Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002883.1

Orthogroup ID

OG0005589

Physical Location & Seq

Genomic Coordinates Forward (+)

11103 .. 16259

Gene Structure 5157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002883.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

atggagattcaagcagaaaacccgctgcctgataaagagagcaaacgggccgggcagggcggcccgctagggaccagcagcaagatgaggagcaacagcaacagaagcacaatgttcaaagatgacgatcaatgctatatggaagtggcactcgatgtttgcgacaacaatacctttgggcttcggaacatcagacgagctgaacctgagtcgacgtcagcaaggctagagagaagacttgcttctcaactctctcttaaactcaagaaagtctcacgtgaactgaaacgcatgaaatcttccttgagcttcaagaaggtcgacagcccccccaagcccgggatgaaagagtcgagtgagtttgcttgcgaagtattcggtgcattggctcgtcggagaggaataacatcgtgttgtgtgaccaaggaagagttgagagaattttgggaacaaatttcagatcacagcttcaatgccaggcttcaaaccttctttgacatggtggataaaaatgcagatggtcgaatctctgaagaagaggtgaaagagattattaccttaagtgcctctgctaataagctgtcaaaaattctagaacatgctgaggaatatgcagcattgattatggaagagcttgatcatgacaaccttggatatattgatttgtacaacttgaaaatgctacttcttccgggcccaacccaatcttcgaacctggaaacagacatcgacattcagagccggttgctaagtgaaaagctggttccgaccaaagagcacaaccctataagacggtggtgccggcggctgtcctactttgttgaggataattggaggcggatatgggtcgttctgctatggctttttatatgcatgggcctctttgcttggaaattcattcagtatagacatagggaggtgatcgcgtttggaattgcagttggggttagtctccatgccggttcccatcttacatgcgacttccccagactactacactcaaccaatgatcaatacgacaagatgaagccatttttcggccaaaaacgacccgacaactactggtggtttctgaagggaaccgagggctggaccggggtggttatggtggcactaatgctggttgcatacacattggctcaaccttggttccgttgcaatcgactaagaaacctccctaaaaccttaaagaaaattacagggttcaatgcattttggtactcccatcacctctttatcattgtgtacatcctccttattatccatggatacttcctgtacctctccaaggactgggacaagaaaacaacatggatgtatctggctttcccagtaataatatatgcatgtgagcgtttgcttcgtgctttcaggtctggatatgaatcagtgaagatcttaaaggttattgtttacccgggaaacgtattggcactccatatgtctaaaccacagggattaaaatataccagtggacaatacatttacataaattgtcctgctatttcctcatttcaatggcatccattctcaattacttcagctcctggagacgactatctaagtgttcatattcgcacgttgggtgattggacatctcagctcaaatacattttctctcaggtttgccaacgtcctcctatagaacacagtggccttctaagagctgatattgaacaatccaatatccaacccaggatgccaagacttcttattgatggtccatatggtgcaccagctcaaggctacaaaaactacgaagttcttctacttgttggacttggaattggagcaactccattaataagcatactcaaagatgtgcttaacaacattaagcgacagaaagaactagaagctcaaatgttggtggaaagtggtgtgaagagaaagtctacttttgcaacaaaacgagcttatttctactggatcacaagagagcaaggctcgttcgagtggtttaggggtgtgatgaatgaggtcgcagaaaatgacctcgacggcgtgattgagctgcacaactactgcaccagtgtctatgaagaaggagatgctagatctgctctgattactatgcttcagtctataaaccatgccaaaaatggtgtggatgttgtatcaggaacgagggtgaagacgcattttgcaagaccaaaatggcgtaatgtttttaagcatgtggcggtaaagcatcctgatcaaaaagttggtaagtactactactgcataccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009845 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0032501 GO:0032502 GO:0043167 GO:0043169 GO:0043621 GO:0044464 GO:0046872 GO:0048856 GO:0050664 GO:0050896 GO:0055114 GO:0071944 GO:0090351

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

EF-hand_6 FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

744

Amino Acids

85.88

Weight (kDa)

9.17

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09090 AT1G09090
fragaria_vesca	FvH4_6g06490
prunus_persica	Prupe.6G321500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0455621 RchiOBHm_Chr3g0455641
rosa_laevigata	RLG00000025344 RLG00000025346
rosa_multiflora	Rmu_sc0000223.1_g000005 Rmu_sc0002883.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052210 Rroxscaffold_5G00351700 Rroxscaffold_6G00423640 Rroxscaffold_6G00423670 Rroxscaffold_6G00424140 Rroxscaffold_6G00424160
rosa_rugosa	Rorug03G0008800 Rorug03G0008900
rosa_samantha	Rh3AG068200 Rh3AG068400 Rh3BG070800 Rh3BG070900 Rh3CG069100 Rh3CG069200 Rh3DG070700 Rh3DG070800
rosa_wichuraiana	Rw3G005470 Rw3G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	798
AccB7I	CCANNNNNTGG	1 cut(s)	1293
AccI	GTMKAC	3 cut(s)	212, 321, 1895
AccII	CGCG	1 cut(s)	926
AciI	CCGC	6 cut(s)	23, 60, 65, 805, 838, 2183
AclWI	GGATC	1 cut(s)	1937
AcoI	YGGCCR	1 cut(s)	1039
AcsI	RAATTY	4 cut(s)	440, 453, 588, 893
AcuI	CTGAAG	4 cut(s)	552, 1094, 1524, 2063
AcvI	CACGTG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	5 cut(s)	668, 1220, 1247, 1280, 2216
AfiI	CCNNNNNNNGG	7 cut(s)	338, 339, 1037, 1089, 1288, 1293, 1742
AflII	CTTAAG	1 cut(s)	559
AgsI	TTSAA	9 cut(s)	11, 118, 313, 472, 485, 676, 1207, 1517, 1676
AjnI	CCWGG	4 cut(s)	476, 714, 1546, 1694
AjuI	GAANNNNNNNTTGG	2 cut(s)	691, 723
Alw21I	GWGCWC	2 cut(s)	780, 1735
Alw26I	GTCTC	3 cut(s)	277, 956, 1545
Alw44I	GTGCAC	1 cut(s)	1731
AlwI	GGATC	1 cut(s)	1937
AlwNI	CAGNNNCTG	1 cut(s)	1547
Ama87I	CYCGRG	2 cut(s)	338, 1417
AoxI	GGCC	6 cut(s)	48, 61, 694, 877, 1039, 1654
ApaI	GGGCCC	1 cut(s)	698
ApaLI	GTGCAC	1 cut(s)	1731
ApeKI	GCWGC	4 cut(s)	25, 78, 614, 2014
ApoI	RAATTY	4 cut(s)	440, 453, 588, 893
AseI	ATTAAT	1 cut(s)	1802
Asp700I	GAANNNNTTC	1 cut(s)	1764
AspS9I	GGNCC	8 cut(s)	48, 62, 72, 694, 695, 877, 1092, 1721
AsuC2I	CCSGG	7 cut(s)	52, 339, 340, 693, 1096, 1418, 1419
AsuHPI	GGTGA	5 cut(s)	553, 931, 1220, 1598, 2143
AsuII	TTCGAA	1 cut(s)	710
AvaI	CYCGRG	2 cut(s)	338, 1417
AvaII	GGWCC	3 cut(s)	72, 1092, 1721
BaeGI	GKGCMC	2 cut(s)	698, 1735
BanI	GGYRCC	1 cut(s)	798
BanII	GRGCYC	1 cut(s)	698
BarI	GAAGNNNNNNTAC	2 cut(s)	1752, 1784
BbrPI	CACGTG	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	241, 2141
Bbv12I	GWGCWC	2 cut(s)	780, 1735
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	4 cut(s)	12, 90, 626, 2001
BccI	CCATC	4 cut(s)	512, 975, 1233, 1712
BceAI	ACGGC	1 cut(s)	2017
BciT130I	CCWGG	4 cut(s)	478, 716, 1548, 1696
BciVI	GTATCC	1 cut(s)	1262
BclI	TGATCA	3 cut(s)	637, 1009, 2197
BcnI	CCSGG	7 cut(s)	52, 339, 340, 693, 1096, 1418, 1419
BcoDI	GTCTC	3 cut(s)	277, 956, 1545
BfaI	CTAG	5 cut(s)	68, 227, 593, 1853, 2055
BfmI	CTRYAG	1 cut(s)	1641
BfrI	CTTAAG	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	1262
BglII	AGATCT	2 cut(s)	1395, 2057
BisI	GCNGC	6 cut(s)	26, 61, 79, 615, 806, 2015
BlsI	GCNGC	6 cut(s)	27, 62, 80, 616, 807, 2016
BmcAI	AGTACT	1 cut(s)	2216
Bme18I	GGWCC	3 cut(s)	72, 1092, 1721
BmeT110I	CYCGRG	2 cut(s)	338, 1417
BmgT120I	GGNCC	8 cut(s)	48, 62, 72, 694, 695, 877, 1092, 1721
BmiI	GGNNCC	7 cut(s)	73, 696, 765, 800, 964, 1081, 1151
BmrI	ACTGGG	2 cut(s)	1303, 1325
BmsI	GCATC	4 cut(s)	1531, 1689, 2041, 2200
BmuI	ACTGGG	2 cut(s)	1303, 1325
BpiI	GAAGAC	2 cut(s)	241, 2141
BplI	GAGNNNNNCTC	2 cut(s)	1931, 1963
BpmI	CTGGAG	1 cut(s)	1569
Bpu10I	CCTNAGC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	710
BpuEI	CTTGAG	3 cut(s)	248, 325, 1725
BpuMI	CCSGG	7 cut(s)	52, 339, 340, 693, 1096, 1418, 1419
BsaAI	YACGTR	1 cut(s)	278
BsaBI	GATNNNNATC	2 cut(s)	126, 1384
BsaHI	GRCGYC	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	1528, 1558
Bsc4I	CCNNNNNNNGG	7 cut(s)	338, 339, 1037, 1089, 1288, 1293, 1742
Bse118I	RCCGGY	3 cut(s)	741, 801, 959
Bse1I	ACTGG	6 cut(s)	1067, 1298, 1331, 1470, 1931, 2031
Bse8I	GATNNNNATC	2 cut(s)	126, 1384
BseBI	CCWGG	4 cut(s)	478, 716, 1548, 1696
BseGI	GGATG	7 cut(s)	348, 1248, 1320, 1522, 1704, 2116, 2191
BseJI	GATNNNNATC	2 cut(s)	126, 1384
BseLI	CCNNNNNNNGG	7 cut(s)	338, 339, 1037, 1089, 1288, 1293, 1742
BseMII	CTCAG	4 cut(s)	198, 594, 1613, 1634
BseNI	ACTGG	6 cut(s)	1067, 1298, 1331, 1470, 1931, 2031
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	2 cut(s)	698, 1735
BseXI	GCAGC	4 cut(s)	12, 90, 626, 2001
BsgI	GTGCAG	2 cut(s)	2000, 2011
Bsh1236I	CGCG	1 cut(s)	926
BshFI	GGCC	6 cut(s)	50, 63, 696, 879, 1041, 1656
BshNI	GGYRCC	1 cut(s)	798
BsiHKAI	GWGCWC	2 cut(s)	780, 1735
BsiHKCI	CYCGRG	2 cut(s)	338, 1417
BsiSI	CCGG	8 cut(s)	51, 339, 692, 742, 802, 960, 1095, 1418
BslFI	GGGAC	2 cut(s)	85, 1310
BslI	CCNNNNNNNGG	7 cut(s)	338, 339, 1037, 1089, 1288, 1293, 1742
BsmAI	GTCTC	3 cut(s)	277, 956, 1545
BsmBI	CGTCTC	1 cut(s)	1545
BsmFI	GGGAC	2 cut(s)	85, 1310
BsnI	GGCC	6 cut(s)	50, 63, 696, 879, 1041, 1656
BsoBI	CYCGRG	2 cut(s)	338, 1417
Bsp119I	TTCGAA	1 cut(s)	710
Bsp120I	GGGCCC	1 cut(s)	694
Bsp1286I	GDGCHC	3 cut(s)	698, 780, 1735
Bsp1407I	TGTACA	2 cut(s)	666, 1245
Bsp143I	GATC	9 cut(s)	127, 460, 637, 921, 1009, 1395, 1929, 2057, 2197
Bsp19I	CCATGG	1 cut(s)	1264
BspACI	CCGC	6 cut(s)	23, 60, 65, 805, 838, 2183
BspANI	GGCC	6 cut(s)	50, 63, 696, 879, 1041, 1656
BspCNI	CTCAG	4 cut(s)	199, 595, 1612, 1633
BspFNI	CGCG	1 cut(s)	926
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	7 cut(s)	73, 696, 765, 800, 964, 1081, 1151
BspPI	GGATC	1 cut(s)	1937
BspQI	GCTCTTC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	798
BspTI	CTTAAG	1 cut(s)	559
BsrFI	RCCGGY	3 cut(s)	741, 801, 959
BsrGI	TGTACA	2 cut(s)	666, 1245
BsrI	ACTGG	6 cut(s)	1067, 1298, 1331, 1470, 1931, 2031
BssAI	RCCGGY	3 cut(s)	741, 801, 959
BssMI	GATC	9 cut(s)	127, 460, 637, 921, 1009, 1395, 1929, 2057, 2197
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	5 cut(s)	423, 649, 1145, 1264, 1287
Bst2UI	CCWGG	4 cut(s)	478, 716, 1548, 1696
Bst4CI	ACNGT	2 cut(s)	795, 1652
Bst6I	CTCTTC	4 cut(s)	423, 531, 624, 1880
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	559
BstAUI	TGTACA	2 cut(s)	666, 1245
BstBAI	YACGTR	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	65, 367, 803
BstDEI	CTNAG	8 cut(s)	207, 603, 749, 1166, 1562, 1599, 1620, 1661
BstDSI	CCRYGG	1 cut(s)	1264
BstENI	CCTNNNNNAGG	1 cut(s)	1286
BstF5I	GGATG	7 cut(s)	348, 1248, 1320, 1522, 1704, 2116, 2191
BstFNI	CGCG	1 cut(s)	926
BstKTI	GATC	9 cut(s)	130, 463, 640, 924, 1012, 1398, 1932, 2060, 2200
BstMAI	GTCTC	3 cut(s)	277, 956, 1545
BstMBI	GATC	9 cut(s)	127, 460, 637, 921, 1009, 1395, 1929, 2057, 2197
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 2060
BstNI	CCWGG	4 cut(s)	478, 716, 1548, 1696
BstNSI	RCATGY	4 cut(s)	602, 978, 1350, 2180
BstSFI	CTRYAG	1 cut(s)	1641
BstSLI	GKGCMC	2 cut(s)	698, 1735
BstUI	CGCG	1 cut(s)	926
BstV1I	GCAGC	4 cut(s)	12, 90, 626, 2001
BstV2I	GAAGAC	2 cut(s)	241, 2141
BstX2I	RGATCY	2 cut(s)	1395, 2057
BstYI	RGATCY	2 cut(s)	1395, 2057
BsuI	GTATCC	1 cut(s)	1262
BsuRI	GGCC	6 cut(s)	50, 63, 696, 879, 1041, 1656
BtgI	CCRYGG	1 cut(s)	1264
BtsCI	GGATG	7 cut(s)	348, 1248, 1320, 1522, 1704, 2116, 2191
BtsIMutI	CAGTG	4 cut(s)	1395, 1477, 1657, 2038
Cac8I	GCNNGC	3 cut(s)	65, 367, 803
CaiI	CAGNNNCTG	1 cut(s)	1547
CciI	TCATGA	1 cut(s)	640
Cfr10I	RCCGGY	3 cut(s)	741, 801, 959
Cfr13I	GGNCC	8 cut(s)	48, 62, 72, 694, 695, 877, 1092, 1721
Cfr9I	CCCGGG	2 cut(s)	338, 1417
CseI	GACGC	1 cut(s)	2146
Csp6I	GTAC	5 cut(s)	667, 1219, 1246, 1279, 2215
CviQI	GTAC	5 cut(s)	667, 1219, 1246, 1279, 2215
DdeI	CTNAG	8 cut(s)	207, 603, 749, 1166, 1562, 1599, 1620, 1661
DpnI	GATC	9 cut(s)	129, 462, 639, 923, 1011, 1397, 1931, 2059, 2199
DpnII	GATC	9 cut(s)	127, 460, 637, 921, 1009, 1395, 1929, 2057, 2197
EaeI	YGGCCR	1 cut(s)	1039
Eam1104I	CTCTTC	4 cut(s)	423, 531, 624, 1880
EarI	CTCTTC	4 cut(s)	423, 531, 624, 1880
EciI	GGCGGA	1 cut(s)	853
Eco130I	CCWWGG	5 cut(s)	423, 649, 1145, 1264, 1287
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	3 cut(s)	72, 1092, 1721
Eco57I	CTGAAG	4 cut(s)	552, 1094, 1524, 2063
Eco72I	CACGTG	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	338, 1417
EcoNI	CCTNNNNNAGG	1 cut(s)	1286
EcoRII	CCWGG	4 cut(s)	476, 714, 1546, 1694
EcoT14I	CCWWGG	5 cut(s)	423, 649, 1145, 1264, 1287
EcoT22I	ATGCAT	3 cut(s)	875, 1213, 1348
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	5 cut(s)	423, 649, 1145, 1264, 1287
Esp3I	CGTCTC	1 cut(s)	1545
FalI	AAGNNNNNCTT	4 cut(s)	226, 258, 1809, 1841
FaqI	GGGAC	2 cut(s)	85, 1310
FauI	CCCGC	2 cut(s)	30, 72
FauNDI	CATATG	2 cut(s)	1440, 1726
FbaI	TGATCA	3 cut(s)	637, 1009, 2197
FblI	GTMKAC	3 cut(s)	212, 321, 1895
Fnu4HI	GCNGC	6 cut(s)	26, 61, 79, 615, 806, 2015
FokI	GGATG	7 cut(s)	355, 1235, 1327, 1509, 1711, 2123, 2178
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	6 cut(s)	26, 61, 79, 615, 806, 2015
FspBI	CTAG	5 cut(s)	68, 227, 593, 1853, 2055
GluI	GCNGC	6 cut(s)	26, 61, 79, 615, 806, 2015
GsuI	CTGGAG	1 cut(s)	1569
HaeIII	GGCC	6 cut(s)	50, 63, 696, 879, 1041, 1656
HapII	CCGG	8 cut(s)	51, 339, 692, 742, 802, 960, 1095, 1418
HgaI	GACGC	1 cut(s)	2146
Hin1I	GRCGYC	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	213, 322
HindII	GTYRAC	2 cut(s)	213, 322
HinfI	GANTC	5 cut(s)	7, 209, 350, 525, 1385
HpaII	CCGG	8 cut(s)	51, 339, 692, 742, 802, 960, 1095, 1418
HphI	GGTGA	5 cut(s)	553, 931, 1220, 1598, 2143
Hpy166II	GTNNAC	8 cut(s)	213, 281, 322, 1246, 1414, 1475, 1733, 1896
Hpy188I	TCNGA	9 cut(s)	186, 194, 396, 460, 532, 738, 768, 1074, 2067
Hpy188III	TCNNGA	7 cut(s)	265, 313, 593, 641, 1377, 2121, 2195
Hpy8I	GTNNAC	8 cut(s)	213, 281, 322, 1246, 1414, 1475, 1733, 1896
Hpy99I	CGWCG	3 cut(s)	217, 396, 2003
HpyAV	CCTTC	5 cut(s)	310, 499, 1069, 1667, 2039
HpyCH4III	ACNGT	2 cut(s)	795, 1652
HpyCH4IV	ACGT	5 cut(s)	215, 277, 1425, 1580, 1633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 2060
HpyF3I	CTNAG	8 cut(s)	207, 603, 749, 1166, 1562, 1599, 1620, 1661
HpySE526I	ACGT	5 cut(s)	215, 277, 1425, 1580, 1633
Hsp92I	GRCGYC	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	801
KroNI	GCCGGC	1 cut(s)	803
Ksp22I	TGATCA	3 cut(s)	637, 1009, 2197
Kzo9I	GATC	9 cut(s)	127, 460, 637, 921, 1009, 1395, 1929, 2057, 2197
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	3 cut(s)	90, 1549, 1790
Lsp1109I	GCAGC	4 cut(s)	12, 90, 626, 2001
LweI	GCATC	4 cut(s)	1531, 1689, 2041, 2200
MaeI	CTAG	5 cut(s)	68, 227, 593, 1853, 2055
MaeII	ACGT	5 cut(s)	215, 277, 1425, 1580, 1633
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	9 cut(s)	129, 462, 639, 923, 1011, 1397, 1931, 2059, 2199
MboI	GATC	9 cut(s)	127, 460, 637, 921, 1009, 1395, 1929, 2057, 2197
MflI	RGATCY	2 cut(s)	1395, 2057
MhlI	GDGCHC	3 cut(s)	698, 780, 1735
MlyI	GAGTC	2 cut(s)	218, 359
MmeI	TCCRAC	4 cut(s)	374, 791, 1714, 1756
Mph1103I	ATGCAT	3 cut(s)	875, 1213, 1348
MroNI	GCCGGC	1 cut(s)	801
MroXI	GAANNNNTTC	1 cut(s)	1764
MseI	TTAA	9 cut(s)	258, 560, 1187, 1400, 1460, 1802, 1827, 1836, 2172
MslI	CAYNNNNRTG	1 cut(s)	1516
MspA1I	CMGCKG	1 cut(s)	25
MspCI	CTTAAG	1 cut(s)	559
MspI	CCGG	8 cut(s)	51, 339, 692, 742, 802, 960, 1095, 1418
MvaI	CCWGG	4 cut(s)	478, 716, 1548, 1696
MvnI	CGCG	1 cut(s)	926
MwoI	GCNNNNNNNGC	2 cut(s)	105, 2060
NaeI	GCCGGC	1 cut(s)	803
NciI	CCSGG	7 cut(s)	52, 339, 340, 693, 1096, 1418, 1419
NcoI	CCATGG	1 cut(s)	1264
NdeI	CATATG	2 cut(s)	1440, 1726
NdeII	GATC	9 cut(s)	127, 460, 637, 921, 1009, 1395, 1929, 2057, 2197
NgoMIV	GCCGGC	1 cut(s)	801
NlaIV	GGNNCC	7 cut(s)	73, 696, 765, 800, 964, 1081, 1151
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	3 cut(s)	875, 1213, 1348
NspI	RCATGY	4 cut(s)	602, 978, 1350, 2180
NspV	TTCGAA	1 cut(s)	710
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	1764
PfeI	GAWTC	3 cut(s)	7, 525, 1385
PflMI	CCANNNNNTGG	1 cut(s)	1293
PfoI	TCCNGGA	1 cut(s)	1546
PkrI	GCNGC	6 cut(s)	27, 62, 80, 616, 807, 2016
PleI	GAGTC	2 cut(s)	217, 358
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	2 cut(s)	217, 358
Ppu21I	YACGTR	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	1802
Psp6I	CCWGG	4 cut(s)	476, 714, 1546, 1694
PspCI	CACGTG	1 cut(s)	278
PspGI	CCWGG	4 cut(s)	476, 714, 1546, 1694
PspN4I	GGNNCC	7 cut(s)	73, 696, 765, 800, 964, 1081, 1151
PspOMI	GGGCCC	1 cut(s)	694
PspPI	GGNCC	8 cut(s)	48, 62, 72, 694, 695, 877, 1092, 1721
PstNI	CAGNNNCTG	1 cut(s)	1547
PsuI	RGATCY	2 cut(s)	1395, 2057
RsaI	GTAC	5 cut(s)	668, 1220, 1247, 1280, 2216
RsaNI	GTAC	5 cut(s)	667, 1219, 1246, 1279, 2215
RseI	CAYNNNNRTG	1 cut(s)	1516
SalI	GTCGAC	2 cut(s)	211, 320
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	9 cut(s)	258, 560, 1187, 1400, 1460, 1802, 1827, 1836, 2172
SatI	GCNGC	6 cut(s)	26, 61, 79, 615, 806, 2015
Sau3AI	GATC	9 cut(s)	127, 460, 637, 921, 1009, 1395, 1929, 2057, 2197
Sau96I	GGNCC	8 cut(s)	48, 62, 72, 694, 695, 877, 1092, 1721
ScaI	AGTACT	1 cut(s)	2216
SchI	GAGTC	2 cut(s)	218, 359
SduI	GDGCHC	3 cut(s)	698, 780, 1735
SfaNI	GCATC	4 cut(s)	1531, 1689, 2041, 2200
SfcI	CTRYAG	1 cut(s)	1641
SfuI	TTCGAA	1 cut(s)	710
SinI	GGWCC	3 cut(s)	72, 1092, 1721
SmaI	CCCGGG	2 cut(s)	340, 1419
SmiMI	CAYNNNNRTG	1 cut(s)	1516
SmlI	CTYRAG	4 cut(s)	263, 304, 559, 1740
SmoI	CTYRAG	4 cut(s)	263, 304, 559, 1740
SsiI	CCGC	6 cut(s)	23, 60, 65, 805, 838, 2183
SspMI	CTAG	5 cut(s)	68, 227, 593, 1853, 2055
StyI	CCWWGG	5 cut(s)	423, 649, 1145, 1264, 1287
TaaI	ACNGT	2 cut(s)	795, 1652
TaiI	ACGT	5 cut(s)	218, 280, 1428, 1583, 1636
TatI	WGTACW	3 cut(s)	666, 1245, 2214
TauI	GCSGC	2 cut(s)	63, 808
TfiI	GAWTC	3 cut(s)	7, 525, 1385
Tru1I	TTAA	9 cut(s)	258, 560, 1187, 1400, 1460, 1802, 1827, 1836, 2172
Tru9I	TTAA	9 cut(s)	258, 560, 1187, 1400, 1460, 1802, 1827, 1836, 2172
TscAI	CASTG	4 cut(s)	1395, 1477, 1657, 2038
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	4 cut(s)	25, 78, 614, 2014
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	8 cut(s)	308, 359, 886, 1040, 1398, 1559, 1988, 2055
TspGWI	ACGGA	1 cut(s)	1142
TspMI	CCCGGG	2 cut(s)	338, 1417
TspRI	CASTG	4 cut(s)	1395, 1477, 1657, 2038
Van91I	CCANNNNNTGG	1 cut(s)	1293
Vha464I	CTTAAG	1 cut(s)	559
VneI	GTGCAC	1 cut(s)	1731
VpaK11BI	GGWCC	3 cut(s)	72, 1092, 1721
VspI	ATTAAT	1 cut(s)	1802
XagI	CCTNNNNNAGG	1 cut(s)	1286
XapI	RAATTY	4 cut(s)	440, 453, 588, 893
XbaI	TCTAGA	1 cut(s)	592
XceI	RCATGY	4 cut(s)	602, 978, 1350, 2180
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2099, 2104
XmaI	CCCGGG	2 cut(s)	338, 1417
XmiI	GTMKAC	3 cut(s)	212, 321, 1895
XmnI	GAANNNNTTC	1 cut(s)	1764
XspI	CTAG	5 cut(s)	68, 227, 593, 1853, 2055
ZraI	GACGTC	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	2216
Zsp2I	ATGCAT	3 cut(s)	875, 1213, 1348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.