut(s) 437, 626
CfoI GCGC 2 cut(s) 215, 539
Cfr13I GGNCC 2 cut(s) 447, 623
Cfr42I CCGCGG 1 cut(s) 643
CseI GACGC 1 cut(s) 952
Csp6I GTAC 2 cut(s) 1466, 1530
CviAII CATG 9 cut(s) 524, 573, 681, 703, 1189, 1205, 1296, 1340, 1513
CviQI GTAC 2 cut(s) 1466, 1530
DdeI CTNAG 4 cut(s) 153, 280, 649, 1097
DpnI GATC 4 cut(s) 302, 679, 1071, 1259
DpnII GATC 4 cut(s) 300, 677, 1069, 1257
EaeI YGGCCR 3 cut(s) 46, 291, 1175
EagI CGGCCG 3 cut(s) 46, 291, 1175
Eam1104I CTCTTC 2 cut(s) 487, 867
EarI CTCTTC 2 cut(s) 487, 867
EciI GGCGGA 1 cut(s) 211
EclXI CGGCCG 3 cut(s) 46, 291, 1175
Eco130I CCWWGG 1 cut(s) 513
Eco52I CGGCCG 3 cut(s) 46, 291, 1175
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 2 cut(s) 788, 1314
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 9 cut(s) 527, 576, 684, 706, 1192, 1208, 1299, 1343, 1516
FatI CATG 9 cut(s) 523, 572, 680, 702, 1188, 1204, 1295, 1339, 1512
FauNDI CATATG 1 cut(s) 1277
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 1330
Fnu4HI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
FokI GGATG 5 cut(s) 107, 772, 780, 1312, 1502
Fsp4HI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
FspBI CTAG 2 cut(s) 1140, 1497
GlaI GCGC 2 cut(s) 214, 538
GluI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 5 cut(s) 48, 293, 448, 624, 1177
HapII CCGG 3 cut(s) 60, 1178, 1419
HgaI GACGC 1 cut(s) 952
HhaI GCGC 2 cut(s) 215, 539
Hin1I GRCGYC 1 cut(s) 944
Hin1II CATG 9 cut(s) 527, 576, 684, 706, 1192, 1208, 1299, 1343, 1516
Hin6I GCGC 2 cut(s) 213, 537
HinP1I GCGC 2 cut(s) 213, 537
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HpaI GTTAAC 1 cut(s) 1065
HpaII CCGG 3 cut(s) 60, 1178, 1419
HphI GGTGA 3 cut(s) 49, 596, 1267
Hpy166II GTNNAC 4 cut(s) 1065, 1145, 1293, 1331
Hpy188I TCNGA 5 cut(s) 194, 283, 333, 413, 1248
Hpy188III TCNNGA 7 cut(s) 19, 170, 317, 338, 425, 725, 1419
Hpy8I GTNNAC 4 cut(s) 1065, 1145, 1293, 1331
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 6 cut(s) 93, 706, 862, 1164, 1313, 1484
HpyCH4III ACNGT 4 cut(s) 509, 958, 1286, 1328
HpyCH4IV ACGT 3 cut(s) 312, 385, 1351
HpyCH4V TGCA 8 cut(s) 684, 916, 1021, 1200, 1339, 1358, 1429, 1442
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 236, 642
HpyF3I CTNAG 4 cut(s) 153, 280, 649, 1097
HpySE526I ACGT 3 cut(s) 312, 385, 1351
Hsp92I GRCGYC 1 cut(s) 944
Hsp92II CATG 9 cut(s) 527, 576, 684, 706, 1192, 1208, 1299, 1343, 1516
HspAI GCGC 2 cut(s) 213, 537
Kpn2I TCCGGA 1 cut(s) 1418
Ksp22I TGATCA 1 cut(s) 1069
KspAI GTTAAC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 4 cut(s) 300, 677, 1069, 1257
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 3 cut(s) 97, 250, 260
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 7 cut(s) 242, 316, 802, 1140, 1174, 1429, 1480
MaeI CTAG 2 cut(s) 1140, 1497
MaeII ACGT 3 cut(s) 312, 385, 1351
MaeIII GTNAC 5 cut(s) 76, 892, 952, 1280, 1322
MalI GATC 4 cut(s) 302, 679, 1071, 1259
MbiI CCGCTC 1 cut(s) 245
MboI GATC 4 cut(s) 300, 677, 1069, 1257
MboII GAAGA 5 cut(s) 474, 515, 884, 1407, 1434
MfeI CAATTG 1 cut(s) 1334
MhlI GDGCHC 2 cut(s) 1111, 1309
MluCI AATT 9 cut(s) 275, 367, 441, 592, 656, 720, 1037, 1193, 1334
MlyI GAGTC 6 cut(s) 24, 554, 704, 884, 1243, 1298
MmeI TCCRAC 1 cut(s) 64
MroI TCCGGA 1 cut(s) 1418
MseI TTAA 2 cut(s) 1005, 1064
MslI CAYNNNNRTG 2 cut(s) 467, 1298
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 3 cut(s) 60, 1178, 1419
MspR9I CCNGG 3 cut(s) 790, 1179, 1316
MunI CAATTG 1 cut(s) 1334
MvaI CCWGG 2 cut(s) 790, 1316
MvnI CGCG 2 cut(s) 45, 642
MwoI GCNNNNNNNGC 3 cut(s) 221, 236, 642
NciI CCSGG 1 cut(s) 1179
NdeI CATATG 1 cut(s) 1277
NdeII GATC 4 cut(s) 300, 677, 1069, 1257
NlaIII CATG 9 cut(s) 527, 576, 684, 706, 1192, 1208, 1299, 1343, 1516
NlaIV GGNNCC 1 cut(s) 64
NmeAIII GCCGAG 2 cut(s) 269, 1153
NmuCI GTSAC 1 cut(s) 1280
NspV TTCGAA 2 cut(s) 455, 596
PciSI GCTCTTC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PfeI GAWTC 6 cut(s) 334, 348, 428, 617, 716, 1208
PflMI CCANNNNNTGG 2 cut(s) 661, 939
PkrI GCNGC 6 cut(s) 47, 241, 244, 295, 308, 644
PleI GAGTC 6 cut(s) 23, 553, 703, 883, 1243, 1297
PpsI GAGTC 6 cut(s) 23, 553, 703, 883, 1243, 1297
Psp6I CCWGG 2 cut(s) 788, 1314
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 788, 1314
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 447, 623
PstI CTGCAG 1 cut(s) 1431
PstNI CAGNNNCTG 2 cut(s) 437, 626
RsaI GTAC 2 cut(s) 1467, 1531
RsaNI GTAC 2 cut(s) 1466, 1530
RseI CAYNNNNRTG 2 cut(s) 467, 1298
SacII CCGCGG 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 2 cut(s) 1005, 1064
SatI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
Sau3AI GATC 4 cut(s) 300, 677, 1069, 1257
Sau96I GGNCC 2 cut(s) 447, 623
ScaI AGTACT 1 cut(s) 1531
SchI GAGTC 6 cut(s) 24, 554, 704, 884, 1243, 1298
ScrFI CCNGG 3 cut(s) 790, 1179, 1316
SduI GDGCHC 2 cut(s) 1111, 1309
SfaNI GCATC 7 cut(s) 242, 316, 802, 1140, 1174, 1429, 1480
SfcI CTRYAG 2 cut(s) 897, 1427
Sfr303I CCGCGG 1 cut(s) 643
SfuI TTCGAA 2 cut(s) 455, 596
SgrBI CCGCGG 1 cut(s) 643
SmiMI CAYNNNNRTG 2 cut(s) 467, 1298
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
Sse9I AATT 9 cut(s) 275, 367, 441, 592, 656, 720, 1037, 1193, 1334
SspI AATATT 1 cut(s) 823
SspMI CTAG 2 cut(s) 1140, 1497
StyD4I CCNGG 3 cut(s) 788, 1177, 1314
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 4 cut(s) 509, 958, 1286, 1328
TaiI ACGT 3 cut(s) 315, 388, 1354
TaqI TCGA 7 cut(s) 171, 250, 299, 324, 339, 455, 596
TasI AATT 9 cut(s) 275, 367, 441, 592, 656, 720, 1037, 1193, 1334
TatI WGTACW 1 cut(s) 1529
TauI GCSGC 5 cut(s) 48, 242, 245, 296, 645
TfiI GAWTC 6 cut(s) 334, 348, 428, 617, 716, 1208
Tru1I TTAA 2 cut(s) 1005, 1064
Tru9I TTAA 2 cut(s) 1005, 1064
TscAI CASTG 4 cut(s) 493, 546, 1289, 1314
TseFI GTSAC 1 cut(s) 1280
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 1280
TspDTI ATGAA 8 cut(s) 75, 361, 516, 561, 774, 978, 1177, 1264
TspRI CASTG 4 cut(s) 493, 546, 1289, 1314
Van91I CCANNNNNTGG 2 cut(s) 661, 939
XapI RAATTY 3 cut(s) 367, 441, 1193
XmiI GTMKAC 1 cut(s) 1330
XspI CTAG 2 cut(s) 1140, 1497
ZrmI AGTACT 1 cut(s) 1531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.