Rmu_sc0000144.1_g000045

CST complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
OG0006351
Physical Location & Seq
Reverse (-)
201719 .. 204231
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1812 bp
atggaaagtgtgagagtcttgacaatcgcagacttactccaacgcggccgtttcctcaccggaacctcctctttcgttaccccttcatttgctccaaaatcaaacccctccatttctcccatcccctcaaatcctaaccctaatgccaccactaaggttctcccctctctcgaccgctttgccctcatcatcggaactataacactccccagcgccacctccgcctccgcttcaatcgccgccgctcctcgatgctcctacaacacttgcttccaattctcagacaactcggccgcctcgatctgctgcgacgttcttgatttcgatgctcggattctcgacaagagaatcaatgttctcgcttggaatttcattccattcaaacgtggcggtgggttcttggagattatcagatgggggtttcaggattcagttgctggaatttggccctgttcgaatatcatttctatggagttaggctcttccactgctaatgctaatgaagacagttccaaggctcgtcatggtgtgttcggcgcactggagtcggttagccctttctccattgtttcatgtagaacaggtgatagcaattcgaaaagcaacaaggctttggattcaggccccgcgacaagcctccgcggcttcttagtccaatttatggtttgtgagtgtagatcatgcagttcaaaggagtcaatcatggttttgaaggattcaattcaagaaagagatactcattcttttaccaaaccaatgtttgtgtattgttgcggttctgcttcatcctggcatcctgtatttacgaaacttgtgggaaatattgttgctatatcaggcttgaaaaagaagttggtttttatagggaaggaagagtctaaagtaatgtgtgtaactacaggaagttctgccttgcatttgagcagattgtccaagaaatggacgccgaaagttacagtaggtagaaagggaaatggggaagttggttcatatagagggagagttaaaggtgtgtatatgcaaggaatggttgtggaattggacaatgaggtgtggcttttgttaactgatcaactgcttactccaccacatagtcttagggctggtgctctcgtaagttttatggcttttattaatctggccttcaagtttttccctctactaccttttgaagtcttctttcaatttggcttttttgttgttgctaggaccaatgtaattgtggaatccttctctccaatagaaactcggtgtcatatagcctcacaatcacagagttccttggggaagttcatcgagtccttagcattttcttccagattatgggtattgctggttgcctcgtatttccggaaaaagtttgctggtatcttatctgagaaggaaattttgggctccaaacatttaatttggacggttgcaaggtgctaccagaagggaggattagttgagatgtttgctagttcacagatgccttcgtcaaagcatcaaactcggccgggagtattcatggaattttgcaagcatgattcctgtgcctgtggttgtgagccatacatagataatctgactctggtgatccccttgtcttttttcatatgtcactgtgagtccacatggatgagggcactgaacctggaaggtaacagtagacaattgcatgatgacaaacggtacagccgtcaattatgtgaagggagatcttatgttcagtctattagaaagatcttttcaagtcaagatataggcataactttggttggaagtttgaaggttagtggtcttgttaatggttatctattttctggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTC1_2

Protein Analysis

603

Amino Acids

66.31

Weight (kDa)

9.17

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTC1_2 PF15491 61 - 370 4.1e-95 CST, telomere maintenance, complex subunit CTC1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 661, 939, 1323
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 1651
AccII CGCG 3 cut(s) 45, 629, 642
AccIII TCCGGA 1 cut(s) 1350
AclWI GGATC 1 cut(s) 1573
AcoI YGGCCR 3 cut(s) 46, 291, 1496
AcsI RAATTY 4 cut(s) 367, 441, 1386, 1514
AcyI GRCGYC 1 cut(s) 944
AfaI GTAC 1 cut(s) 1676
AfiI CCNNNNNNNGG 3 cut(s) 661, 939, 1323
AjnI CCWGG 2 cut(s) 788, 1635
AjuI GAANNNNNNNTTGG 4 cut(s) 836, 868, 1373, 1405
Alw21I GWGCWC 1 cut(s) 1111
AlwI GGATC 1 cut(s) 1573
AlwNI CAGNNNCTG 1 cut(s) 437
Aor13HI TCCGGA 1 cut(s) 1350
AoxI GGCC 6 cut(s) 46, 291, 446, 622, 1140, 1496
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 4 cut(s) 367, 441, 1386, 1514
AseI ATTAAT 1 cut(s) 1134
AspLEI GCGC 2 cut(s) 215, 539
AspS9I GGNCC 3 cut(s) 447, 623, 1209
AsuC2I CCSGG 1 cut(s) 1500
AsuHPI GGTGA 3 cut(s) 49, 596, 1588
AsuII TTCGAA 2 cut(s) 455, 596
AvaII GGWCC 1 cut(s) 1209
BaeGI GKGCMC 1 cut(s) 1630
BaeI ACNNNNGTAYC 2 cut(s) 1666, 1699
BanII GRGCYC 1 cut(s) 1397
BbsI GAAGAC 2 cut(s) 510, 1168
Bbv12I GWGCWC 1 cut(s) 1111
BbvI GCAGC 1 cut(s) 293
BccI CCATC 2 cut(s) 128, 408
BceAI ACGGC 2 cut(s) 33, 1665
BcgI CGANNNNNNTGC 6 cut(s) 161, 195, 528, 562, 1475, 1509
BciT130I CCWGG 2 cut(s) 790, 1637
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 1 cut(s) 1500
BfaI CTAG 2 cut(s) 1206, 1461
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 642
BglII AGATCT 2 cut(s) 1700, 1725
BisI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
BlsI GCNGC 6 cut(s) 47, 241, 244, 295, 308, 644
Bme1390I CCNGG 3 cut(s) 790, 1500, 1637
Bme18I GGWCC 1 cut(s) 1209
BmgT120I GGNCC 3 cut(s) 447, 623, 1209
BmiI GGNNCC 3 cut(s) 64, 625, 1396
BmrFI CCNGG 3 cut(s) 790, 1500, 1637
BmsI GCATC 5 cut(s) 242, 316, 802, 1461, 1495
BpiI GAAGAC 2 cut(s) 510, 1168
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 1 cut(s) 563
Bpu10I CCTNAGC 1 cut(s) 1303
Bpu14I TTCGAA 2 cut(s) 455, 596
BpuMI CCSGG 1 cut(s) 1500
BsaHI GRCGYC 1 cut(s) 944
BsaJI CCNNGG 3 cut(s) 513, 640, 1281
BsaWI WCCGGW 2 cut(s) 59, 1350
BsaXI ACNNNNNCTCC 2 cut(s) 1431, 1461
Bsc4I CCNNNNNNNGG 3 cut(s) 661, 939, 1323
Bse1I ACTGG 1 cut(s) 546
BseAI TCCGGA 1 cut(s) 1350
BseBI CCWGG 2 cut(s) 790, 1637
BseDI CCNNGG 3 cut(s) 513, 640, 1281
BseGI GGATG 4 cut(s) 120, 785, 793, 1626
BseLI CCNNNNNNNGG 3 cut(s) 661, 939, 1323
BseMII CTCAG 2 cut(s) 294, 1368
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 2 cut(s) 58, 237
BseSI GKGCMC 1 cut(s) 1630
BseX3I CGGCCG 3 cut(s) 46, 291, 1496
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 3 cut(s) 45, 629, 642
Bsh1285I CGRYCG 4 cut(s) 49, 175, 294, 1499
BshFI GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
BsiEI CGRYCG 4 cut(s) 49, 175, 294, 1499
BsiHKAI GWGCWC 1 cut(s) 1111
BsiSI CCGG 3 cut(s) 60, 1351, 1499
BslI CCNNNNNNNGG 3 cut(s) 661, 939, 1323
BsnI GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
Bsp119I TTCGAA 2 cut(s) 455, 596
Bsp1286I GDGCHC 3 cut(s) 1111, 1397, 1630
Bsp13I TCCGGA 1 cut(s) 1350
Bsp143I GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
BspANI GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
BspCNI CTCAG 2 cut(s) 293, 1369
BspEI TCCGGA 1 cut(s) 1350
BspFNI CGCG 3 cut(s) 45, 629, 642
BspLI GGNNCC 3 cut(s) 64, 625, 1396
BspPI GGATC 1 cut(s) 1573
BspQI GCTCTTC 1 cut(s) 487
BspT104I TTCGAA 2 cut(s) 455, 596
BsrBI CCGCTC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 513, 640, 1281
BssMI GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
BssNI GRCGYC 1 cut(s) 944
BssT1I CCWWGG 2 cut(s) 513, 1281
Bst2UI CCWGG 2 cut(s) 790, 1637
Bst4CI ACNGT 6 cut(s) 509, 958, 1417, 1607, 1649, 1674
Bst6I CTCTTC 2 cut(s) 487, 867
BstACI GRCGYC 1 cut(s) 944
BstBI TTCGAA 2 cut(s) 455, 596
BstC8I GCNNGC 1 cut(s) 1523
BstDEI CTNAG 6 cut(s) 153, 280, 649, 1097, 1303, 1377
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 4 cut(s) 120, 785, 793, 1626
BstFNI CGCG 3 cut(s) 45, 629, 642
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 539
BstKTI GATC 6 cut(s) 303, 680, 1072, 1581, 1703, 1728
BstMBI GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
BstMCI CGRYCG 4 cut(s) 49, 175, 294, 1499
BstMWI GCNNNNNNNGC 3 cut(s) 221, 236, 642
BstNI CCWGG 2 cut(s) 790, 1637
BstSCI CCNGG 3 cut(s) 788, 1498, 1635
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 1630
BstUI CGCG 3 cut(s) 45, 629, 642
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 510, 1168
BstX2I RGATCY 2 cut(s) 1700, 1725
BstYI RGATCY 2 cut(s) 1700, 1725
BstZI CGGCCG 3 cut(s) 46, 291, 1496
BsuRI GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 4 cut(s) 120, 785, 793, 1626
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 4 cut(s) 486, 539, 1603, 1628
Cac8I GCNNGC 1 cut(s) 1523
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 2 cut(s) 215, 539
Cfr13I GGNCC 3 cut(s) 447, 623, 1209
Cfr42I CCGCGG 1 cut(s) 643
CseI GACGC 1 cut(s) 952
Csp6I GTAC 1 cut(s) 1675
CviAII CATG 8 cut(s) 524, 573, 681, 703, 1510, 1526, 1617, 1661
CviQI GTAC 1 cut(s) 1675
DdeI CTNAG 6 cut(s) 153, 280, 649, 1097, 1303, 1377
DpnI GATC 6 cut(s) 302, 679, 1071, 1580, 1702, 1727
DpnII GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
EaeI YGGCCR 3 cut(s) 46, 291, 1496
EagI CGGCCG 3 cut(s) 46, 291, 1496
Eam1104I CTCTTC 2 cut(s) 487, 867
EarI CTCTTC 2 cut(s) 487, 867
EciI GGCGGA 1 cut(s) 211
EclXI CGGCCG 3 cut(s) 46, 291, 1496
Eco130I CCWWGG 2 cut(s) 513, 1281
Eco24I GRGCYC 1 cut(s) 1397
Eco47I GGWCC 1 cut(s) 1209
Eco52I CGGCCG 3 cut(s) 46, 291, 1496
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 2 cut(s) 788, 1635
EcoT14I CCWWGG 2 cut(s) 513, 1281
EcoT38I GRGCYC 1 cut(s) 1397
ErhI CCWWGG 2 cut(s) 513, 1281
FaeI CATG 8 cut(s) 527, 576, 684, 706, 1513, 1529, 1620, 1664
FatI CATG 8 cut(s) 523, 572, 680, 702, 1509, 1525, 1616, 1660
FauI CCCGC 1 cut(s) 634
FauNDI CATATG 1 cut(s) 1598
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 1651
Fnu4HI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
FokI GGATG 4 cut(s) 107, 772, 780, 1633
FriOI GRGCYC 1 cut(s) 1397
Fsp4HI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
FspBI CTAG 2 cut(s) 1206, 1461
GlaI GCGC 2 cut(s) 214, 538
GluI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 6 cut(s) 48, 293, 448, 624, 1142, 1498
HapII CCGG 3 cut(s) 60, 1351, 1499
HgaI GACGC 1 cut(s) 952
HhaI GCGC 2 cut(s) 215, 539
Hin1I GRCGYC 1 cut(s) 944
Hin1II CATG 8 cut(s) 527, 576, 684, 706, 1513, 1529, 1620, 1664
Hin6I GCGC 2 cut(s) 213, 537
HinP1I GCGC 2 cut(s) 213, 537
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HpaI GTTAAC 1 cut(s) 1065
HpaII CCGG 3 cut(s) 60, 1351, 1499
HphI GGTGA 3 cut(s) 49, 596, 1588
Hpy166II GTNNAC 4 cut(s) 1065, 1466, 1614, 1652
Hpy188I TCNGA 6 cut(s) 194, 283, 333, 413, 1378, 1569
Hpy188III TCNNGA 9 cut(s) 19, 170, 317, 338, 425, 725, 1317, 1351, 1739
Hpy8I GTNNAC 4 cut(s) 1065, 1466, 1614, 1652
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 6 cut(s) 509, 958, 1417, 1607, 1649, 1674
HpyCH4IV ACGT 2 cut(s) 312, 385
HpyCH4V TGCA 6 cut(s) 684, 916, 1021, 1421, 1521, 1660
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 236, 642
HpyF3I CTNAG 6 cut(s) 153, 280, 649, 1097, 1303, 1377
HpySE526I ACGT 2 cut(s) 312, 385
Hsp92I GRCGYC 1 cut(s) 944
Hsp92II CATG 8 cut(s) 527, 576, 684, 706, 1513, 1529, 1620, 1664
HspAI GCGC 2 cut(s) 213, 537
Kpn2I TCCGGA 1 cut(s) 1350
Ksp22I TGATCA 1 cut(s) 1069
KspAI GTTAAC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 4 cut(s) 97, 250, 260, 1400
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 5 cut(s) 242, 316, 802, 1461, 1495
MaeI CTAG 2 cut(s) 1206, 1461
MaeII ACGT 2 cut(s) 312, 385
MaeIII GTNAC 5 cut(s) 76, 892, 952, 1601, 1643
MalI GATC 6 cut(s) 302, 679, 1071, 1580, 1702, 1727
MbiI CCGCTC 1 cut(s) 245
MboI GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
MboII GAAGA 5 cut(s) 474, 515, 884, 1168, 1305
MfeI CAATTG 1 cut(s) 1655
MflI RGATCY 2 cut(s) 1700, 1725
MhlI GDGCHC 3 cut(s) 1111, 1397, 1630
MlyI GAGTC 7 cut(s) 24, 554, 704, 884, 1307, 1564, 1619
MmeI TCCRAC 2 cut(s) 64, 1741
MroI TCCGGA 1 cut(s) 1350
MseI TTAA 5 cut(s) 1005, 1064, 1134, 1406, 1788
MslI CAYNNNNRTG 2 cut(s) 467, 1619
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 3 cut(s) 60, 1351, 1499
MspR9I CCNGG 3 cut(s) 790, 1500, 1637
MunI CAATTG 1 cut(s) 1655
MvaI CCWGG 2 cut(s) 790, 1637
MvnI CGCG 3 cut(s) 45, 629, 642
MwoI GCNNNNNNNGC 3 cut(s) 221, 236, 642
NciI CCSGG 1 cut(s) 1500
NdeI CATATG 1 cut(s) 1598
NdeII GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
NlaIII CATG 8 cut(s) 527, 576, 684, 706, 1513, 1529, 1620, 1664
NlaIV GGNNCC 3 cut(s) 64, 625, 1396
NmeAIII GCCGAG 2 cut(s) 269, 1474
NmuCI GTSAC 1 cut(s) 1601
NspV TTCGAA 2 cut(s) 455, 596
PciSI GCTCTTC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 2 cut(s) 296, 1678
PfeI GAWTC 7 cut(s) 334, 348, 428, 617, 716, 1226, 1529
PflMI CCANNNNNTGG 3 cut(s) 661, 939, 1323
PkrI GCNGC 6 cut(s) 47, 241, 244, 295, 308, 644
PleI GAGTC 7 cut(s) 23, 553, 703, 883, 1306, 1564, 1618
PpsI GAGTC 7 cut(s) 23, 553, 703, 883, 1306, 1564, 1618
PshBI ATTAAT 1 cut(s) 1134
Psp6I CCWGG 2 cut(s) 788, 1635
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 788, 1635
PspN4I GGNNCC 3 cut(s) 64, 625, 1396
PspPI GGNCC 3 cut(s) 447, 623, 1209
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 1700, 1725
RsaI GTAC 1 cut(s) 1676
RsaNI GTAC 1 cut(s) 1675
RseI CAYNNNNRTG 2 cut(s) 467, 1619
SacII CCGCGG 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 5 cut(s) 1005, 1064, 1134, 1406, 1788
SatI GCNGC 6 cut(s) 46, 240, 243, 294, 307, 643
Sau3AI GATC 6 cut(s) 300, 677, 1069, 1578, 1700, 1725
Sau96I GGNCC 3 cut(s) 447, 623, 1209
SchI GAGTC 7 cut(s) 24, 554, 704, 884, 1307, 1564, 1619
ScrFI CCNGG 3 cut(s) 790, 1500, 1637
SduI GDGCHC 3 cut(s) 1111, 1397, 1630
SfaNI GCATC 5 cut(s) 242, 316, 802, 1461, 1495
SfcI CTRYAG 1 cut(s) 897
Sfr303I CCGCGG 1 cut(s) 643
SfuI TTCGAA 2 cut(s) 455, 596
SgrBI CCGCGG 1 cut(s) 643
SinI GGWCC 1 cut(s) 1209
SmiMI CAYNNNNRTG 2 cut(s) 467, 1619
SspI AATATT 1 cut(s) 823
SspMI CTAG 2 cut(s) 1206, 1461
StyD4I CCNGG 3 cut(s) 788, 1498, 1635
StyI CCWWGG 2 cut(s) 513, 1281
TaaI ACNGT 6 cut(s) 509, 958, 1417, 1607, 1649, 1674
TaiI ACGT 2 cut(s) 315, 388
TaqI TCGA 8 cut(s) 171, 250, 299, 324, 339, 455, 596, 1296
TauI GCSGC 5 cut(s) 48, 242, 245, 296, 645
TfiI GAWTC 7 cut(s) 334, 348, 428, 617, 716, 1226, 1529
Tru1I TTAA 5 cut(s) 1005, 1064, 1134, 1406, 1788
Tru9I TTAA 5 cut(s) 1005, 1064, 1134, 1406, 1788
TscAI CASTG 4 cut(s) 493, 546, 1610, 1635
TseFI GTSAC 1 cut(s) 1601
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 1601
TspDTI ATGAA 9 cut(s) 75, 361, 516, 561, 774, 978, 1282, 1498, 1585
TspRI CASTG 4 cut(s) 493, 546, 1610, 1635
Van91I CCANNNNNTGG 3 cut(s) 661, 939, 1323
VpaK11BI GGWCC 1 cut(s) 1209
VspI ATTAAT 1 cut(s) 1134
XapI RAATTY 4 cut(s) 367, 441, 1386, 1514
XcmI CCANNNNNNNNNTGG 1 cut(s) 1219
XmiI GTMKAC 1 cut(s) 1651
XspI CTAG 2 cut(s) 1206, 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.