Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005589

Physical Location & Seq

Genomic Coordinates Forward (+)

72874294 .. 72889686

Gene Structure 15393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCGTCGCAGATGATCAGACTATTCAGGCGCTTCCTCCAACCAAATGTCACAACATTGTTCTAACAAAGCAAACTTGGCAAGTACATGTTCATACTGCTGCGCTCCTTACTGAGACACATTATGTAAATCATGTAATCAATGATGTGACATTAGCCGGCAGTGCCGCATCATTTGTACAAGAGCTAGATAGGAGTGGAAGGCCTTTAAAAGATCGGTCCAAGTTTCTGACTAAAAGACCAAAATTGCAAATCGGACCTGAACGCATTCTCGGAAGCATTTCCAGCCAAATTACTATTCCAAAAGCTCTGAAATTTTACCAAGATGATCTACATTCATGGAGAAACATTTGTTATGAAGAGGTCAAGGGCAAAATCCGAATTTTTTATGGAGATTCAATTGAAGTAGCAGAAAATCCACCATCACCATCACCCAAAAACCTAATTCCATATTTTAGGGCCCAGAAACAGATTGCATTCTCAGATTTTCATATGACTAGTCTCTCTCAATTAGGAAAAGAAAAACCCATCAAGCTCACAATGATGGCAGGCAAGAAGAAGCAATTCTATGGTGGATGGCATGAAGACAAAAGCAAAGCGAGTACCAGAAGAAGTAGAGGTCGAGAAGAACAAGAAACAGAGCAAGCACAGAAAGAAAATGAAGCAGCACTCAATTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.79

Weight (kDa)

9.41

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09090 AT1G09090
fragaria_vesca	FvH4_6g06490
prunus_persica	Prupe.6G321500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0455621 RchiOBHm_Chr3g0455641
rosa_laevigata	RLG00000025344 RLG00000025346
rosa_multiflora	Rmu_sc0000223.1_g000005 Rmu_sc0002883.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052210 Rroxscaffold_5G00351700 Rroxscaffold_6G00423640 Rroxscaffold_6G00423670 Rroxscaffold_6G00424140 Rroxscaffold_6G00424160
rosa_rugosa	Rorug03G0008800 Rorug03G0008900
rosa_samantha	Rh3AG068200 Rh3AG068400 Rh3BG070800 Rh3BG070900 Rh3CG069100 Rh3CG069200 Rh3DG070700 Rh3DG070800
rosa_wichuraiana	Rw3G005470 Rw3G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	314, 381
AfaI	GTAC	3 cut(s)	87, 180, 604
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	399, 404
AhlI	ACTAGT	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	3 cut(s)	187, 308, 535
AluI	AGCT	3 cut(s)	187, 308, 535
Alw26I	GTCTC	2 cut(s)	110, 506
AoxI	GGCC	3 cut(s)	3, 203, 459
ApaI	GGGCCC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	101, 665
ApoI	RAATTY	2 cut(s)	314, 381
Asp700I	GAANNNNTTC	3 cut(s)	267, 280, 563
AspLEI	GCGC	2 cut(s)	34, 106
AspS9I	GGNCC	4 cut(s)	219, 257, 459, 460
AsuHPI	GGTGA	2 cut(s)	417, 423
AvaII	GGWCC	2 cut(s)	219, 257
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	88, 677
BccI	CCATC	5 cut(s)	430, 436, 536, 538, 570
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	110, 506
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	2 cut(s)	188, 498
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	3 cut(s)	102, 168, 666
BlsI	GCNGC	3 cut(s)	103, 169, 667
Bme18I	GGWCC	2 cut(s)	219, 257
BmgT120I	GGNCC	4 cut(s)	219, 257, 459, 460
BmiI	GGNNCC	1 cut(s)	461
BmsI	GCATC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	591
Bse118I	RCCGGY	1 cut(s)	158
BseGI	GGATG	1 cut(s)	581
BseMII	CTCAG	2 cut(s)	105, 495
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	2 cut(s)	88, 677
BshFI	GGCC	3 cut(s)	5, 205, 461
BsiSI	CCGG	1 cut(s)	159
BsmAI	GTCTC	2 cut(s)	110, 506
BsmI	GAATGC	2 cut(s)	267, 476
BsnI	GGCC	3 cut(s)	5, 205, 461
Bsp120I	GGGCCC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	16, 214, 328
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	3 cut(s)	5, 205, 461
BspCNI	CTCAG	2 cut(s)	106, 494
BspLI	GGNNCC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	158
BssMI	GATC	3 cut(s)	16, 214, 328
Bst6I	CTCTTC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	178
BstC8I	GCNNGC	3 cut(s)	160, 550, 645
BstDEI	CTNAG	2 cut(s)	114, 481
BstF5I	GGATG	1 cut(s)	581
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 106
BstKTI	GATC	3 cut(s)	19, 217, 331
BstMAI	GTCTC	2 cut(s)	110, 506
BstMBI	GATC	3 cut(s)	16, 214, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 164, 285
BstNSI	RCATGY	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	2 cut(s)	88, 677
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	5, 205, 461
BtsCI	GGATG	1 cut(s)	581
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	160, 550, 645
CfoI	GCGC	2 cut(s)	34, 106
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	219, 257, 459, 460
Csp6I	GTAC	3 cut(s)	86, 179, 603
CviAII	CATG	4 cut(s)	89, 134, 339, 581
CviJI	RGCY	8 cut(s)	5, 158, 187, 205, 288, 308, 461, 535
CviKI_1	RGCY	8 cut(s)	5, 158, 187, 205, 288, 308, 461, 535
CviQI	GTAC	3 cut(s)	86, 179, 603
DdeI	CTNAG	2 cut(s)	114, 481
DpnI	GATC	3 cut(s)	18, 216, 330
DpnII	GATC	3 cut(s)	16, 214, 328
DraI	TTTAAA	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	463
Eco47I	GGWCC	2 cut(s)	219, 257
EcoO109I	RGGNCCY	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	463
FaeI	CATG	4 cut(s)	92, 137, 342, 584
FatI	CATG	4 cut(s)	88, 133, 338, 580
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	102, 168, 666
FokI	GGATG	1 cut(s)	588
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	3 cut(s)	102, 168, 666
FspBI	CTAG	2 cut(s)	188, 498
GlaI	GCGC	2 cut(s)	33, 105
GluI	GCNGC	3 cut(s)	102, 168, 666
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	5, 205, 461
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	2 cut(s)	34, 106
Hin1II	CATG	4 cut(s)	92, 137, 342, 584
Hin6I	GCGC	2 cut(s)	32, 104
HinP1I	GCGC	2 cut(s)	32, 104
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	417, 423
Hpy188I	TCNGA	7 cut(s)	21, 231, 257, 275, 312, 380, 484
Hpy188III	TCNNGA	1 cut(s)	623
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	250, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 164, 285
HpyF3I	CTNAG	2 cut(s)	114, 481
Hsp92II	CATG	4 cut(s)	92, 137, 342, 584
HspAI	GCGC	2 cut(s)	32, 104
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 214, 328
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	14, 172, 273, 298, 476, 534, 619
Lsp1109I	GCAGC	2 cut(s)	88, 677
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	2 cut(s)	188, 498
MaeIII	GTNAC	2 cut(s)	50, 148
MalI	GATC	3 cut(s)	18, 216, 330
MboI	GATC	3 cut(s)	16, 214, 328
MboII	GAAGA	5 cut(s)	371, 568, 596, 621, 638
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	9 cut(s)	245, 291, 314, 381, 399, 444, 509, 563, 673
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	3 cut(s)	48, 355, 611
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	3 cut(s)	267, 280, 563
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	542
MspI	CCGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	267, 476
MwoI	GCNNNNNNNGC	3 cut(s)	79, 164, 285
NaeI	GCCGGC	1 cut(s)	160
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	16, 214, 328
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	4 cut(s)	92, 137, 342, 584
NlaIV	GGNNCC	1 cut(s)	461
NmuCI	GTSAC	2 cut(s)	50, 148
NspI	RCATGY	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	205
PciI	ACATGT	1 cut(s)	88
PctI	GAATGC	2 cut(s)	267, 476
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	3 cut(s)	267, 280, 563
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	103, 169, 667
PscI	ACATGT	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	461
PspOMI	GGGCCC	1 cut(s)	459
PspPI	GGNCC	4 cut(s)	219, 257, 459, 460
RsaI	GTAC	3 cut(s)	87, 180, 604
RsaNI	GTAC	3 cut(s)	86, 179, 603
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	3 cut(s)	102, 168, 666
Sau3AI	GATC	3 cut(s)	16, 214, 328
Sau96I	GGNCC	4 cut(s)	219, 257, 459, 460
SduI	GDGCHC	1 cut(s)	463
SetI	ASST	7 cut(s)	189, 262, 310, 366, 444, 537, 622
SfaNI	GCATC	1 cut(s)	179
SinI	GGWCC	2 cut(s)	219, 257
SmiMI	CAYNNNNRTG	1 cut(s)	542
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	9 cut(s)	245, 291, 314, 381, 399, 444, 509, 563, 673
SseBI	AGGCCT	1 cut(s)	205
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	188, 498
StuI	AGGCCT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	622
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	9 cut(s)	245, 291, 314, 381, 399, 444, 509, 563, 673
TatI	WGTACW	2 cut(s)	85, 178
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	50, 148
TseI	GCWGC	2 cut(s)	101, 665
Tsp45I	GTSAC	2 cut(s)	50, 148
TspDTI	ATGAA	6 cut(s)	83, 327, 372, 479, 597, 675
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	219, 257
XapI	RAATTY	2 cut(s)	314, 381
XceI	RCATGY	1 cut(s)	92
XmnI	GAANNNNTTC	3 cut(s)	267, 280, 563
XspI	CTAG	2 cut(s)	188, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.