Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005589

Physical Location & Seq

Genomic Coordinates Forward (+)

4788652 .. 4793689

Gene Structure 5038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG070700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGGTTAAATTTTGTAATGGGAAACAAAGTTACATCAATTATATATGTATTCATTTAACTGTGCAGATTATTACCTTAAGTGCCTCTGCTAATAAGCTGTCAAAAATTCTAGAACAAGCTGAGGAATATGCAGCATTGATTATGGAAGAGCTTGATCAAGACAACCTTGGATATATTGATTTGTACAACTTGGAAATGCTACTTCTTTCGGGCCCAACCCAATCTTCGAACCTGGAAACAGACAGCCACATTCAGAGCCGGTTGCTAAGTGAAAAGCTGGTTCCGACCAAAGAGCACAACCCTATAAGGCGGTGGTGCCGGCGGCTGTCCTACTTTGTTGAGGATAATTGGAGGCGGATTTGGGTCATTGTGCTATGGCTTTTGATATGCATGGGCCTCTTTGCTTGGAAATTCATTCAGTATAGACATAGGGAGGTATTCCATGTAATGGGCTATTGTGTATGCATTGCCAAAGGTGGAGCTGAGACCCTGAAGTTTAACATGGCCCTGATTCTTCTACCAGTATGTAGAAATACAATTACTTGGCTAAGAAGCAAGACCAAGTTAGGAGGGGTAGTTCCATTTGATGACAATATCAATTTTCATAAGGTGATCGCGTTTGGAATTGCAGTTGGGGTTGGTCTCCATGCCGGTTCCCATCTTACATGCGACTTCCCTAAACTACTACACTCTACCAATGATCAATATGACAAGATGAAGCCATTTTTCGGCCAAAAACGACCCAAGGACTACTGGTGGTTTGTGAAGGGAACCGAGGGCTGGACCGGGGTGGTTATGGTGGCACTAATGCTAGTTGCATACACACTGGCTCAACCTTGGTTTCGTCGCAATCGATTGAGAAACCTTCCTAAAACCCTAAAGAAACTTACTGGGTTCAATGCGTTTTGGTACTCCCATCACTTCTTTATCATTGTGTACATCCTCTTTATTATCCATGGATACTTTCTCTACCTCTCCAAGAACTGGGACAAGAAAACAACATGGATGTATCTGGCGTTCCCAATAATAATGTATGCATGTGAGCGTTTGCTTCGGGCTTTAAGGTCTGGATATGAATCAGTGAAGATCTTAAAGGTTGCTGTTTACCCAGGAAACGTATTGGCACTCCATATGTCTAAACCACACGGATTAAAATATACCAGTGGACAGTACATTTACATAAATTGTTCTGCTATTTCCCCATTTCAATGGCATCCATTCTCAATTACTTCAGCTCCCGGAGACGACTATCTAAGTGTTCATATTCGCACATTGGGTGATTGGACATCTCAGCTCAAATACATTTTCTCTCAGGTTTGCCAACGTCCTCCTATAGAACACAGTGGCCTTCTAAGAGCTGATATTGAACAATCCAATATCCAACCCAGGATGCCAAGACTTCTTATTGATGGTCCATATGGTGCACCGGCACAAGACTACAAAAACTACGAAGTTCTTCTACTTGTTGGACTTGGAATTGGAGCAACTCCATTAATAAGCATACTCAAAGATGTGCTTAACAACATTAAGCGACAAAAAGAACTAGAAGCTCAAATGTTGGTGGAAAATGGTGTTAAGAGAAAGTCTCCTTTTGCAACAAAACGAGCTTATTTCTACTGGATCACAAGAGAGCAAGGCTCGTTTGAGTGGTTTAGGGGTGTGATGAATGAGGTCGCAGAAAATGACCTCGACGGCGTGATTGAGCTGCACAACTACTGCACCAGTGTTTATGAAGAAGGAGATGCTAGATCAGCTTTGATTACTATGCTTCAGTCTATAAACCATGCCAAGAATGGTGTGGATGTAGTTTCAGGAACGAGGGTGAAGACGCATTTTGCTAGACCGAATTGGCGTAATGTTTTTAAGCATGTGGCAGTTAAGCACCCTGATCAAAAAGTTGGTGTGTTTTATTGTGGTGCGCATGGATTGGTTGGGGAGTTAAAGAGGTTAGCTCAAGACTTTTCGAGAAAAACTGAGACCAAGTTTGATTTCCATAAAGAGAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009845 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0032501 GO:0032502 GO:0043167 GO:0043169 GO:0043621 GO:0044464 GO:0046872 GO:0048856 GO:0050664 GO:0050896 GO:0055114 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

EF-hand_6 FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

669

Amino Acids

77.32

Weight (kDa)

9.32

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferric_reduct	PF01794	167 - 317	3.5e-11	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	360 - 477	1.8e-35	FAD-binding domain
NAD_binding_6	PF08030	483 - 651	2.6e-51	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09090 AT1G09090
fragaria_vesca	FvH4_6g06490
prunus_persica	Prupe.6G321500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0455621 RchiOBHm_Chr3g0455641
rosa_laevigata	RLG00000025344 RLG00000025346
rosa_multiflora	Rmu_sc0000223.1_g000005 Rmu_sc0002883.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052210 Rroxscaffold_5G00351700 Rroxscaffold_6G00423640 Rroxscaffold_6G00423670 Rroxscaffold_6G00424140 Rroxscaffold_6G00424160
rosa_rugosa	Rorug03G0008800 Rorug03G0008900
rosa_samantha	Rh3AG068200 Rh3AG068400 Rh3BG070800 Rh3BG070900 Rh3CG069100 Rh3CG069200 Rh3DG070700 Rh3DG070800
rosa_wichuraiana	Rw3G005470 Rw3G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1920
AccB1I	GGYRCC	1 cut(s)	315
AccB7I	CCANNNNNTGG	2 cut(s)	448, 984
AccII	CGCG	1 cut(s)	617
AciI	CCGC	3 cut(s)	310, 322, 355
AclWI	GGATC	1 cut(s)	1628
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	3 cut(s)	8, 105, 410
AcuI	CTGAAG	3 cut(s)	512, 1215, 1754
AfaI	GTAC	4 cut(s)	185, 911, 938, 1172
AfiI	CCNNNNNNNGG	4 cut(s)	448, 728, 780, 984
AflII	CTTAAG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	898, 1208, 1367
AjnI	CCWGG	3 cut(s)	231, 1108, 1385
AjuI	GAANNNNNNNTTGG	4 cut(s)	208, 240, 1973, 2005
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
Alw21I	GWGCWC	2 cut(s)	297, 1426
Alw26I	GTCTC	5 cut(s)	479, 647, 1236, 1590, 1970
Alw44I	GTGCAC	1 cut(s)	1422
AlwI	GGATC	1 cut(s)	1628
AoxI	GGCC	5 cut(s)	211, 394, 504, 730, 1345
ApaI	GGGCCC	1 cut(s)	215
ApaLI	GTGCAC	1 cut(s)	1422
ApeKI	GCWGC	2 cut(s)	131, 1705
ApoI	RAATTY	3 cut(s)	8, 105, 410
AseI	ATTAAT	1 cut(s)	1493
Asp700I	GAANNNNTTC	1 cut(s)	1455
AspLEI	GCGC	1 cut(s)	1921
AspS9I	GGNCC	6 cut(s)	211, 212, 394, 505, 783, 1412
AsuC2I	CCSGG	2 cut(s)	787, 1239
AsuHPI	GGTGA	3 cut(s)	622, 1289, 1834
AsuII	TTCGAA	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	783, 1412
BaeGI	GKGCMC	2 cut(s)	215, 1426
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	215
BarI	GAAGNNNNNNTAC	2 cut(s)	1443, 1475
BbsI	GAAGAC	1 cut(s)	1832
Bbv12I	GWGCWC	2 cut(s)	297, 1426
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	143, 1692
BccI	CCATC	3 cut(s)	666, 924, 1403
BceAI	ACGGC	1 cut(s)	1708
BciT130I	CCWGG	3 cut(s)	233, 1110, 1387
BciVI	GTATCC	1 cut(s)	953
BclI	TGATCA	3 cut(s)	154, 700, 1888
BcnI	CCSGG	2 cut(s)	787, 1239
BcoDI	GTCTC	5 cut(s)	479, 647, 1236, 1590, 1970
BfaI	CTAG	5 cut(s)	110, 812, 1544, 1746, 1839
BfmI	CTRYAG	1 cut(s)	1332
BfrI	CTTAAG	1 cut(s)	76
BfuI	GTATCC	1 cut(s)	953
BglII	AGATCT	1 cut(s)	1086
BisI	GCNGC	3 cut(s)	132, 323, 1706
BlsI	GCNGC	3 cut(s)	133, 324, 1707
Bme1390I	CCNGG	5 cut(s)	233, 787, 1110, 1239, 1387
Bme18I	GGWCC	2 cut(s)	783, 1412
BmgT120I	GGNCC	6 cut(s)	211, 212, 394, 505, 783, 1412
BmiI	GGNNCC	5 cut(s)	213, 282, 317, 655, 772
BmrFI	CCNGG	5 cut(s)	233, 787, 1110, 1239, 1387
BmrI	ACTGGG	2 cut(s)	900, 994
BmsI	GCATC	3 cut(s)	1222, 1380, 1732
BmuI	ACTGGG	2 cut(s)	900, 994
BpiI	GAAGAC	1 cut(s)	1832
BplI	GAGNNNNNCTC	6 cut(s)	1570, 1602, 1622, 1654, 1936, 1968
Bpu10I	CCTNAGC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	1938
BpuMI	CCSGG	2 cut(s)	787, 1239
Bsa29I	ATCGAT	1 cut(s)	853
BsaBI	GATNNNNATC	1 cut(s)	1075
BsaI	GGTCTC	3 cut(s)	479, 647, 1970
BsaJI	CCNNGG	8 cut(s)	166, 744, 774, 786, 836, 955, 1108, 1385
BsaXI	ACNNNNNCTCC	4 cut(s)	561, 591, 1219, 1249
Bsc4I	CCNNNNNNNGG	4 cut(s)	448, 728, 780, 984
Bse118I	RCCGGY	4 cut(s)	258, 318, 650, 1426
Bse1I	ACTGG	8 cut(s)	521, 758, 831, 895, 989, 1161, 1622, 1722
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	1075
BseBI	CCWGG	3 cut(s)	233, 1110, 1387
BseCI	ATCGAT	1 cut(s)	853
BseDI	CCNNGG	8 cut(s)	166, 744, 774, 786, 836, 955, 1108, 1385
BseGI	GGATG	5 cut(s)	939, 1011, 1213, 1395, 1807
BseJI	GATNNNNATC	1 cut(s)	1075
BseLI	CCNNNNNNNGG	4 cut(s)	448, 728, 780, 984
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	5 cut(s)	111, 474, 1304, 1325, 1965
BseNI	ACTGG	8 cut(s)	521, 758, 831, 895, 989, 1161, 1622, 1722
BseSI	GKGCMC	2 cut(s)	215, 1426
BseXI	GCAGC	2 cut(s)	143, 1692
BsgI	GTGCAG	3 cut(s)	83, 1691, 1702
Bsh1236I	CGCG	1 cut(s)	617
BshFI	GGCC	5 cut(s)	213, 396, 506, 732, 1347
BshNI	GGYRCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	853
BsiHKAI	GWGCWC	2 cut(s)	297, 1426
BsiSI	CCGG	6 cut(s)	259, 319, 651, 786, 1239, 1427
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	4 cut(s)	448, 728, 780, 984
BsmAI	GTCTC	5 cut(s)	479, 647, 1236, 1590, 1970
BsmBI	CGTCTC	1 cut(s)	1236
BsmFI	GGGAC	1 cut(s)	1001
BsnI	GGCC	5 cut(s)	213, 396, 506, 732, 1347
Bso31I	GGTCTC	3 cut(s)	479, 647, 1970
Bsp119I	TTCGAA	1 cut(s)	227
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	3 cut(s)	215, 297, 1426
Bsp1407I	TGTACA	2 cut(s)	183, 936
Bsp143I	GATC	7 cut(s)	154, 612, 700, 1086, 1620, 1748, 1888
Bsp19I	CCATGG	1 cut(s)	955
BspACI	CCGC	3 cut(s)	310, 322, 355
BspANI	GGCC	5 cut(s)	213, 396, 506, 732, 1347
BspCNI	CTCAG	5 cut(s)	112, 475, 1303, 1324, 1966
BspDI	ATCGAT	1 cut(s)	853
BspFNI	CGCG	1 cut(s)	617
BspLI	GGNNCC	5 cut(s)	213, 282, 317, 655, 772
BspPI	GGATC	1 cut(s)	1628
BspQI	GCTCTTC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	315
BspTI	CTTAAG	1 cut(s)	76
BspTNI	GGTCTC	3 cut(s)	479, 647, 1970
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	4 cut(s)	258, 318, 650, 1426
BsrGI	TGTACA	2 cut(s)	183, 936
BsrI	ACTGG	8 cut(s)	521, 758, 831, 895, 989, 1161, 1622, 1722
BssAI	RCCGGY	4 cut(s)	258, 318, 650, 1426
BssECI	CCNNGG	8 cut(s)	166, 744, 774, 786, 836, 955, 1108, 1385
BssMI	GATC	7 cut(s)	154, 612, 700, 1086, 1620, 1748, 1888
BssT1I	CCWWGG	4 cut(s)	166, 744, 836, 955
Bst2UI	CCWGG	3 cut(s)	233, 1110, 1387
Bst4CI	ACNGT	3 cut(s)	61, 1170, 1343
Bst6I	CTCTTC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	76
BstAUI	TGTACA	2 cut(s)	183, 936
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	9 cut(s)	120, 266, 483, 548, 1253, 1290, 1311, 1352, 1974
BstDSI	CCRYGG	1 cut(s)	955
BstF5I	GGATG	5 cut(s)	939, 1011, 1213, 1395, 1807
BstFNI	CGCG	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	1921
BstKTI	GATC	7 cut(s)	157, 615, 703, 1089, 1623, 1751, 1891
BstMAI	GTCTC	5 cut(s)	479, 647, 1236, 1590, 1970
BstMBI	GATC	7 cut(s)	154, 612, 700, 1086, 1620, 1748, 1888
BstMWI	GCNNNNNNNGC	1 cut(s)	1751
BstNI	CCWGG	3 cut(s)	233, 1110, 1387
BstNSI	RCATGY	3 cut(s)	669, 1041, 1871
BstSCI	CCNGG	5 cut(s)	231, 785, 1108, 1237, 1385
BstSFI	CTRYAG	1 cut(s)	1332
BstSLI	GKGCMC	2 cut(s)	215, 1426
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	143, 1692
BstV2I	GAAGAC	1 cut(s)	1832
BstX2I	RGATCY	1 cut(s)	1086
BstXI	CCANNNNNNTGG	1 cut(s)	1209
BstYI	RGATCY	1 cut(s)	1086
Bsu15I	ATCGAT	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	5 cut(s)	213, 396, 506, 732, 1347
BsuTUI	ATCGAT	1 cut(s)	853
BtgI	CCRYGG	1 cut(s)	955
BtsCI	GGATG	5 cut(s)	939, 1011, 1213, 1395, 1807
BtsIMutI	CAGTG	5 cut(s)	824, 1086, 1168, 1348, 1729
Cac8I	GCNNGC	1 cut(s)	320
CfoI	GCGC	1 cut(s)	1921
Cfr10I	RCCGGY	4 cut(s)	258, 318, 650, 1426
Cfr13I	GGNCC	6 cut(s)	211, 212, 394, 505, 783, 1412
ClaI	ATCGAT	1 cut(s)	853
CseI	GACGC	1 cut(s)	1837
Csp6I	GTAC	4 cut(s)	184, 910, 937, 1171
CviQI	GTAC	4 cut(s)	184, 910, 937, 1171
DdeI	CTNAG	9 cut(s)	120, 266, 483, 548, 1253, 1290, 1311, 1352, 1974
DpnI	GATC	7 cut(s)	156, 614, 702, 1088, 1622, 1750, 1890
DpnII	GATC	7 cut(s)	154, 612, 700, 1086, 1620, 1748, 1888
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	370
Eco130I	CCWWGG	4 cut(s)	166, 744, 836, 955
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	3 cut(s)	479, 647, 1970
Eco47I	GGWCC	2 cut(s)	783, 1412
Eco57I	CTGAAG	3 cut(s)	512, 1215, 1754
EcoRII	CCWGG	3 cut(s)	231, 1108, 1385
EcoT14I	CCWWGG	4 cut(s)	166, 744, 836, 955
EcoT22I	ATGCAT	3 cut(s)	392, 467, 1039
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	4 cut(s)	166, 744, 836, 955
Esp3I	CGTCTC	1 cut(s)	1236
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 1500, 1532
FaqI	GGGAC	1 cut(s)	1001
FauNDI	CATATG	2 cut(s)	1131, 1417
FbaI	TGATCA	3 cut(s)	154, 700, 1888
Fnu4HI	GCNGC	3 cut(s)	132, 323, 1706
FokI	GGATG	5 cut(s)	926, 1018, 1200, 1402, 1814
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	132, 323, 1706
FspAI	RTGCGCAY	1 cut(s)	1920
FspBI	CTAG	5 cut(s)	110, 812, 1544, 1746, 1839
FspI	TGCGCA	1 cut(s)	1920
GlaI	GCGC	1 cut(s)	1920
GluI	GCNGC	3 cut(s)	132, 323, 1706
HaeIII	GGCC	5 cut(s)	213, 396, 506, 732, 1347
HapII	CCGG	6 cut(s)	259, 319, 651, 786, 1239, 1427
HgaI	GACGC	1 cut(s)	1837
HhaI	GCGC	1 cut(s)	1921
Hin6I	GCGC	1 cut(s)	1919
HinP1I	GCGC	1 cut(s)	1919
HinfI	GANTC	2 cut(s)	511, 1076
HpaII	CCGG	6 cut(s)	259, 319, 651, 786, 1239, 1427
HphI	GGTGA	3 cut(s)	622, 1289, 1834
Hpy166II	GTNNAC	4 cut(s)	937, 1105, 1166, 1424
Hpy188I	TCNGA	2 cut(s)	255, 285
Hpy188III	TCNNGA	6 cut(s)	110, 158, 1068, 1812, 1955, 1965
Hpy8I	GTNNAC	4 cut(s)	937, 1105, 1166, 1424
Hpy99I	CGWCG	2 cut(s)	849, 1694
HpyAV	CCTTC	4 cut(s)	760, 875, 1358, 1730
HpyCH4III	ACNGT	3 cut(s)	61, 1170, 1343
HpyCH4IV	ACGT	2 cut(s)	1116, 1324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1751
HpyF3I	CTNAG	9 cut(s)	120, 266, 483, 548, 1253, 1290, 1311, 1352, 1974
HpySE526I	ACGT	2 cut(s)	1116, 1324
HspAI	GCGC	1 cut(s)	1919
KroI	GCCGGC	1 cut(s)	318
KroNI	GCCGGC	1 cut(s)	320
Ksp22I	TGATCA	3 cut(s)	154, 700, 1888
Kzo9I	GATC	7 cut(s)	154, 612, 700, 1086, 1620, 1748, 1888
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	3 cut(s)	479, 1240, 1481
Lsp1109I	GCAGC	2 cut(s)	143, 1692
LweI	GCATC	3 cut(s)	1222, 1380, 1732
MaeI	CTAG	5 cut(s)	110, 812, 1544, 1746, 1839
MaeII	ACGT	2 cut(s)	1116, 1324
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	7 cut(s)	156, 614, 702, 1088, 1622, 1750, 1890
MboI	GATC	7 cut(s)	154, 612, 700, 1086, 1620, 1748, 1888
MboII	GAAGA	7 cut(s)	158, 216, 506, 1096, 1448, 1745, 1837
MflI	RGATCY	1 cut(s)	1086
MhlI	GDGCHC	3 cut(s)	215, 297, 1426
MmeI	TCCRAC	3 cut(s)	308, 1405, 1447
Mph1103I	ATGCAT	3 cut(s)	392, 467, 1039
MroNI	GCCGGC	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	1455
MslI	CAYNNNNRTG	1 cut(s)	1207
MspCI	CTTAAG	1 cut(s)	76
MspI	CCGG	6 cut(s)	259, 319, 651, 786, 1239, 1427
MspR9I	CCNGG	5 cut(s)	233, 787, 1110, 1239, 1387
MvaI	CCWGG	3 cut(s)	233, 1110, 1387
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	1 cut(s)	1751
NaeI	GCCGGC	1 cut(s)	320
NciI	CCSGG	2 cut(s)	787, 1239
NcoI	CCATGG	1 cut(s)	955
NdeI	CATATG	2 cut(s)	1131, 1417
NdeII	GATC	7 cut(s)	154, 612, 700, 1086, 1620, 1748, 1888
NgoMIV	GCCGGC	1 cut(s)	318
NlaIV	GGNNCC	5 cut(s)	213, 282, 317, 655, 772
NsbI	TGCGCA	1 cut(s)	1920
NsiI	ATGCAT	3 cut(s)	392, 467, 1039
NspI	RCATGY	3 cut(s)	669, 1041, 1871
NspV	TTCGAA	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	850
PdiI	GCCGGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	1455
PfeI	GAWTC	2 cut(s)	511, 1076
PflMI	CCANNNNNTGG	2 cut(s)	448, 984
PfoI	TCCNGGA	1 cut(s)	1237
PkrI	GCNGC	3 cut(s)	133, 324, 1707
PshBI	ATTAAT	1 cut(s)	1493
Psp6I	CCWGG	3 cut(s)	231, 1108, 1385
PspGI	CCWGG	3 cut(s)	231, 1108, 1385
PspN4I	GGNNCC	5 cut(s)	213, 282, 317, 655, 772
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	6 cut(s)	211, 212, 394, 505, 783, 1412
PsrI	GAACNNNNNNTAC	2 cut(s)	1001, 1033
PsuI	RGATCY	1 cut(s)	1086
RsaI	GTAC	4 cut(s)	185, 911, 938, 1172
RsaNI	GTAC	4 cut(s)	184, 910, 937, 1171
RseI	CAYNNNNRTG	1 cut(s)	1207
SapI	GCTCTTC	1 cut(s)	141
SatI	GCNGC	3 cut(s)	132, 323, 1706
Sau3AI	GATC	7 cut(s)	154, 612, 700, 1086, 1620, 1748, 1888
Sau96I	GGNCC	6 cut(s)	211, 212, 394, 505, 783, 1412
ScrFI	CCNGG	5 cut(s)	233, 787, 1110, 1239, 1387
SduI	GDGCHC	3 cut(s)	215, 297, 1426
SfaNI	GCATC	3 cut(s)	1222, 1380, 1732
SfcI	CTRYAG	1 cut(s)	1332
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	2 cut(s)	783, 1412
SmiMI	CAYNNNNRTG	1 cut(s)	1207
SmlI	CTYRAG	2 cut(s)	76, 1953
SmoI	CTYRAG	2 cut(s)	76, 1953
SsiI	CCGC	3 cut(s)	310, 322, 355
SspMI	CTAG	5 cut(s)	110, 812, 1544, 1746, 1839
StyD4I	CCNGG	5 cut(s)	231, 785, 1108, 1237, 1385
StyI	CCWWGG	4 cut(s)	166, 744, 836, 955
TaaI	ACNGT	3 cut(s)	61, 1170, 1343
TaiI	ACGT	2 cut(s)	1119, 1327
TaqI	TCGA	4 cut(s)	227, 853, 1689, 1964
TaqII	GACCGA	1 cut(s)	1858
TatI	WGTACW	3 cut(s)	183, 936, 1170
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	511, 1076
TscAI	CASTG	5 cut(s)	831, 1086, 1168, 1348, 1729
TseI	GCWGC	2 cut(s)	131, 1705
TspDTI	ATGAA	8 cut(s)	41, 403, 593, 731, 1089, 1250, 1679, 1746
TspGWI	ACGGA	1 cut(s)	1161
TspRI	CASTG	5 cut(s)	831, 1086, 1168, 1348, 1729
Van91I	CCANNNNNTGG	2 cut(s)	448, 984
Vha464I	CTTAAG	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	1422
VpaK11BI	GGWCC	2 cut(s)	783, 1412
VspI	ATTAAT	1 cut(s)	1493
XapI	RAATTY	3 cut(s)	8, 105, 410
XbaI	TCTAGA	1 cut(s)	109
XceI	RCATGY	3 cut(s)	669, 1041, 1871
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1790, 1795
XmnI	GAANNNNTTC	1 cut(s)	1455
XspI	CTAG	5 cut(s)	110, 812, 1544, 1746, 1839
Zsp2I	ATGCAT	3 cut(s)	392, 467, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.