Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000223.1

Orthogroup ID

OG0005589

Physical Location & Seq

Genomic Coordinates Forward (+)

28637 .. 33896

Gene Structure 5260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000223.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2637 bp

atggagattgaagcagaaaacccgcttccggagaaagagagcaaacgggtcgggcacagcggcccgctagtgaccagcagcaagatgaggagcgacagcaacagaagcgcaaggttcaaagaagacgatcagtgctatgtggaagtgacactggatgtttgcgacgacgatacctttgtgcttcggaacatcagaggagctgaacctgagtcgacgtcagcaaggctagagagaagaccatctcttgcttctcaactctcttttaaactcaagaaagtctcgcatgaactgaagcgcatgaaatcttcattgagcttcaagaagggcgacaggcccaccaagcccggtgttgctcgtgcccttaagggactcaagctcatgaccaaaaatgtgtgcagtgaaggttggccagagatcgaaataaggttttatgaattggccgtcgatggaactcttccaaaatcggtcttcggtcaatgcatagggatgaaagagtcaagtgagtttgcttgcgaagtattcgatgcattggctcgtcggagaggaataacatcgtgttgtgtgaccaaggaagagttgagagaattttgggaacaaatttcagatcacagcttcaatgccaggcttcaaaccttctttgacatggtagataaaaatgcagatggtcgaatctctgaagaagaggtgaaagagattattaccttaagtgcctctgctaataagctgtcgaaaattctagaacaagctgaggaatatgcagcattgattatggaagagcttgatcaagacaacattggatatattgatttgtacaacttggaaatgctacttctttcgggcccaacccaatcttcgaacctggaaacagacagccacattcagagccggttgctaagtgaaaagctggttccgaccaaagagcacaaccctataaggcggtggtaccggcggctgtcctactttgttgaggataattggaggcggatttgggtcattgtgctatggcttttgatctgcatgggcctctttgcttggaaattcattcagtatagacatagggaggtattccatgtaatgggctattgtgtatgcattgccaaaggtggagctgagaccctgaagtttaacatggccctgattcttctaccagtatgtagaaatacaattacttggctaagaagcaagaccaagttaggaggggtagttccatttgatgacaatatcaattttcataaggtgatcgcgtttggaattgcagttggggttggtctccatgctggttcccatcttacatgcgacttccctaaactactacactctaccaatgatcaatacgacaagatgaagccatttttcggccaaaaacgacccaaggactactggtggtttgtgaagggaaccgagggctggaccggggtggttatggtggcactaatgctagttgcatacacactggctcaaccttggtttcgtcgcaaccgacttagaaaccttcctaaaaccctaaagaaacttactgggttcaatgcgttttggtactcccatcacctctttaccattgtgtacatcctctttattatccatggatactttctctacctctccaagaactgggacaagaaaacaacatggatgtatctggctttcccagtaataatgtatgcatgtgagcgtttgcttcgggctttcaggtctggatatgaatcagtgaagatcttaaaggtcgctgtttacccgggaaacgtattggcactccatatgtctaaaccacacagattaaaatataccagtggacagtacatttacataaattgttctgctatttccccatttcaatggcatccattctcaattacttcagctcccggagacgactatctaagcgttcatattcgcacattgggtgattggacatctcagctcaaatacattttctctcaggtttgccaacgtcctcctatagaacacagtggccttctaagagctgatattgaacaatccaatatccaacccaggatgccaagacttcttattgatggtccatatggtgcaccggcacaagactacaaaaactacgaagttcttctacttgttggacttggaattggagcaactccattaataagcatactcaaagatgtgcttaacaacattaagcgacaaaaagaactagaagctcaaatgttggtggaaaatggtgttaagagaaagtctccttttgcaacaaaacgagcttatttctactggatcacaagagagcaaggctcgtttgagtggtttaggggtgtgatgaatgaggtcgcagaaaatgacctcgacggcgtgattgagctgcacaactactgcaccagtgtttatgaagaaggagatgctagatcagctttgattactatgcttcagtctataaaccatgccaagaatggtgtggatgtagtttcaggaacgagggtgaagacgcattttgctagaccgaattggcgtaatgtttttaagcatgtggcagttaagcaccctgatcaaaaagttggtgtgttttattgtggtgcacatggattggttggggagttaaagaggttagctcaagatttttcgagaaaaactgagaccaagtttgatttccataaagagaacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009845 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0032501 GO:0032502 GO:0043167 GO:0043169 GO:0043621 GO:0044464 GO:0046872 GO:0048856 GO:0050664 GO:0050896 GO:0055114 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

EF-hand_6 FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

878

Amino Acids

101.09

Weight (kDa)

9.09

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09090 AT1G09090
fragaria_vesca	FvH4_6g06490
prunus_persica	Prupe.6G321500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0455621 RchiOBHm_Chr3g0455641
rosa_laevigata	RLG00000025344 RLG00000025346
rosa_multiflora	Rmu_sc0000223.1_g000005 Rmu_sc0002883.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052210 Rroxscaffold_5G00351700 Rroxscaffold_6G00423640 Rroxscaffold_6G00423670 Rroxscaffold_6G00424140 Rroxscaffold_6G00424160
rosa_rugosa	Rorug03G0008800 Rorug03G0008900
rosa_samantha	Rh3AG068200 Rh3AG068400 Rh3BG070800 Rh3BG070900 Rh3CG069100 Rh3CG069200 Rh3DG070700 Rh3DG070800
rosa_wichuraiana	Rw3G005470 Rw3G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
Acc65I	GGTACC	1 cut(s)	942
AccB1I	GGYRCC	1 cut(s)	942
AccB7I	CCANNNNNTGG	2 cut(s)	1075, 1611
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	1244
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	6 cut(s)	23, 60, 65, 937, 949, 982
AclWI	GGATC	1 cut(s)	2255
AcoI	YGGCCR	3 cut(s)	407, 438, 1357
AcsI	RAATTY	4 cut(s)	584, 597, 732, 1037
AcuI	CTGAAG	5 cut(s)	311, 696, 1139, 1842, 2381
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	5 cut(s)	812, 944, 1538, 1565, 1799
AfiI	CCNNNNNNNGG	5 cut(s)	28, 1075, 1355, 1407, 1611
AflII	CTTAAG	2 cut(s)	362, 703
AgsI	TTSAA	8 cut(s)	11, 118, 319, 616, 629, 1525, 1835, 1994
AjnI	CCWGG	3 cut(s)	620, 858, 2012
AjuI	GAANNNNNNNTTGG	4 cut(s)	835, 867, 2600, 2632
AloI	GAACNNNNNNTCC	2 cut(s)	1188, 1220
Alw21I	GWGCWC	3 cut(s)	924, 2053, 2548
Alw26I	GTCTC	6 cut(s)	283, 1106, 1274, 1863, 2217, 2597
Alw44I	GTGCAC	2 cut(s)	2049, 2544
AlwI	GGATC	1 cut(s)	2255
Ama87I	CYCGRG	1 cut(s)	1735
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	9 cut(s)	61, 332, 407, 438, 838, 1021, 1131, 1357, 1972
ApaI	GGGCCC	1 cut(s)	842
ApaLI	GTGCAC	2 cut(s)	2049, 2544
ApeKI	GCWGC	3 cut(s)	78, 758, 2332
ApoI	RAATTY	4 cut(s)	584, 597, 732, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AseI	ATTAAT	1 cut(s)	2120
Asp700I	GAANNNNTTC	1 cut(s)	2082
Asp718I	GGTACC	1 cut(s)	942
AspLEI	GCGC	2 cut(s)	110, 297
AspS9I	GGNCC	8 cut(s)	62, 333, 838, 839, 1021, 1132, 1410, 2039
AsuC2I	CCSGG	5 cut(s)	345, 1414, 1736, 1737, 1866
AsuHPI	GGTGA	5 cut(s)	697, 1249, 1538, 1916, 2461
AsuII	TTCGAA	1 cut(s)	854
AvaI	CYCGRG	1 cut(s)	1735
AvaII	GGWCC	2 cut(s)	1410, 2039
BaeGI	GKGCMC	5 cut(s)	57, 361, 842, 2053, 2548
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BalI	TGGCCA	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	942
BanII	GRGCYC	1 cut(s)	842
BarI	GAAGNNNNNNTAC	2 cut(s)	2070, 2102
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	4 cut(s)	129, 241, 460, 2459
Bbv12I	GWGCWC	3 cut(s)	924, 2053, 2548
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	90, 770, 2319
BccI	CCATC	6 cut(s)	247, 440, 656, 1293, 1551, 2030
BceAI	ACGGC	2 cut(s)	425, 2335
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	3 cut(s)	622, 860, 2014
BciVI	GTATCC	1 cut(s)	1580
BclI	TGATCA	3 cut(s)	781, 1327, 2515
BcnI	CCSGG	5 cut(s)	345, 1414, 1736, 1737, 1866
BcoDI	GTCTC	6 cut(s)	283, 1106, 1274, 1863, 2217, 2597
BfaI	CTAG	7 cut(s)	68, 227, 737, 1439, 2171, 2373, 2466
BfmI	CTRYAG	1 cut(s)	1959
BfrI	CTTAAG	2 cut(s)	362, 703
BfuI	GTATCC	1 cut(s)	1580
BglII	AGATCT	1 cut(s)	1713
BisI	GCNGC	5 cut(s)	61, 79, 759, 950, 2333
BlsI	GCNGC	5 cut(s)	62, 80, 760, 951, 2334
Bme1390I	CCNGG	8 cut(s)	345, 622, 860, 1414, 1736, 1737, 1866, 2014
Bme18I	GGWCC	2 cut(s)	1410, 2039
BmeT110I	CYCGRG	1 cut(s)	1735
BmgT120I	GGNCC	8 cut(s)	62, 333, 838, 839, 1021, 1132, 1410, 2039
BmiI	GGNNCC	5 cut(s)	840, 909, 944, 1282, 1399
BmrFI	CCNGG	8 cut(s)	345, 622, 860, 1414, 1736, 1737, 1866, 2014
BmrI	ACTGGG	3 cut(s)	1527, 1621, 1643
BmsI	GCATC	4 cut(s)	514, 1849, 2007, 2359
BmuI	ACTGGG	3 cut(s)	1527, 1621, 1643
BpiI	GAAGAC	4 cut(s)	129, 241, 460, 2459
BplI	GAGNNNNNCTC	6 cut(s)	2197, 2229, 2249, 2281, 2563, 2595
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	854
BpuEI	CTTGAG	3 cut(s)	254, 356, 2565
BpuMI	CCSGG	5 cut(s)	345, 1414, 1736, 1737, 1866
BsaBI	GATNNNNATC	1 cut(s)	1702
BsaHI	GRCGYC	1 cut(s)	215
BsaI	GGTCTC	3 cut(s)	1106, 1274, 2597
BsaJI	CCNNGG	8 cut(s)	567, 1371, 1401, 1413, 1463, 1582, 1735, 2012
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	4 cut(s)	1188, 1218, 1846, 1876
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 1075, 1355, 1407, 1611
Bse118I	RCCGGY	3 cut(s)	885, 945, 2053
Bse3DI	GCAATG	1 cut(s)	1092
Bse8I	GATNNNNATC	1 cut(s)	1702
BseAI	TCCGGA	1 cut(s)	28
BseBI	CCWGG	3 cut(s)	622, 860, 2014
BseDI	CCNNGG	8 cut(s)	567, 1371, 1401, 1413, 1463, 1582, 1735, 2012
BseGI	GGATG	7 cut(s)	160, 492, 1566, 1638, 1840, 2022, 2434
BseJI	GATNNNNATC	1 cut(s)	1702
BseLI	CCNNNNNNNGG	5 cut(s)	28, 1075, 1355, 1407, 1611
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	6 cut(s)	198, 738, 1101, 1931, 1952, 2592
BseRI	GAGGAG	2 cut(s)	103, 210
BseSI	GKGCMC	5 cut(s)	57, 361, 842, 2053, 2548
BseXI	GCAGC	3 cut(s)	90, 770, 2319
BsgI	GTGCAG	3 cut(s)	415, 2318, 2329
Bsh1236I	CGCG	1 cut(s)	1244
BshFI	GGCC	9 cut(s)	63, 334, 409, 440, 840, 1023, 1133, 1359, 1974
BshNI	GGYRCC	1 cut(s)	942
BsiHKAI	GWGCWC	3 cut(s)	924, 2053, 2548
BsiHKCI	CYCGRG	1 cut(s)	1735
BsiSI	CCGG	8 cut(s)	29, 345, 886, 946, 1413, 1736, 1866, 2054
BslFI	GGGAC	2 cut(s)	381, 1628
BslI	CCNNNNNNNGG	5 cut(s)	28, 1075, 1355, 1407, 1611
BsmAI	GTCTC	6 cut(s)	283, 1106, 1274, 1863, 2217, 2597
BsmBI	CGTCTC	1 cut(s)	1863
BsmFI	GGGAC	2 cut(s)	381, 1628
BsnI	GGCC	9 cut(s)	63, 334, 409, 440, 840, 1023, 1133, 1359, 1974
Bso31I	GGTCTC	3 cut(s)	1106, 1274, 2597
BsoBI	CYCGRG	1 cut(s)	1735
Bsp119I	TTCGAA	1 cut(s)	854
Bsp120I	GGGCCC	1 cut(s)	838
Bsp1286I	GDGCHC	6 cut(s)	57, 361, 842, 924, 2053, 2548
Bsp13I	TCCGGA	1 cut(s)	28
Bsp1407I	TGTACA	2 cut(s)	810, 1563
Bsp19I	CCATGG	1 cut(s)	1582
BspACI	CCGC	6 cut(s)	23, 60, 65, 937, 949, 982
BspANI	GGCC	9 cut(s)	63, 334, 409, 440, 840, 1023, 1133, 1359, 1974
BspCNI	CTCAG	6 cut(s)	199, 739, 1102, 1930, 1951, 2593
BspEI	TCCGGA	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	1244
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	5 cut(s)	840, 909, 944, 1282, 1399
BspPI	GGATC	1 cut(s)	2255
BspQI	GCTCTTC	1 cut(s)	768
BspT104I	TTCGAA	1 cut(s)	854
BspT107I	GGYRCC	1 cut(s)	942
BspTI	CTTAAG	2 cut(s)	362, 703
BspTNI	GGTCTC	3 cut(s)	1106, 1274, 2597
BsrDI	GCAATG	1 cut(s)	1092
BsrFI	RCCGGY	3 cut(s)	885, 945, 2053
BsrGI	TGTACA	2 cut(s)	810, 1563
BssAI	RCCGGY	3 cut(s)	885, 945, 2053
BssECI	CCNNGG	8 cut(s)	567, 1371, 1401, 1413, 1463, 1582, 1735, 2012
BssNI	GRCGYC	1 cut(s)	215
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	4 cut(s)	567, 1371, 1463, 1582
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	3 cut(s)	622, 860, 2014
Bst4CI	ACNGT	2 cut(s)	1797, 1970
Bst6I	CTCTTC	4 cut(s)	459, 567, 675, 768
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	2 cut(s)	362, 703
BstAUI	TGTACA	2 cut(s)	810, 1563
BstBI	TTCGAA	1 cut(s)	854
BstC8I	GCNNGC	2 cut(s)	65, 511
BstDSI	CCRYGG	1 cut(s)	1582
BstF5I	GGATG	7 cut(s)	160, 492, 1566, 1638, 1840, 2022, 2434
BstFNI	CGCG	1 cut(s)	1244
BstHHI	GCGC	2 cut(s)	110, 297
BstMAI	GTCTC	6 cut(s)	283, 1106, 1274, 1863, 2217, 2597
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 340, 2378
BstNI	CCWGG	3 cut(s)	622, 860, 2014
BstNSI	RCATGY	3 cut(s)	1296, 1668, 2498
BstSCI	CCNGG	8 cut(s)	343, 620, 858, 1412, 1734, 1735, 1864, 2012
BstSFI	CTRYAG	1 cut(s)	1959
BstSLI	GKGCMC	5 cut(s)	57, 361, 842, 2053, 2548
BstUI	CGCG	1 cut(s)	1244
BstV1I	GCAGC	3 cut(s)	90, 770, 2319
BstV2I	GAAGAC	4 cut(s)	129, 241, 460, 2459
BstX2I	RGATCY	1 cut(s)	1713
BstXI	CCANNNNNNTGG	1 cut(s)	1836
BstYI	RGATCY	1 cut(s)	1713
BsuI	GTATCC	1 cut(s)	1580
BsuRI	GGCC	9 cut(s)	63, 334, 409, 440, 840, 1023, 1133, 1359, 1974
BtgI	CCRYGG	1 cut(s)	1582
BtsCI	GGATG	7 cut(s)	160, 492, 1566, 1638, 1840, 2022, 2434
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	8 cut(s)	137, 149, 403, 1451, 1713, 1795, 1975, 2356
Cac8I	GCNNGC	2 cut(s)	65, 511
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	2 cut(s)	110, 297
Cfr10I	RCCGGY	3 cut(s)	885, 945, 2053
Cfr13I	GGNCC	8 cut(s)	62, 333, 838, 839, 1021, 1132, 1410, 2039
Cfr9I	CCCGGG	1 cut(s)	1735
CseI	GACGC	1 cut(s)	2464
Csp6I	GTAC	5 cut(s)	811, 943, 1537, 1564, 1798
CviQI	GTAC	5 cut(s)	811, 943, 1537, 1564, 1798
DraI	TTTAAA	1 cut(s)	265
EaeI	YGGCCR	3 cut(s)	407, 438, 1357
Eam1104I	CTCTTC	4 cut(s)	459, 567, 675, 768
EarI	CTCTTC	4 cut(s)	459, 567, 675, 768
EciI	GGCGGA	1 cut(s)	997
Eco130I	CCWWGG	4 cut(s)	567, 1371, 1463, 1582
Eco24I	GRGCYC	1 cut(s)	842
Eco31I	GGTCTC	3 cut(s)	1106, 1274, 2597
Eco47I	GGWCC	2 cut(s)	1410, 2039
Eco57I	CTGAAG	5 cut(s)	311, 696, 1139, 1842, 2381
Eco88I	CYCGRG	1 cut(s)	1735
EcoRII	CCWGG	3 cut(s)	620, 858, 2012
EcoT14I	CCWWGG	4 cut(s)	567, 1371, 1463, 1582
EcoT22I	ATGCAT	4 cut(s)	482, 529, 1094, 1666
EcoT38I	GRGCYC	1 cut(s)	842
ErhI	CCWWGG	4 cut(s)	567, 1371, 1463, 1582
Esp3I	CGTCTC	1 cut(s)	1863
FalI	AAGNNNNNCTT	2 cut(s)	2127, 2159
FaqI	GGGAC	2 cut(s)	381, 1628
FauI	CCCGC	2 cut(s)	30, 72
FauNDI	CATATG	2 cut(s)	1758, 2044
FbaI	TGATCA	3 cut(s)	781, 1327, 2515
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	5 cut(s)	61, 79, 759, 950, 2333
FokI	GGATG	7 cut(s)	167, 499, 1553, 1645, 1827, 2029, 2441
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	5 cut(s)	61, 79, 759, 950, 2333
FspBI	CTAG	7 cut(s)	68, 227, 737, 1439, 2171, 2373, 2466
GlaI	GCGC	2 cut(s)	109, 296
GluI	GCNGC	5 cut(s)	61, 79, 759, 950, 2333
HaeIII	GGCC	9 cut(s)	63, 334, 409, 440, 840, 1023, 1133, 1359, 1974
HapII	CCGG	8 cut(s)	29, 345, 886, 946, 1413, 1736, 1866, 2054
HgaI	GACGC	1 cut(s)	2464
HhaI	GCGC	2 cut(s)	110, 297
Hin1I	GRCGYC	1 cut(s)	215
Hin6I	GCGC	2 cut(s)	108, 295
HinP1I	GCGC	2 cut(s)	108, 295
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	6 cut(s)	209, 369, 494, 669, 1138, 1703
HpaII	CCGG	8 cut(s)	29, 345, 886, 946, 1413, 1736, 1866, 2054
HphI	GGTGA	5 cut(s)	697, 1249, 1538, 1916, 2461
Hpy166II	GTNNAC	6 cut(s)	213, 1564, 1732, 1793, 2051, 2546
Hpy188I	TCNGA	7 cut(s)	186, 194, 540, 604, 676, 882, 912
Hpy8I	GTNNAC	6 cut(s)	213, 1564, 1732, 1793, 2051, 2546
Hpy99I	CGWCG	7 cut(s)	167, 170, 217, 446, 540, 1476, 2321
HpyAV	CCTTC	7 cut(s)	316, 395, 643, 1387, 1502, 1985, 2357
HpyCH4III	ACNGT	2 cut(s)	1797, 1970
HpyCH4IV	ACGT	3 cut(s)	215, 1743, 1951
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 340, 2378
HpySE526I	ACGT	3 cut(s)	215, 1743, 1951
Hsp92I	GRCGYC	1 cut(s)	215
HspAI	GCGC	2 cut(s)	108, 295
Kpn2I	TCCGGA	1 cut(s)	28
KpnI	GGTACC	1 cut(s)	946
Ksp22I	TGATCA	3 cut(s)	781, 1327, 2515
LguI	GCTCTTC	1 cut(s)	768
LmnI	GCTCC	5 cut(s)	90, 197, 1106, 1867, 2108
Lsp1109I	GCAGC	3 cut(s)	90, 770, 2319
LweI	GCATC	4 cut(s)	514, 1849, 2007, 2359
MaeI	CTAG	7 cut(s)	68, 227, 737, 1439, 2171, 2373, 2466
MaeII	ACGT	3 cut(s)	215, 1743, 1951
MaeIII	GTNAC	3 cut(s)	70, 145, 562
MflI	RGATCY	1 cut(s)	1713
MhlI	GDGCHC	6 cut(s)	57, 361, 842, 924, 2053, 2548
MlsI	TGGCCA	1 cut(s)	409
MluNI	TGGCCA	1 cut(s)	409
MlyI	GAGTC	3 cut(s)	218, 363, 503
MmeI	TCCRAC	4 cut(s)	518, 935, 2032, 2074
Mox20I	TGGCCA	1 cut(s)	409
Mph1103I	ATGCAT	4 cut(s)	482, 529, 1094, 1666
MroI	TCCGGA	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	2082
MscI	TGGCCA	1 cut(s)	409
MslI	CAYNNNNRTG	2 cut(s)	485, 1834
Msp20I	TGGCCA	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	60
MspCI	CTTAAG	2 cut(s)	362, 703
MspI	CCGG	8 cut(s)	29, 345, 886, 946, 1413, 1736, 1866, 2054
MspR9I	CCNGG	8 cut(s)	345, 622, 860, 1414, 1736, 1737, 1866, 2014
MvaI	CCWGG	3 cut(s)	622, 860, 2014
MvnI	CGCG	1 cut(s)	1244
MwoI	GCNNNNNNNGC	3 cut(s)	105, 340, 2378
NciI	CCSGG	5 cut(s)	345, 1414, 1736, 1737, 1866
NcoI	CCATGG	1 cut(s)	1582
NdeI	CATATG	2 cut(s)	1758, 2044
NlaIV	GGNNCC	5 cut(s)	840, 909, 944, 1282, 1399
NmuCI	GTSAC	3 cut(s)	70, 145, 562
NsiI	ATGCAT	4 cut(s)	482, 529, 1094, 1666
NspI	RCATGY	3 cut(s)	1296, 1668, 2498
NspV	TTCGAA	1 cut(s)	854
PagI	TCATGA	1 cut(s)	378
PciSI	GCTCTTC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	1 cut(s)	1477
PdmI	GAANNNNTTC	1 cut(s)	2082
PfeI	GAWTC	3 cut(s)	669, 1138, 1703
PflMI	CCANNNNNTGG	2 cut(s)	1075, 1611
PfoI	TCCNGGA	1 cut(s)	1864
PkrI	GCNGC	5 cut(s)	62, 80, 760, 951, 2334
PleI	GAGTC	3 cut(s)	217, 363, 502
PpsI	GAGTC	3 cut(s)	217, 363, 502
PshBI	ATTAAT	1 cut(s)	2120
Psp6I	CCWGG	3 cut(s)	620, 858, 2012
PspGI	CCWGG	3 cut(s)	620, 858, 2012
PspN4I	GGNNCC	5 cut(s)	840, 909, 944, 1282, 1399
PspOMI	GGGCCC	1 cut(s)	838
PspPI	GGNCC	8 cut(s)	62, 333, 838, 839, 1021, 1132, 1410, 2039
PsuI	RGATCY	1 cut(s)	1713
RsaI	GTAC	5 cut(s)	812, 944, 1538, 1565, 1799
RsaNI	GTAC	5 cut(s)	811, 943, 1537, 1564, 1798
RseI	CAYNNNNRTG	2 cut(s)	485, 1834
SalI	GTCGAC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	768
SatI	GCNGC	5 cut(s)	61, 79, 759, 950, 2333
Sau96I	GGNCC	8 cut(s)	62, 333, 838, 839, 1021, 1132, 1410, 2039
SchI	GAGTC	3 cut(s)	218, 363, 503
ScrFI	CCNGG	8 cut(s)	345, 622, 860, 1414, 1736, 1737, 1866, 2014
SduI	GDGCHC	6 cut(s)	57, 361, 842, 924, 2053, 2548
SfaNI	GCATC	4 cut(s)	514, 1849, 2007, 2359
SfcI	CTRYAG	1 cut(s)	1959
SfuI	TTCGAA	1 cut(s)	854
SinI	GGWCC	2 cut(s)	1410, 2039
SmaI	CCCGGG	1 cut(s)	1737
SmiMI	CAYNNNNRTG	2 cut(s)	485, 1834
SmlI	CTYRAG	5 cut(s)	269, 362, 371, 703, 2580
SmoI	CTYRAG	5 cut(s)	269, 362, 371, 703, 2580
SsiI	CCGC	6 cut(s)	23, 60, 65, 937, 949, 982
SspMI	CTAG	7 cut(s)	68, 227, 737, 1439, 2171, 2373, 2466
StyD4I	CCNGG	8 cut(s)	343, 620, 858, 1412, 1734, 1735, 1864, 2012
StyI	CCWWGG	4 cut(s)	567, 1371, 1463, 1582
TaaI	ACNGT	2 cut(s)	1797, 1970
TaiI	ACGT	3 cut(s)	218, 1746, 1954
TaqI	TCGA	9 cut(s)	212, 417, 444, 522, 667, 728, 854, 2316, 2591
TaqII	GACCGA	3 cut(s)	454, 461, 2485
TatI	WGTACW	3 cut(s)	810, 1563, 1797
TauI	GCSGC	2 cut(s)	63, 952
TfiI	GAWTC	3 cut(s)	669, 1138, 1703
TscAI	CASTG	8 cut(s)	137, 156, 403, 1458, 1713, 1795, 1975, 2356
TseFI	GTSAC	3 cut(s)	70, 145, 562
TseI	GCWGC	3 cut(s)	78, 758, 2332
Tsp45I	GTSAC	3 cut(s)	70, 145, 562
TspMI	CCCGGG	1 cut(s)	1735
TspRI	CASTG	8 cut(s)	137, 156, 403, 1458, 1713, 1795, 1975, 2356
Van91I	CCANNNNNTGG	2 cut(s)	1075, 1611
Vha464I	CTTAAG	2 cut(s)	362, 703
VneI	GTGCAC	2 cut(s)	2049, 2544
VpaK11BI	GGWCC	2 cut(s)	1410, 2039
VspI	ATTAAT	1 cut(s)	2120
XapI	RAATTY	4 cut(s)	584, 597, 732, 1037
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	3 cut(s)	1296, 1668, 2498
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2417, 2422
XmaI	CCCGGG	1 cut(s)	1735
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	2082
XspI	CTAG	7 cut(s)	68, 227, 737, 1439, 2171, 2373, 2466
ZraI	GACGTC	1 cut(s)	216
Zsp2I	ATGCAT	4 cut(s)	482, 529, 1094, 1666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.