Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000381.1

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Forward (+)

63290 .. 63902

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgcagactcggttctcagccctgacccgaaccctaaactccatgacccgatccttctcctcttccacgccgtcaaccacctcctcctcccaattgcctcctccgtgctcaactcgccgccgatctcccactcacggaattcgtcgaaggcgaaggtctgtactccgtggaggtcgagacacgaagaagaagccgctgcagaagccaaaatggatggagtcgatcccggccggcgagaagtacatgcagattaagaagaagctcagggaattgaagctccacacagtctgcgaggaggccaagtgtcccaatctcggtgagtgctggtccgacggaggtttaaggcggcgaaaccgccactaccaccaccactatcatgattcttggcaacaagtgtacgcgcggttgcagacttctaggactccgccgctgctggaccccaatgagccgacgaatgtggaggaggcgattgcgtcgtgggggttggattgtggtgaatacttgagtggaccgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

172

Amino Acids

19.87

Weight (kDa)

10.32

Isoelectric Point (pI)

84.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	61 - 102	7.6e-12	N-terminal domain of lipoyl synthase of Radical_SAM family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	401, 403
AciI	CCGC	7 cut(s)	118, 194, 346, 355, 403, 425, 428
AclWI	GGATC	2 cut(s)	45, 217
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	3 cut(s)	162, 242, 398
AfiI	CCNNNNNNNGG	2 cut(s)	134, 314
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	2 cut(s)	262, 277
AluI	AGCT	2 cut(s)	262, 277
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	45, 217
AoxI	GGCC	2 cut(s)	228, 297
ApeKI	GCWGC	2 cut(s)	196, 430
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	3 cut(s)	327, 436, 509
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	329, 506
AvaII	GGWCC	3 cut(s)	327, 436, 509
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	183, 417
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	1 cut(s)	197
BisI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
BlsI	GCNGC	6 cut(s)	119, 195, 198, 348, 429, 432
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	3 cut(s)	327, 436, 509
BmgT120I	GGNCC	3 cut(s)	327, 436, 509
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 314
Bse118I	RCCGGY	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	134, 314
BseMII	CTCAG	2 cut(s)	30, 277
BseRI	GAGGAG	6 cut(s)	49, 73, 76, 90, 308, 476
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	183, 417
Bsh1236I	CGCG	2 cut(s)	401, 403
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	230, 299
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	227, 231
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	134, 314
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	230, 299
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	50, 122, 222
BspACI	CCGC	7 cut(s)	118, 194, 346, 355, 403, 425, 428
BspANI	GGCC	2 cut(s)	230, 299
BspCNI	CTCAG	2 cut(s)	29, 276
BspFNI	CGCG	2 cut(s)	401, 403
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	201
BspPI	GGATC	2 cut(s)	45, 217
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	50, 122, 222
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	16, 263
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	2 cut(s)	401, 403
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	3 cut(s)	53, 125, 225
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	50, 122, 222
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 202
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	197
BstUI	CGCG	2 cut(s)	401, 403
BstV1I	GCAGC	2 cut(s)	183, 417
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	230, 299
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	232
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	327, 436, 509
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	161, 241, 397
CviAII	CATG	3 cut(s)	43, 244, 377
CviJI	RGCY	8 cut(s)	20, 193, 205, 230, 262, 277, 299, 448
CviKI_1	RGCY	8 cut(s)	20, 193, 205, 230, 262, 277, 299, 448
CviQI	GTAC	3 cut(s)	161, 241, 397
DdeI	CTNAG	2 cut(s)	16, 263
DpnI	GATC	3 cut(s)	52, 124, 224
DpnII	GATC	3 cut(s)	50, 122, 222
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	414
EclXI	CGGCCG	1 cut(s)	228
Eco47I	GGWCC	3 cut(s)	327, 436, 509
Eco52I	CGGCCG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	138
FaeI	CATG	3 cut(s)	46, 247, 380
FaiI	YATR	3 cut(s)	44, 245, 378
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	3 cut(s)	42, 243, 376
Fnu4HI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
HaeIII	GGCC	2 cut(s)	230, 299
HapII	CCGG	2 cut(s)	227, 231
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	3 cut(s)	46, 247, 380
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	4 cut(s)	7, 218, 380, 421
HpaII	CCGG	2 cut(s)	227, 231
HphI	GGTGA	2 cut(s)	329, 506
Hpy166II	GTNNAC	3 cut(s)	75, 397, 509
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	176, 377
Hpy8I	GTNNAC	3 cut(s)	75, 397, 509
Hpy99I	CGWCG	4 cut(s)	147, 335, 454, 478
HpyAV	CCTTC	3 cut(s)	64, 141, 147
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	4, 199, 247, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 202
HpyF3I	CTNAG	2 cut(s)	16, 263
Hsp92II	CATG	3 cut(s)	46, 247, 380
HspAI	GCGC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	50, 122, 222
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	6 cut(s)	35, 240, 244, 250, 310, 419
Lsp1109I	GCAGC	2 cut(s)	183, 417
MaeI	CTAG	1 cut(s)	417
MalI	GATC	3 cut(s)	52, 124, 224
MboI	GATC	3 cut(s)	50, 122, 222
MboII	GAAGA	4 cut(s)	54, 196, 199, 268
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	3 cut(s)	92, 138, 269
MlyI	GAGTC	2 cut(s)	227, 415
MmeI	TCCRAC	2 cut(s)	354, 465
MroNI	GCCGGC	1 cut(s)	230
MseI	TTAA	2 cut(s)	252, 341
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	2 cut(s)	196, 430
MspI	CCGG	2 cut(s)	227, 231
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	401, 403
MwoI	GCNNNNNNNGC	2 cut(s)	114, 202
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	50, 122, 222
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	3 cut(s)	46, 247, 380
NlaIV	GGNNCC	1 cut(s)	438
NspI	RCATGY	1 cut(s)	247
PagI	TCATGA	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	119, 195, 198, 348, 429, 432
PleI	GAGTC	2 cut(s)	226, 415
PpsI	GAGTC	2 cut(s)	226, 415
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	3 cut(s)	327, 436, 509
PstI	CTGCAG	1 cut(s)	201
RsaI	GTAC	3 cut(s)	162, 242, 398
RsaNI	GTAC	3 cut(s)	161, 241, 397
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	252, 341
SatI	GCNGC	6 cut(s)	118, 194, 197, 347, 428, 431
Sau3AI	GATC	3 cut(s)	50, 122, 222
Sau96I	GGNCC	3 cut(s)	327, 436, 509
SchI	GAGTC	2 cut(s)	227, 415
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	83, 158, 175, 264, 279, 340
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	3 cut(s)	327, 436, 509
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	3 cut(s)	92, 138, 269
SsiI	CCGC	7 cut(s)	118, 194, 346, 355, 403, 425, 428
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	3 cut(s)	145, 175, 221
TasI	AATT	3 cut(s)	92, 138, 269
TatI	WGTACW	2 cut(s)	160, 240
TauI	GCSGC	4 cut(s)	120, 196, 349, 430
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	252, 341
Tru9I	TTAA	2 cut(s)	252, 341
TseI	GCWGC	2 cut(s)	196, 430
TspGWI	ACGGA	4 cut(s)	93, 150, 155, 348
VpaK11BI	GGWCC	3 cut(s)	327, 436, 509
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.