Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000408.1

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

12278 .. 13818

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggctacattcagatttatcgccgactccaaagtccaaacacatcatgaccgacaactcgacgaggtccactgcgtcttcaagagcttcgactccaacgacgactgcaagatctcaacctcggagcttggcaatttccttaaggccctaggctccaacgtcccctacgacgagctccgcagctcctttgcaccacagtgtggcgcgctgtggcaaggtgtggcgtgctatggcagctctgtagctcactgtggcgcgctgtggcaaggtgtggagcgatgtggcagcgctatggcaaggtgttctagggttttaggatttttggtttttgagatttcaggattaggggttcgtgatgataacatgtttaaggaaatcgaaattgggagagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

131

Amino Acids

14.48

Weight (kDa)

5.52

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccII	CGCG	2 cut(s)	206, 257
AciI	CCGC	1 cut(s)	178
AdeI	CACNNNGTG	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflII	CTTAAG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	1 cut(s)	366
AleI	CACNNNNGTG	1 cut(s)	196
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	6 cut(s)	87, 127, 175, 183, 237, 245
AluI	AGCT	6 cut(s)	87, 127, 175, 183, 237, 245
Alw21I	GWGCWC	1 cut(s)	177
Aor51HI	AGCGCT	1 cut(s)	289
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	180, 234, 285
AspA2I	CCTAGG	1 cut(s)	148
AspLEI	GCGC	5 cut(s)	206, 208, 257, 259, 290
AspS9I	GGNCC	2 cut(s)	67, 145
AvaII	GGWCC	1 cut(s)	67
AvrII	CCTAGG	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	192, 246, 297
BfaI	CTAG	2 cut(s)	149, 306
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	291
BfrI	CTTAAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	3 cut(s)	181, 235, 286
BlnI	CCTAGG	1 cut(s)	148
BlsI	GCNGC	3 cut(s)	182, 236, 287
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	67, 145
BmiI	GGNNCC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	120, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	120, 148
BseLI	CCNNNNNNNGG	1 cut(s)	200
BsePI	GCGCGC	2 cut(s)	204, 255
BseXI	GCAGC	3 cut(s)	192, 246, 297
Bsh1236I	CGCG	2 cut(s)	206, 257
BshFI	GGCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	2 cut(s)	206, 257
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	120, 148
BssHII	GCGCGC	2 cut(s)	204, 255
BssMI	GATC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	198, 251
BstAFI	CTTAAG	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	206, 226, 257
BstFNI	CGCG	2 cut(s)	206, 257
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	5 cut(s)	206, 208, 257, 259, 290
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	2 cut(s)	206, 257
BstV1I	GCAGC	3 cut(s)	192, 246, 297
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	3 cut(s)	70, 203, 247
Cac8I	GCNNGC	3 cut(s)	206, 226, 257
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	5 cut(s)	206, 208, 257, 259, 290
Cfr13I	GGNCC	2 cut(s)	67, 145
CseI	GACGC	1 cut(s)	64
CviAII	CATG	2 cut(s)	47, 364
CviJI	RGCY	9 cut(s)	5, 87, 127, 146, 153, 175, 183, 237, 245
CviKI_1	RGCY	9 cut(s)	5, 87, 127, 146, 153, 175, 183, 237, 245
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DraIII	CACNNNGTG	1 cut(s)	200
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	67
Eco47III	AGCGCT	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	50, 367
FaiI	YATR	4 cut(s)	48, 231, 293, 365
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	46, 363
Fnu4HI	GCNGC	3 cut(s)	181, 235, 286
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	181, 235, 286
FspBI	CTAG	2 cut(s)	149, 306
GlaI	GCGC	5 cut(s)	205, 207, 256, 258, 289
GluI	GCNGC	3 cut(s)	181, 235, 286
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	146
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	5 cut(s)	206, 208, 257, 259, 290
Hin1II	CATG	2 cut(s)	50, 367
Hin6I	GCGC	5 cut(s)	204, 206, 255, 257, 288
HinP1I	GCGC	5 cut(s)	204, 206, 255, 257, 288
HinfI	GANTC	2 cut(s)	26, 92
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	14, 124
Hpy188III	TCNNGA	4 cut(s)	47, 82, 339, 353
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	3 cut(s)	65, 104, 173
HpyCH4III	ACNGT	2 cut(s)	198, 251
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	108, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	50, 367
HspAI	GCGC	5 cut(s)	204, 206, 255, 257, 288
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	5 cut(s)	124, 158, 180, 188, 274
LpnPI	CCDG	1 cut(s)	324
Lsp1109I	GCAGC	3 cut(s)	192, 246, 297
MaeI	CTAG	2 cut(s)	149, 306
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	133, 381
MlyI	GAGTC	2 cut(s)	20, 86
MmeI	TCCRAC	2 cut(s)	120, 180
MnlI	CCTC	2 cut(s)	58, 130
MseI	TTAA	2 cut(s)	141, 369
MslI	CAYNNNNRTG	1 cut(s)	196
MspCI	CTTAAG	1 cut(s)	140
MvnI	CGCG	2 cut(s)	206, 257
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	50, 367
NlaIV	GGNNCC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	367
OliI	CACNNNNGTG	1 cut(s)	196
PagI	TCATGA	1 cut(s)	46
PauI	GCGCGC	2 cut(s)	204, 255
PciI	ACATGT	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 165
PflFI	GACNNNGTC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	182, 236, 287
PleI	GAGTC	2 cut(s)	20, 86
PpsI	GAGTC	2 cut(s)	20, 86
PscI	ACATGT	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	67, 145
PsuI	RGATCY	1 cut(s)	111
PsyI	GACNNNGTC	1 cut(s)	65
PteI	GCGCGC	2 cut(s)	204, 255
RseI	CAYNNNNRTG	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	141, 369
SatI	GCNGC	3 cut(s)	181, 235, 286
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	2 cut(s)	67, 145
SchI	GAGTC	2 cut(s)	20, 86
SduI	GDGCHC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	133, 381
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	2 cut(s)	149, 306
SstI	GAGCTC	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	198, 251
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	60, 90, 378
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	133, 381
Tru1I	TTAA	2 cut(s)	141, 369
Tru9I	TTAA	2 cut(s)	141, 369
TscAI	CASTG	3 cut(s)	77, 203, 254
TseI	GCWGC	3 cut(s)	180, 234, 285
TspRI	CASTG	3 cut(s)	77, 203, 254
Tth111I	GACNNNGTC	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	200
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	367
XmaJI	CCTAGG	1 cut(s)	148
XspI	CTAG	2 cut(s)	149, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.