Rroxscaffold_5G00351700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005589
Physical Location & Seq
Reverse (-)
28227271 .. 28231219
3949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351700.1

Sequence Viewer

Length: 384 bp
ATGTATGCATATGAGCGTTTACTTCGTGCTTTCAGGTCTGGATATGAAATAGTGAAGATTTTAAAGGATGATCTACACTCATGGAGGAACATTTTATATGAAGAAATTGGAGGCTCATTCAGAAGTTTTAGTGAAGAATTAATTGAAGGAATAAAGGGGCAGAAAGTGGTGGGGAGATTAAAGCTCTACGTAGGTGAGAAAAGTGGAAGTGGTGCTGGCAATGGCAGTGGCGGTGGGGGTAAAAAAAAAAAAACAAGGGGCGAAATGAGAAGGACAATGGCAATGCTGCCGAGGGTGAACCGGTGGCGATGTCTTCGGATCGCCACCGATTCAGCACGGGCCTTTGCCTCGTGGGTCGCCCAATGTCCCGAGCCAAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.32

Weight (kDa)

9.95

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 326
AgeI ACCGGT 1 cut(s) 300
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
AlwI GGATC 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 286
AseI ATTAAT 1 cut(s) 140
AsiGI ACCGGT 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 206, 307
AvaI CYCGRG 1 cut(s) 368
BauI CACGAG 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 273
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 300
Bse3DI GCAATG 2 cut(s) 226, 288
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 2 cut(s) 226, 288
BseXI GCAGC 1 cut(s) 273
BshFI GGCC 1 cut(s) 341
BshTI ACCGGT 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 2 cut(s) 70, 318
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 341
BspPI GGATC 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 226, 288
BsrFI RCCGGY 1 cut(s) 300
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 2 cut(s) 70, 318
BssSI CACGAG 1 cut(s) 349
Bst2BI CACGAG 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 217
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 73, 321
BstMBI GATC 2 cut(s) 70, 318
BstSNI TACGTA 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 341
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 339
CspAI ACCGGT 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 1 cut(s) 81
CviJI RGCY 4 cut(s) 114, 184, 341, 373
CviKI_1 RGCY 4 cut(s) 114, 184, 341, 373
DpnI GATC 2 cut(s) 72, 320
DpnII GATC 2 cut(s) 70, 318
DraI TTTAAA 1 cut(s) 63
Eco105I TACGTA 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 368
EcoT22I ATGCAT 1 cut(s) 10
FaeI CATG 1 cut(s) 84
FaiI YATR 7 cut(s) 6, 10, 12, 45, 82, 97, 99
FaqI GGGAC 1 cut(s) 351
FatI CATG 1 cut(s) 80
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 1 cut(s) 341
HapII CCGG 1 cut(s) 301
Hin1II CATG 1 cut(s) 84
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 301
HphI GGTGA 2 cut(s) 206, 307
Hpy166II GTNNAC 2 cut(s) 20, 298
Hpy188I TCNGA 2 cut(s) 122, 318
Hpy188III TCNNGA 2 cut(s) 39, 368
Hpy8I GTNNAC 2 cut(s) 20, 298
HpyAV CCTTC 2 cut(s) 140, 264
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 84
Kzo9I GATC 2 cut(s) 70, 318
LpnPI CCDG 4 cut(s) 19, 24, 201, 314
Lsp1109I GCAGC 1 cut(s) 273
MaeII ACGT 1 cut(s) 189
MalI GATC 2 cut(s) 72, 320
MboI GATC 2 cut(s) 70, 318
MboII GAAGA 4 cut(s) 67, 113, 146, 305
MluCI AATT 3 cut(s) 105, 137, 141
MnlI CCTC 4 cut(s) 78, 104, 285, 358
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 3 cut(s) 62, 140, 179
MspI CCGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 10
NdeII GATC 2 cut(s) 70, 318
NlaIII CATG 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 329
PinAI ACCGGT 1 cut(s) 300
PkrI GCNGC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 140
PspPI GGNCC 1 cut(s) 339
SaqAI TTAA 3 cut(s) 62, 140, 179
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 70, 318
Sau96I GGNCC 1 cut(s) 339
SetI ASST 4 cut(s) 38, 186, 192, 196
SnaBI TACGTA 1 cut(s) 190
Sse9I AATT 3 cut(s) 105, 137, 141
SsiI CCGC 1 cut(s) 231
TaiI ACGT 1 cut(s) 192
TasI AATT 3 cut(s) 105, 137, 141
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 62, 140, 179
Tru9I TTAA 3 cut(s) 62, 140, 179
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 60, 114
TspRI CASTG 1 cut(s) 232
VspI ATTAAT 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.