Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000260.1

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Reverse (-)

77800 .. 80958

Gene Structure 3159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3159 bp

atgttccgctctttcttcattacaggactatcttctcccactcacaaagcaaaactccgccgctcttcacaccctgctttcacttctctcaccgcctcacctctcctctcaaactcacttcaccacaccaaccaatcatctccgccccacatcgaaacccaaaccccacattccaatgctacttacggctatcttctcaatccgttcaaggactcccgtacctcaaacgaagccgaaacctttcatttgcggattttcaaacacgggttcactcaagatttgttcttgtgcaataccctcatcaacgtttacgtcaaaatcggtgctttggctaatgcacgtaagctgttcgacgaaatgcctgacaagaactcggttacttgggcttgcttgatttcggggtatgcccggagcggtgtgccagaggaggcgtgtgggcagtttaaacggatggtctgtgatggtttcgtgccgagtgtttatgcttttgggagtgttttaagggcttgccaggagttgggtccttgcaaacttaagtttgggatgcaagttcaggggttgttatcgaaaatgcatgattcggatgtgttgttagctaatgtgctgatgtcaatgtatgggagatgtttgggttctgccgatgatgcttaccgggctttttgtgagatcaagtttagaaatctagtgtcttggaattctattatttcggtttactgccaaagaggggatgcagtgtttgcttataagcttttctcaaacatgcagaaggatggtgtggattttgatttgcgaccgaatgagtatactttcggtagcttagtacctgcctgttgttctttggcggattatggtttggttttgctccagcaaatgctgagcagggtcagcaaaactggatttttacaagatttgtacgtaggaagtgctttggttagtggatttgcgagggttggattagttgattacgctaggaagatttttgagcagatgggtgagaggaatgcagtttcgatgaatgggttgatggttggactggtgaggcagaagcgaggagaagaagccactcaagttttcatggagatgaaggacttggttggaataaatattgattcgcttgtggttcttttaagttcattcactgaattttctgttttagaggaagggaaaagaaagggaagagaggttcatgcatatgtaattgcaactggtttgattaacagcaaggttgcaatagagaatgggcttgtaaatatgtatgctaaatgtggtgctattgatgatgcttgttcagttttcaggctcatggtagacagagacttaatctcatggaactctctgatctctggtctcgaccagaatgagaggtttgaagatgcagtaatgaagttctgtgaaatgagaaaatctgagttgaagccttcaattttcacattaattagtgctttgagttcgtgtgcaagcttggagtggatcatgatgggacagcaaatacattgtgaagcacttaaattgggacttgatttggatgtttcggtttcaaatgctcttcttgcattgtattccgacacagggtgtcttaatgaatcccggaatgttttcttcttgatgcaggagtatgaccaagtgtcgtggaattccatagttggggctttagctagttcagaggcttcagtttttgaagcggtagaatatttattggaaatgatgcgatctggatgggaacttaatagagtaacatttattagcattctttctgcagtttcatctctctcacttcacgagctaggccagcagattcatgctgtagttttaaaatacaatgctgcaaaggactgtgctattgagaatgcgcttattgcttgctatggaaagtgtggacagatagatgactgtgagaagatattttttagaatgcctgaaagaagggatgaagtaagttggaattccatgatttctggatacatacataatgagctcttgcccaaggccatggatttggtctggtttatgattgagaggggtcagaaattagactcttttacttttgctactgttctgagtgcttgtgcttcagttgcaacattagagcgtgggatggaagttcatgcttgtgcggtaagagcttatttggaatctgatgttgtagttgggagtgcacttgtcgacatgtattcaaagtgtggaaggattgattatgcttcaagattctttgagttgatgccagtaaggaatgtgtattcctggaattcattaatatcaggatatgctcgcaatggagatggacagaaagctctgaggcttttcacacaaatgaagcaacaagatcagccgccagatcacgtttcctttgttggggtcctatcagcttgtagccatgcagggctcgtagatgaagggtttcagcatttcaattccatgagtaaagtacatggactggctcctaggatggagcacttttcatgtatggttgatcttcttggaagggcaggaaaaattaacatgatagaggacttcatcaaaaaaatgccaatgaagcctaatgtgcttatttggaggacagttttagggtcttgttgccgaggcaatgatcgtaacacagagctaggcaggatggctggtgaaatgcttttggagttggaaccccaaaatgctgtgaactatgtgcttcttgctaacatgtatgcttctggtgggaagtgggatgacgtggcaaaggctaggatgacaatgagaaaggcagcagtgaagaaggaagctgggtgcagttgggtcaccatgaaagatggagttcatgtttttgtagctggggacaaattacacccagagaaagatttgatatatgaaaaactgaaggaacttaacaagaaaatgaggaatgctggatatgtgcctgaaacaaaatttgcactatacgatctcgaactggagaacaaggaagaactcctgagttatcacagtgaaaagcttgctgttgcatatgttcttactcgccagtcacagttgcctataaggattatgaaaaaccttcgggtttgtggtgactgccacactgccttcaaatacatatcaaatattgttggcaggcaaatagtattacgcgattcaaacagatttcatcactttcaagatggcaagtgttcttgcggggatttctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1052

Amino Acids

117.9

Weight (kDa)

7.09

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	123 - 170	1.5e-07	PPR repeat family
PPR_2	PF13041	227 - 278	6.2e-11	PPR repeat family
PPR	PF01535	229 - 259	1.5e-06	PPR repeat
PPR_2	PF13041	439 - 486	5.8e-07	PPR repeat family
PPR_2	PF13041	643 - 690	1.3e-08	PPR repeat family
PPR_2	PF13041	743 - 791	1.2e-11	PPR repeat family
PPR_1	PF12854	743 - 772	8.2e-06	PPR repeat
PPR	PF01535	746 - 773	5.6e-08	PPR repeat
E_motif	PF20431	865 - 924	1.9e-19	E motif
Eplus_motif	PF20430	930 - 957	6.5e-06	E+ motif
DYW_deaminase	PF14432	961 - 1052	6.5e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
Acc36I	ACCTGC	1 cut(s)	832
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccBSI	CCGCTC	3 cut(s)	9, 63, 414
AccI	GTMKAC	3 cut(s)	803, 1308, 2163
AccII	CGCG	1 cut(s)	3099
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	1 cut(s)	1478
AcsI	RAATTY	6 cut(s)	694, 1142, 1633, 1942, 2245, 2900
AcuI	CTGAAG	3 cut(s)	1653, 2055, 2870
AdeI	CACNNNGTG	1 cut(s)	1572
AfaI	GTAC	4 cut(s)	220, 822, 914, 2427
AfiI	CCNNNNNNNGG	5 cut(s)	517, 724, 1569, 1644, 2352
AflII	CTTAAG	1 cut(s)	533
AflIII	ACRYGT	2 cut(s)	2166, 2676
AhdI	GACNNNNNGTC	1 cut(s)	1624
AjiI	CACGTC	1 cut(s)	2707
AjnI	CCWGG	2 cut(s)	510, 2240
AloI	GAACNNNNNNTCC	2 cut(s)	1167, 1199
Alw21I	GWGCWC	3 cut(s)	1977, 2158, 2454
Alw26I	GTCTC	2 cut(s)	1308, 1352
Alw44I	GTGCAC	1 cut(s)	2154
AlwI	GGATC	1 cut(s)	1478
AoxI	GGCC	2 cut(s)	1786, 1986
ApaLI	GTGCAC	1 cut(s)	2154
ApeKI	GCWGC	2 cut(s)	1823, 2738
ApoI	RAATTY	6 cut(s)	694, 1142, 1633, 1942, 2245, 2900
AseI	ATTAAT	2 cut(s)	1433, 2252
Asp700I	GAANNNNTTC	3 cut(s)	240, 1595, 2397
AspA2I	CCTAGG	1 cut(s)	2441
AspLEI	GCGC	1 cut(s)	1852
AspS9I	GGNCC	2 cut(s)	521, 2356
AsuC2I	CCSGG	3 cut(s)	409, 653, 1588
AsuHPI	GGTGA	8 cut(s)	82, 90, 113, 1004, 1048, 2630, 2764, 3050
AvaII	GGWCC	2 cut(s)	521, 2356
AvrII	CCTAGG	1 cut(s)	2441
BaeGI	GKGCMC	1 cut(s)	2158
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BanII	GRGCYC	2 cut(s)	1977, 2385
BauI	CACGAG	1 cut(s)	1778
Bbv12I	GWGCWC	3 cut(s)	1977, 2158, 2454
BbvI	GCAGC	2 cut(s)	1810, 2750
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	512, 2242
BciVI	GTATCC	1 cut(s)	1952
BcnI	CCSGG	3 cut(s)	409, 653, 1588
BcoDI	GTCTC	2 cut(s)	1308, 1352
BfaI	CTAG	7 cut(s)	683, 969, 1656, 1784, 2442, 2603, 2718
BfmI	CTRYAG	2 cut(s)	1755, 1803
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	832
BfuI	GTATCC	1 cut(s)	1952
BisI	GCNGC	4 cut(s)	61, 1824, 2330, 2739
BlnI	CCTAGG	1 cut(s)	2441
BlpI	GCTNAGC	1 cut(s)	875
BlsI	GCNGC	4 cut(s)	62, 1825, 2331, 2740
Bme1390I	CCNGG	5 cut(s)	409, 512, 653, 1588, 2242
Bme18I	GGWCC	2 cut(s)	521, 2356
BmeRI	GACNNNNNGTC	1 cut(s)	1624
BmgBI	CACGTC	1 cut(s)	2707
BmgT120I	GGNCC	2 cut(s)	521, 2356
BmiI	GGNNCC	4 cut(s)	522, 2357, 2439, 2640
BmrFI	CCNGG	5 cut(s)	409, 512, 653, 1588, 2242
BmsI	GCATC	8 cut(s)	534, 634, 718, 1270, 1363, 1596, 1695, 2208
BpmI	CTGGAG	2 cut(s)	848, 2945
Bpu1102I	GCTNAGC	1 cut(s)	875
BpuEI	CTTGAG	2 cut(s)	258, 1050
BpuMI	CCSGG	3 cut(s)	409, 653, 1588
BsaAI	YACGTR	2 cut(s)	341, 916
BsaI	GGTCTC	1 cut(s)	1352
BsaJI	CCNNGG	4 cut(s)	1983, 1989, 2441, 2578
BsaXI	ACNNNNNCTCC	2 cut(s)	2778, 2808
Bsc4I	CCNNNNNNNGG	5 cut(s)	517, 724, 1569, 1644, 2352
Bse1I	ACTGG	7 cut(s)	898, 1038, 1210, 2222, 2439, 2928, 2992
Bse3DI	GCAATG	2 cut(s)	2278, 2590
BseBI	CCWGG	2 cut(s)	512, 2242
BseDI	CCNNGG	4 cut(s)	1983, 1989, 2441, 2578
BseLI	CCNNNNNNNGG	5 cut(s)	517, 724, 1569, 1644, 2352
BseMI	GCAATG	2 cut(s)	2278, 2590
BseMII	CTCAG	5 cut(s)	866, 1398, 2048, 2285, 2936
BseNI	ACTGG	7 cut(s)	898, 1038, 1210, 2222, 2439, 2928, 2992
BseRI	GAGGAG	3 cut(s)	95, 440, 1065
BseSI	GKGCMC	1 cut(s)	2158
BseXI	GCAGC	2 cut(s)	1810, 2750
BseYI	CCCAGC	2 cut(s)	2756, 2804
BsgI	GTGCAG	1 cut(s)	2782
Bsh1236I	CGCG	1 cut(s)	3099
Bsh1285I	CGRYCG	1 cut(s)	794
BshFI	GGCC	2 cut(s)	1788, 1988
BsiEI	CGRYCG	1 cut(s)	794
BsiHKAI	GWGCWC	3 cut(s)	1977, 2158, 2454
BsiSI	CCGG	3 cut(s)	409, 652, 1588
BslFI	GGGAC	3 cut(s)	1494, 1527, 2822
BslI	CCNNNNNNNGG	5 cut(s)	517, 724, 1569, 1644, 2352
BsmAI	GTCTC	2 cut(s)	1308, 1352
BsmFI	GGGAC	3 cut(s)	1494, 1527, 2822
BsmI	GAATGC	5 cut(s)	1006, 1746, 1852, 1917, 2881
BsnI	GGCC	2 cut(s)	1788, 1988
Bso31I	GGTCTC	1 cut(s)	1352
Bsp1286I	GDGCHC	4 cut(s)	1977, 2158, 2385, 2454
Bsp143I	GATC	9 cut(s)	666, 1338, 1470, 1709, 2323, 2335, 2470, 2587, 2914
Bsp1720I	GCTNAGC	1 cut(s)	875
Bsp19I	CCATGG	1 cut(s)	1989
BspANI	GGCC	2 cut(s)	1788, 1988
BspCNI	CTCAG	5 cut(s)	867, 1399, 2049, 2286, 2937
BspFNI	CGCG	1 cut(s)	3099
BspHI	TCATGA	1 cut(s)	1473
BspLI	GGNNCC	4 cut(s)	522, 2357, 2439, 2640
BspMAI	CTGCAG	1 cut(s)	1759
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	1 cut(s)	1478
BspQI	GCTCTTC	2 cut(s)	70, 1551
BspTI	CTTAAG	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	1352
BsrBI	CCGCTC	3 cut(s)	9, 63, 414
BsrDI	GCAATG	2 cut(s)	2278, 2590
BsrI	ACTGG	7 cut(s)	898, 1038, 1210, 2222, 2439, 2928, 2992
BssECI	CCNNGG	4 cut(s)	1983, 1989, 2441, 2578
BssMI	GATC	9 cut(s)	666, 1338, 1470, 1709, 2323, 2335, 2470, 2587, 2914
BssNAI	GTATAC	1 cut(s)	804
BssSI	CACGAG	1 cut(s)	1778
BssT1I	CCWWGG	3 cut(s)	1983, 1989, 2441
Bst1107I	GTATAC	1 cut(s)	804
Bst2BI	CACGAG	1 cut(s)	1778
Bst2UI	CCWGG	2 cut(s)	512, 2242
Bst4CI	ACNGT	6 cut(s)	1835, 1892, 2053, 2560, 2957, 3000
Bst6I	CTCTTC	3 cut(s)	70, 1171, 1551
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	2 cut(s)	341, 916
BstC8I	GCNNGC	8 cut(s)	388, 508, 1459, 1790, 1861, 2269, 2967, 3083
BstDEI	CTNAG	6 cut(s)	817, 875, 1407, 2057, 2294, 2945
BstDSI	CCRYGG	1 cut(s)	1989
BstEII	GGTNACC	1 cut(s)	2770
BstFNI	CGCG	1 cut(s)	3099
BstHHI	GCGC	1 cut(s)	1852
BstKTI	GATC	9 cut(s)	669, 1341, 1473, 1712, 2326, 2338, 2473, 2590, 2917
BstMAI	GTCTC	2 cut(s)	1308, 1352
BstMBI	GATC	9 cut(s)	666, 1338, 1470, 1709, 2323, 2335, 2470, 2587, 2914
BstMCI	CGRYCG	1 cut(s)	794
BstNI	CCWGG	2 cut(s)	512, 2242
BstNSI	RCATGY	3 cut(s)	763, 2170, 2680
BstPI	GGTNACC	1 cut(s)	2770
BstSCI	CCNGG	5 cut(s)	407, 510, 651, 1586, 2240
BstSFI	CTRYAG	2 cut(s)	1755, 1803
BstSLI	GKGCMC	1 cut(s)	2158
BstSNI	TACGTA	1 cut(s)	916
BstUI	CGCG	1 cut(s)	3099
BstV1I	GCAGC	2 cut(s)	1810, 2750
BstXI	CCANNNNNNTGG	2 cut(s)	1990, 1996
BstZ17I	GTATAC	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	1952
BsuRI	GGCC	2 cut(s)	1788, 1988
BtgI	CCRYGG	1 cut(s)	1989
BtrI	CACGTC	1 cut(s)	2707
BtsI	GCAGTG	3 cut(s)	738, 2748, 3048
BtsIMutI	CAGTG	5 cut(s)	738, 1137, 2748, 2962, 3048
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	8 cut(s)	388, 508, 1459, 1790, 1861, 2269, 2967, 3083
CciI	TCATGA	1 cut(s)	1473
CfoI	GCGC	1 cut(s)	1852
Cfr13I	GGNCC	2 cut(s)	521, 2356
Csp6I	GTAC	4 cut(s)	219, 821, 913, 2426
CspCI	CAANNNNNGTGG	2 cut(s)	1610, 1645
CviQI	GTAC	4 cut(s)	219, 821, 913, 2426
DdeI	CTNAG	6 cut(s)	817, 875, 1407, 2057, 2294, 2945
DpnI	GATC	9 cut(s)	668, 1340, 1472, 1711, 2325, 2337, 2472, 2589, 2916
DpnII	GATC	9 cut(s)	666, 1338, 1470, 1709, 2323, 2335, 2470, 2587, 2914
DraI	TTTAAA	2 cut(s)	445, 1812
DraIII	CACNNNGTG	1 cut(s)	1572
DriI	GACNNNNNGTC	1 cut(s)	1624
Eam1104I	CTCTTC	3 cut(s)	70, 1171, 1551
Eam1105I	GACNNNNNGTC	1 cut(s)	1624
EarI	CTCTTC	3 cut(s)	70, 1171, 1551
EciI	GGCGGA	3 cut(s)	47, 132, 857
Ecl136II	GAGCTC	1 cut(s)	1975
Eco105I	TACGTA	1 cut(s)	916
Eco130I	CCWWGG	3 cut(s)	1983, 1989, 2441
Eco24I	GRGCYC	2 cut(s)	1977, 2385
Eco31I	GGTCTC	1 cut(s)	1352
Eco47I	GGWCC	2 cut(s)	521, 2356
Eco53kI	GAGCTC	1 cut(s)	1975
Eco57I	CTGAAG	3 cut(s)	1653, 2055, 2870
Eco91I	GGTNACC	1 cut(s)	2770
EcoICRI	GAGCTC	1 cut(s)	1975
EcoO109I	RGGNCCY	2 cut(s)	521, 2356
EcoO65I	GGTNACC	1 cut(s)	2770
EcoRI	GAATTC	4 cut(s)	694, 1633, 1942, 2245
EcoRII	CCWGG	2 cut(s)	510, 2240
EcoT14I	CCWWGG	3 cut(s)	1983, 1989, 2441
EcoT22I	ATGCAT	2 cut(s)	576, 1192
EcoT38I	GRGCYC	2 cut(s)	1977, 2385
ErhI	CCWWGG	3 cut(s)	1983, 1989, 2441
FaqI	GGGAC	3 cut(s)	1494, 1527, 2822
FauI	CCCGC	1 cut(s)	3137
FauNDI	CATATG	2 cut(s)	1192, 2977
FblI	GTMKAC	3 cut(s)	803, 1308, 2163
Fnu4HI	GCNGC	4 cut(s)	61, 1824, 2330, 2739
FriOI	GRGCYC	2 cut(s)	1977, 2385
Fsp4HI	GCNGC	4 cut(s)	61, 1824, 2330, 2739
FspBI	CTAG	7 cut(s)	683, 969, 1656, 1784, 2442, 2603, 2718
GlaI	GCGC	1 cut(s)	1851
GluI	GCNGC	4 cut(s)	61, 1824, 2330, 2739
GsaI	CCCAGC	2 cut(s)	2760, 2808
GsuI	CTGGAG	2 cut(s)	848, 2945
HaeIII	GGCC	2 cut(s)	1788, 1988
HapII	CCGG	3 cut(s)	409, 652, 1588
HhaI	GCGC	1 cut(s)	1852
Hin6I	GCGC	1 cut(s)	1850
HinP1I	GCGC	1 cut(s)	1850
HincII	GTYRAC	1 cut(s)	2164
HindII	GTYRAC	1 cut(s)	2164
HindIII	AAGCTT	3 cut(s)	746, 1459, 2963
HinfI	GANTC	9 cut(s)	212, 578, 1109, 1583, 1795, 2033, 2132, 2205, 3101
HpaII	CCGG	3 cut(s)	409, 652, 1588
HphI	GGTGA	8 cut(s)	82, 90, 113, 1004, 1048, 2630, 2764, 3050
Hpy166II	GTNNAC	9 cut(s)	270, 310, 712, 804, 1309, 1877, 2156, 2164, 2656
Hpy188I	TCNGA	9 cut(s)	583, 1338, 1408, 1564, 1663, 2025, 2058, 2137, 2295
Hpy8I	GTNNAC	9 cut(s)	270, 310, 712, 804, 1309, 1877, 2156, 2164, 2656
Hpy99I	CGWCG	1 cut(s)	356
HpyCH4III	ACNGT	6 cut(s)	1835, 1892, 2053, 2560, 2957, 3000
HpyCH4IV	ACGT	6 cut(s)	306, 312, 340, 915, 2340, 2706
HpyF3I	CTNAG	6 cut(s)	817, 875, 1407, 2057, 2294, 2945
HpySE526I	ACGT	6 cut(s)	306, 312, 340, 915, 2340, 2706
HspAI	GCGC	1 cut(s)	1850
Kzo9I	GATC	9 cut(s)	666, 1338, 1470, 1709, 2323, 2335, 2470, 2587, 2914
LguI	GCTCTTC	2 cut(s)	70, 1551
LmnI	GCTCC	4 cut(s)	411, 867, 2443, 2449
Lsp1109I	GCAGC	2 cut(s)	1810, 2750
LweI	GCATC	8 cut(s)	534, 634, 718, 1270, 1363, 1596, 1695, 2208
MaeI	CTAG	7 cut(s)	683, 969, 1656, 1784, 2442, 2603, 2718
MaeII	ACGT	6 cut(s)	306, 312, 340, 915, 2340, 2706
MaeIII	GTNAC	6 cut(s)	376, 1732, 2591, 2770, 2994, 3038
MalI	GATC	9 cut(s)	668, 1340, 1472, 1711, 2325, 2337, 2472, 2589, 2916
MbiI	CCGCTC	3 cut(s)	9, 63, 414
MboI	GATC	9 cut(s)	666, 1338, 1470, 1709, 2323, 2335, 2470, 2587, 2914
MhlI	GDGCHC	4 cut(s)	1977, 2158, 2385, 2454
MlyI	GAGTC	2 cut(s)	206, 2027
MmeI	TCCRAC	6 cut(s)	931, 1009, 1075, 1587, 1919, 2616
Mph1103I	ATGCAT	2 cut(s)	576, 1192
MroXI	GAANNNNTTC	3 cut(s)	240, 1595, 2397
MslI	CAYNNNNRTG	5 cut(s)	174, 1079, 1191, 2109, 2309
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	3 cut(s)	409, 652, 1588
MspR9I	CCNGG	5 cut(s)	409, 512, 653, 1588, 2242
MssI	GTTTAAAC	1 cut(s)	445
Mva1269I	GAATGC	5 cut(s)	1006, 1746, 1852, 1917, 2881
MvaI	CCWGG	2 cut(s)	512, 2242
MvnI	CGCG	1 cut(s)	3099
NciI	CCSGG	3 cut(s)	409, 653, 1588
NcoI	CCATGG	1 cut(s)	1989
NdeI	CATATG	2 cut(s)	1192, 2977
NdeII	GATC	9 cut(s)	666, 1338, 1470, 1709, 2323, 2335, 2470, 2587, 2914
NlaIV	GGNNCC	4 cut(s)	522, 2357, 2439, 2640
NmeAIII	GCCGAG	2 cut(s)	498, 2603
NmuCI	GTSAC	3 cut(s)	2770, 2994, 3038
NsiI	ATGCAT	2 cut(s)	576, 1192
NspI	RCATGY	3 cut(s)	763, 2170, 2680
PagI	TCATGA	1 cut(s)	1473
PciI	ACATGT	2 cut(s)	2166, 2676
PciSI	GCTCTTC	2 cut(s)	70, 1551
PctI	GAATGC	5 cut(s)	1006, 1746, 1852, 1917, 2881
PdmI	GAANNNNTTC	3 cut(s)	240, 1595, 2397
PfeI	GAWTC	7 cut(s)	578, 1109, 1583, 1795, 2132, 2205, 3101
PflMI	CCANNNNNTGG	1 cut(s)	517
PfoI	TCCNGGA	2 cut(s)	1586, 2240
PkrI	GCNGC	4 cut(s)	62, 1825, 2331, 2740
PleI	GAGTC	2 cut(s)	206, 2027
PmeI	GTTTAAAC	1 cut(s)	445
PpsI	GAGTC	2 cut(s)	206, 2027
Ppu21I	YACGTR	2 cut(s)	341, 916
PpuMI	RGGWCCY	2 cut(s)	521, 2356
PscI	ACATGT	2 cut(s)	2166, 2676
PshBI	ATTAAT	2 cut(s)	1433, 2252
PsiI	TTATAA	1 cut(s)	744
Psp124BI	GAGCTC	1 cut(s)	1977
Psp1406I	AACGTT	1 cut(s)	306
Psp5II	RGGWCCY	2 cut(s)	521, 2356
Psp6I	CCWGG	2 cut(s)	510, 2240
PspEI	GGTNACC	1 cut(s)	2770
PspFI	CCCAGC	2 cut(s)	2756, 2804
PspGI	CCWGG	2 cut(s)	510, 2240
PspN4I	GGNNCC	4 cut(s)	522, 2357, 2439, 2640
PspPI	GGNCC	2 cut(s)	521, 2356
PspPPI	RGGWCCY	2 cut(s)	521, 2356
PstI	CTGCAG	1 cut(s)	1759
RsaI	GTAC	4 cut(s)	220, 822, 914, 2427
RsaNI	GTAC	4 cut(s)	219, 821, 913, 2426
RseI	CAYNNNNRTG	5 cut(s)	174, 1079, 1191, 2109, 2309
SacI	GAGCTC	1 cut(s)	1977
SalI	GTCGAC	1 cut(s)	2162
SapI	GCTCTTC	2 cut(s)	70, 1551
SatI	GCNGC	4 cut(s)	61, 1824, 2330, 2739
Sau3AI	GATC	9 cut(s)	666, 1338, 1470, 1709, 2323, 2335, 2470, 2587, 2914
Sau96I	GGNCC	2 cut(s)	521, 2356
SchI	GAGTC	2 cut(s)	206, 2027
ScrFI	CCNGG	5 cut(s)	409, 512, 653, 1588, 2242
SduI	GDGCHC	4 cut(s)	1977, 2158, 2385, 2454
SfaNI	GCATC	8 cut(s)	534, 634, 718, 1270, 1363, 1596, 1695, 2208
SfcI	CTRYAG	2 cut(s)	1755, 1803
SinI	GGWCC	2 cut(s)	521, 2356
SmiMI	CAYNNNNRTG	5 cut(s)	174, 1079, 1191, 2109, 2309
SmlI	CTYRAG	3 cut(s)	273, 533, 1065
SmoI	CTYRAG	3 cut(s)	273, 533, 1065
SnaBI	TACGTA	1 cut(s)	916
SspI	AATATT	3 cut(s)	1105, 1691, 3073
SspMI	CTAG	7 cut(s)	683, 969, 1656, 1784, 2442, 2603, 2718
SstI	GAGCTC	1 cut(s)	1977
StyD4I	CCNGG	5 cut(s)	407, 510, 651, 1586, 2240
StyI	CCWWGG	3 cut(s)	1983, 1989, 2441
TaaI	ACNGT	6 cut(s)	1835, 1892, 2053, 2560, 2957, 3000
TaiI	ACGT	6 cut(s)	309, 315, 343, 918, 2343, 2709
TaqI	TCGA	7 cut(s)	153, 351, 566, 1010, 1350, 2163, 2919
TaqII	GACCGA	1 cut(s)	808
TatI	WGTACW	1 cut(s)	2425
TauI	GCSGC	2 cut(s)	63, 2332
TfiI	GAWTC	7 cut(s)	578, 1109, 1583, 1795, 2132, 2205, 3101
TscAI	CASTG	5 cut(s)	738, 1144, 2748, 2962, 3055
TseFI	GTSAC	3 cut(s)	2770, 2994, 3038
TseI	GCWGC	2 cut(s)	1823, 2738
Tsp45I	GTSAC	3 cut(s)	2770, 2994, 3038
TspGWI	ACGGA	2 cut(s)	192, 463
TspRI	CASTG	5 cut(s)	738, 1144, 2748, 2962, 3055
Van91I	CCANNNNNTGG	1 cut(s)	517
Vha464I	CTTAAG	1 cut(s)	533
VneI	GTGCAC	1 cut(s)	2154
VpaK11BI	GGWCC	2 cut(s)	521, 2356
VspI	ATTAAT	2 cut(s)	1433, 2252
XapI	RAATTY	6 cut(s)	694, 1142, 1633, 1942, 2245, 2900
XceI	RCATGY	3 cut(s)	763, 2170, 2680
XmaJI	CCTAGG	1 cut(s)	2441
XmiI	GTMKAC	3 cut(s)	803, 1308, 2163
XmnI	GAANNNNTTC	3 cut(s)	240, 1595, 2397
XspI	CTAG	7 cut(s)	683, 969, 1656, 1784, 2442, 2603, 2718
Zsp2I	ATGCAT	2 cut(s)	576, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.